NA ----> NA
Intron 1 GTAAAAGCTG ... CATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 6 | 6 | 3 |
| A2 | 44 | 7 | 8 | 3 |
| A3 | 37.04 | 17 | 10 | 10 |
| A4 | 32.9 | 25.5 | 14 | 11 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 46.39 | 18.5 | 24 | 8 |
| A7 | 54.33 | 29 | 48 | 21 |
| A8 | 47.26 | 53 | 71 | 24 |
| A9 | 47.97 | 32 | 45 | 14 |
| A10 | 42.02 | 34.5 | 36 | 14 |
>TRINITY_DN44327_c0_g1_i1 from sample A9 / Example spliced isoformGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCC
AAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGAT
ATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCAC
TAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATG
CTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCA
AATTAAAAAAATTGCAATTTCCTTAAAT
>TRINITY_DN44327_c0_g1_i6 from sample A9 / Example unspliced isoform:AAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGC
AGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGC
TATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGA
TATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCT
TTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAA
GTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAA
ATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCAT
CTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATGTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACT
TCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAAT
TCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGg
taaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatccttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttca
tacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaat
caataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtc
atgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactaccta
tacaagagaaactggggttagtttccatttgggtaaaagtgcattgcaggctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaa
ttgtatgtatgtgcgtagtctccgaggagacattgctgtgatgttcttaccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatatccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatggactatcattgattatc
tagacatggcttcctctagggaaggaggggaggaagaaagttgggcaacatgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaattgttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacacacgaatcagaattaaa
aaatactctggtattgatctaaagcattactctctgtatagcgttctttattgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaatatctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagcttgtcagtattttgtca
gagagttatcaggactatgttattcttgcttgtcatgtagagatggtcagtttgtttaagatggatgaatgcaacatttttcagCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGA
TCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAA
TCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAA
CTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCT
TGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCCTTAAAT
Intron 2 GTAAAAGCTG ... ATGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 10 | 6 | 9 |
| A2 | 69.23 | 4 | 8 | 10 |
| A3 | 63.64 | 4 | 10 | 4 |
| A4 | 40 | 15 | 14 | 6 |
| A5 | 100 | 0 | 2 | 5 |
| A6 | 76.19 | 5 | 24 | 8 |
| A7 | 64.29 | 20 | 48 | 24 |
| A8 | 53.85 | 42 | 71 | 27 |
| A9 | 65.77 | 19 | 45 | 28 |
| A10 | 50.54 | 23 | 36 | 11 |
>TRINITY_DN47040_c0_g1_i1 from sample A10 / Example spliced isoformATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGATCTAAGGGAATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAGGCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAATCTTCGAGGAGACATT
GCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGTAATATTTTTGGGCGAATCAAACCCTACTTTGTTGATGTAAATATATATTAACTAGACATGGCTTCCTCTAGGGAAGGAGGGGAGGAAGAAAGTTGGG
CAACATGCATCTCTTGGGTGATCAAAAGCCTAAATGTTTGTGAATGATATTCATTTCATCAGAGAATTTGTTTTGGC
>TRINITY_DN47040_c0_g1_i10 from sample A10 / Example unspliced isoform:ATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatccttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagt
ggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacata
tatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatc
tgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccagGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGATCTAAGGGA
ATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAGGCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAAGTATGTGAACTTTTACAGCCTAGTATTTATTTTAACTTCTGACTCGAGTGAGTAAAATTAGGAATTATCTACCTCTTGCTATA
CTAATTAAGAAAAATTGTATGTATGTGCGTAGTCTTCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGTAATATTTTTGGGCGAATCAAACCCTACTTTGTTGATGTAAATATATATT
AACTAGACATGGCTTCCTCTAGGGAAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGGGTGATCAAAAGCCTAAATGTTTGTGAATGATATTCATTTCATCAGAGAATTTGTTTTGGC
Intron 3 GTAAAAGCTG ... CCATCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.74 | 8 | 6 | 5 |
| A2 | 60 | 9 | 8 | 19 |
| A3 | 56.52 | 10 | 10 | 16 |
| A4 | 51.61 | 15 | 14 | 18 |
| A5 | 25 | 3 | 2 | 0 |
| A6 | 63.08 | 12 | 24 | 17 |
| A7 | 64.78 | 28 | 48 | 55 |
| A8 | 56.22 | 51 | 71 | 60 |
| A9 | 58.89 | 37 | 45 | 61 |
| A10 | 51.41 | 43 | 36 | 