sp|Q56XX3|Y2215_ARATH ----> Uncharacterized protein At2g02148

Intron 1 GTTTGATATT ... GTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.08	120	15	31
A2	15.84	85	7	25
A3	10.68	138	19	14
A4	20.65	123	27	37
A5	11.56	65	6	11
A6	9.33	68	2	12
A7	8.98	228	19	26
A8	12.9	81	13	11
A9	10	180	10	30
A10	12.2	252	23	47

>TRINITY_DN112799_c0_g1_i2 from sample A1 / Example spliced isoform

GCCACGAGCAAAGGCTTTGACTATACATGTAAAGTGTCCTACAATAACAATTTTTTATTTTCCAATGTTCCTGTAGCGTTGACCCCTACTACTTACCGAGCTAGGGTAAAGTGACCTGACCGCTAACATTTTGACAGTCGAGACTTAAGTCGGAGTAGGAGGTTCGAGGTTTGGAGGTCTGGTGTGGAATCAGGTATGAA
ACGAGGCACGGTGGGAGGTTGGGAATTCTTCAAACAAGATCTCTTCCTCCACGCTCGAAATAACCTGAATCAGGAGGAGGAAACCGTCTAAGCAGCAACAGCCTTTGGGCGAGTATACTGGAAGATCATCACAGTGGCGTCAAATGCGAACATTTCTTTCCCCTCCTCGTTCACATCTCTTCTCTGTCCGAGGAGAATAG
TGGATATGGGAACCCGCTTGGGTTCCGTGCCGCATTACAATCTCAATTCTGCCAATTCTTTCATTGGCAACTCTATGCACGACCTTAACACTGTCGACGGCACCTCCACTCCTCAAATTGACGGTATCAGCGACGTCGACAGGGATGCTGTTACTGGCGACAGCTTAGACAACGACGATGATTCCAGTTCTGCTGGTTGT
GTGCACCAGTCCTATGGAAATTCTTTGCAGCTACAGGCCATGGGTGGTGTAGAACCAGAGCATTCTTTACAGCTTGAAAACAATGAACCTCCAAGGTCTCCCTATGGTGTACTGACAATTAATGGTAAGTGTTATTTTGTTTAATTTCTATGTTGAAGTTGTTGGAAAGGTATGCCAGTAATTGGGACTTGAAGAATGCA
GGATTTTCAGATTGCTTGTGAGCATGTGGTCC

>TRINITY_DN112799_c0_g1_i5 from sample A1 / Example unspliced isoform:

GCCACGAGCAAAGGCTTTGACTATACATGTAAAGTGTCCTACAATAACAATTTTTTATTTTCCAATGTTCCTGTAGCGTTGACCCCTACTACTTACCGAGCTAGGGTAAAGTGACCTGACCGCTAACATTTTGACAGTCGAGACTTAAGTCGGAGTAGGAGGTTCGAGGTTTGGAGGTCTGGTGTGGAATCAGGTATGAA
ACGAGGCACGGTGGGAGGTTGGGAATTCTTCAAACAAGATCTCTTCCTCCACGCTCGAAATAACCTGgtttgatattctcattcccttagcttgttttttccattctgactggacctgctagagtgtttttgtttctgtttctgttttgataaaatttgcttgcaatggccgtagggttttcattccccgcttcgtcgtc
gccttcttcctgtttttgcagAATCAGGAGGAGGAAACCGTCTAAGCAGCAACAGCCTTTGGGCGAGTATACTGGAAGATCATCACAGTGGCGTCAAATGCGAACATTTCTTTCCCCTCCTCGTTCACATCTCTTCTCTGTCCGAGGAGAATAGTGGATATGGGAACCCGCTTGGGTTCCGTGCCGCATTACAATCTCAA
TTCTGCCAATTCTTTCATTGGCAACTCTATGCACGACCTTAACACTGTCGACGGCACCTCCACTCCTCAAATTGACGGTATCAGCGACGTCGACAGGGATGCTGTTACTGGCGACAGCTTAGACAACGACGATGATTCCAGTTCTGCTGGTTGTGTGCACCAGTCCTATGGAAATTCTTTGCAGCTACAGGCCATGGGTG
GTGTAGAACCAGAGCATTCTTTACAGCTTGAAAACAATGAACCTCCAAGGTCTCCCTATGGTGTACTGACAATTAATGATGTTATACCAATTGAATCTGCAAGGGCACGATTTTTGCAACTTGTTCTTGATTGTTTTCTTCAACCTCGTGTAATTGAAGTTCCTGATTCACCAGAATCTTCCTATAACAGTCCCAATGGA
AAGGATAAGCAAAAAAAGAGAAAGTCAAGAGAGTCACAATATGAAGGTGATGCAAGATTTGTCTTGCCACTTGCTTATGTGGCAAACTTATATGAAACTCTTGTTAATGAGGTGAACATACGGCTTGCCACTCTAGATGGAATCCGGGAAAAGACGATGGGTGTGGCACTTGAAGCAGCTGGTGGCTTGTATAGAAGGCT
TGTAAAGAAGTTCCCTAGGAAAGGCCCATATACATTCAGAAGGAGAGAGATGGCATCTGCCCTAGAAGCAAGGACAAAGTTCCCAGAGCTGGTTACGAGAGAAGAAAAACGTGTACGTTTTGTAGTGGTTCATGGGTTGGAGATTGTGGAGCAGCCGCATATGTCTATTGAAGATGCTGAATGGTTCAGACGCTTGACAG
GAAGGCATGAAGCAGTGATTTCTGAAAGAGATTACAAGTATTATTCAGCGAGACACAAATATAGACGTACTCCTCAGAATTCCCTTTCCTCTGTAACTGGAATGCCTGCATACCCTAATGCAGAAAATTCAACACTAGGTGCTCCTCCTGGTCTTCGTTCACCTTACACGAATGATATCCTGAATCTTACATCTCGATCA
CCTCCTCAACATCAAATACAGCACCAGCCACAGCATCAGCTGCATTGTCTACCACATCAAGCTCAACACCAGCAACTGCATCAATCCCAACATCAATCCCTTCATCAGTCTCAGCAGACAACACACTTATCTCATCCATCTCATGGACAACATTGCACCCACACTTCACATTTGGATGATATGCCCCATGCACAGCATAC
CTCACCAGTACCTCAGCATATGCCTCGCAATCTGCCGCCACCACCTGGTTTAAATGTTGGAGGCCGAATGCTTATGTTGCCAACGAGCCCTCCAAAATATTGTGATCAATGTGGTTCACCATATTTAAGAGAGACCTCCAAGTTCTGTTCAGAATGTGGAGCCAAGAGGATAGGCACATGAAAAGCAGGGCCAAATGAGT
TTCACTTCTGTAATTATATATTGTATTGCTGATACTTTGGCTACAGTGAAGTAAAATTCAAGGGATAGACACATCTGAAGAGTAGAAAGAGTTCAAATGTGTGTGCGCCTTTTCCCTACTATTTGATGTGTACATTTATTGCTTACAAGTTACATTTTAGTTATTTGCAAGTAGCCTAGTGTCATCTGGTCTCAGTGGTG
ATAAATGCAAAAAAAATGAAATAACAAGGGATTGTTAAGTGGTTGCAAGTACTAAATTCACAAGTAGTTAGGAAGTTGTATAGTTGTAGGGTTGGGTAGTGACACCATTTTATAATTCTGTACATTTGATGCACCAGACAGTGAGGTCTTGAGAGCACATTTTTG

Intron 2 GTTTGATATT ... ATGGCCGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.33	22	15	16
A2	51.02	12	7	18
A3	31.51	25	19	4
A4	37.23	43	27	24
A5	36.59	13	6	9
A6	41.18	5	2	5
A7	34.07	30	19	12
A8	33.33	17	13	4
A9	31.71	28	10	16
A10	35.09	37	23	17

>TRINITY_DN112799_c0_g1_i6 from sample A1 / Example spliced isoform

GCCACGAGCAAAGGCTTTGACTATACATGTAAAGTGTCCTACAATAACAATTTTTTATTTTCCAATGTTCCTGTAGCGTTGACCCCTACTACTTACCGAGCTAGGGTAAAGTGACCTGACCGCTAACATTTTGACAGTCGAGACTTAAGTCGGAGTAGGAGGTTCGAGGTTTGGAGGTCTGGTGTGGAATCAGGTATGAA
ACGAGGCACGGTGGGAGGTTGGGAATTCTTCAAACAAGATCTCTTCCTCCACGCTCGAAATAACCTGGGTTTTCATTCCCCGCTTCGTCGTCGCCTTCTTCCTGTTTTTGCAGAATCAGGAGGAGGAAACCGTCTAAGCAGCAACAGCCTTTGGGCGAGTATACTGGAAGATCATCACAGTGGCGTCAAATGCGAACATT
TCTTTCCCCTCCTCGTTCACATCTCTTCTCTGTCCGAGGAGAATAGTGGATATGGGAACCCGCTTGGGTTCCGTGCCGCATTACAATCTCAATTCTGCCAATTCTTTCATTGGCAACTCTATGCACGACCTTAACACTGTCGACGGCACCTCCACTCCTCAAATTGACGGTATCAGCGACGTCGACAGGGATGCTGTTAC
TGGCGACAGCTTAGACAACGACGATGATTCCAGTTCTGCTGGTTGTGTGCACCAGTCCTATGGAAATTCTTTGCAGCTACAGGCCATGGGTGGTGTAGAACCAGAGCATTCTTTACAGCTTGAAAACAATGAACCTCCAAGGTCTCCCTATGGTGTACTGACAATTAATGATGTTATACCAATTGAATCTGCAAGGGCAC
GATTTTTGCAACTTGTTCTTGATTGTTTTCTTCAACCTCGTGTAATTGAAGTTCCTGATTCACCAGAATCTTCCTATAACAGTCCCAATGGAAAGGATAAGCAAAAAAAGAGAAAGTCAAGAGAGTCACAATATGAAGGTGATGCAAGATTTGTCTTGCCACTTGCTTATGTGGCAAACTTATATGAAACTCTTGTTAAT
GAGGTGAACATACGGCTTGCCACTCTAGATGGAATCCGGGAAAAGACGATGGGTGTGGCACTTGAAGCAGCTGGTGGCTTGTATAGAAGGCTTGTAAAGAAGTTCCCTAGGAAAGGCCCATATACATTCAGAAGGAGAGAGATGGCATCTGCCCTAGAAGCAAGGACAAAGTTCCCAGAGCTGGTTACGAGAGAAGAAAA
ACGTGTACGTTTTGTAGTGGTTCATGGGTTGGAGATTGTGGAGCAGCCGCATATGTCTATTGAAGATGCTGAATGGTTCAGACGCTTGACAGGAAGGCATGAAGCAGTGATTTCTGAAAGAGATTACAAGTATTATTCAGCGAGACACAAATATAGACGTACTCCTCAGAATTCCCTTTCCTCTGTAACTGGAATGCCTG
TAAGTGTATTCTTGATGATTCCGTTATAACAATTTGGTTGCAAATATTTCAGTTGCTGTGTGCTTTTAATTTCCAATAGGGGTAATGCCAGGTTTACTCTGG

>TRINITY_DN112799_c0_g1_i5 from sample A1 / Example unspliced isoform:

GCCACGAGCAAAGGCTTTGACTATACATGTAAAGTGTCCTACAATAACAATTTTTTATTTTCCAATGTTCCTGTAGCGTTGACCCCTACTACTTACCGAGCTAGGGTAAAGTGACCTGACCGCTAACATTTTGACAGTCGAGACTTAAGTCGGAGTAGGAGGTTCGAGGTTTGGAGGTCTGGTGTGGAATCAGGTATGAA
ACGAGGCACGGTGGGAGGTTGGGAATTCTTCAAACAAGATCTCTTCCTCCACGCTCGAAATAACCTGgtttgatattctcattcccttagcttgttttttccattctgactggacctgctagagtgtttttgtttctgtttctgttttgataaaatttgcttgcaatggccgtagGGTTTTCATTCCCCGCTTCGTCGTC
GCCTTCTTCCTGTTTTTGCAGAATCAGGAGGAGGAAACCGTCTAAGCAGCAACAGCCTTTGGGCGAGTATACTGGAAGATCATCACAGTGGCGTCAAATGCGAACATTTCTTTCCCCTCCTCGTTCACATCTCTTCTCTGTCCGAGGAGAATAGTGGATATGGGAACCCGCTTGGGTTCCGTGCCGCATTACAATCTCAA
TTCTGCCAATTCTTTCATTGGCAACTCTATGCACGACCTTAACACTGTCGACGGCACCTCCACTCCTCAAATTGACGGTATCAGCGACGTCGACAGGGATGCTGTTACTGGCGACAGCTTAGACAACGACGATGATTCCAGTTCTGCTGGTTGTGTGCACCAGTCCTATGGAAATTCTTTGCAGCTACAGGCCATGGGTG
GTGTAGAACCAGAGCATTCTTTACAGCTTGAAAACAATGAACCTCCAAGGTCTCCCTATGGTGTACTGACAATTAATGATGTTATACCAATTGAATCTGCAAGGGCACGATTTTTGCAACTTGTTCTTGATTGTTTTCTTCAACCTCGTGTAATTGAAGTTCCTGATTCACCAGAATCTTCCTATAACAGTCCCAATGGA
AAGGATAAGCAAAAAAAGAGAAAGTCAAGAGAGTCACAATATGAAGGTGATGCAAGATTTGTCTTGCCACTTGCTTATGTGGCAAACTTATATGAAACTCTTGTTAATGAGGTGAACATACGGCTTGCCACTCTAGATGGAATCCGGGAAAAGACGATGGGTGTGGCACTTGAAGCAGCTGGTGGCTTGTATAGAAGGCT
TGTAAAGAAGTTCCCTAGGAAAGGCCCATATACATTCAGAAGGAGAGAGATGGCATCTGCCCTAGAAGCAAGGACAAAGTTCCCAGAGCTGGTTACGAGAGAAGAAAAACGTGTACGTTTTGTAGTGGTTCATGGGTTGGAGATTGTGGAGCAGCCGCATATGTCTATTGAAGATGCTGAATGGTTCAGACGCTTGACAG
GAAGGCATGAAGCAGTGATTTCTGAAAGAGATTACAAGTATTATTCAGCGAGACACAAATATAGACGTACTCCTCAGAATTCCCTTTCCTCTGTAACTGGAATGCCTGCATACCCTAATGCAGAAAATTCAACACTAGGTGCTCCTCCTGGTCTTCGTTCACCTTACACGAATGATATCCTGAATCTTACATCTCGATCA
CCTCCTCAACATCAAATACAGCACCAGCCACAGCATCAGCTGCATTGTCTACCACATCAAGCTCAACACCAGCAACTGCATCAATCCCAACATCAATCCCTTCATCAGTCTCAGCAGACAACACACTTATCTCATCCATCTCATGGACAACATTGCACCCACACTTCACATTTGGATGATATGCCCCATGCACAGCATAC
CTCACCAGTACCTCAGCATATGCCTCGCAATCTGCCGCCACCACCTGGTTTAAATGTTGGAGGCCGAATGCTTATGTTGCCAACGAGCCCTCCAAAATATTGTGATCAATGTGGTTCACCATATTTAAGAGAGACCTCCAAGTTCTGTTCAGAATGTGGAGCCAAGAGGATAGGCACATGAAAAGCAGGGCCAAATGAGT
TTCACTTCTGTAATTATATATTGTATTGCTGATACTTTGGCTACAGTGAAGTAAAATTCAAGGGATAGACACATCTGAAGAGTAGAAAGAGTTCAAATGTGTGTGCGCCTTTTCCCTACTATTTGATGTGTACATTTATTGCTTACAAGTTACATTTTAGTTATTTGCAAGTAGCCTAGTGTCATCTGGTCTCAGTGGTG
ATAAATGCAAAAAAAATGAAATAACAAGGGATTGTTAAGTGGTTGCAAGTACTAAATTCACAAGTAGTTAGGAAGTTGTATAGTTGTAGGGTTGGGTAGTGACACCATTTTATAATTCTGTACATTTGATGCACCAGACAGTGAGGTCTTGAGAGCACATTTTTG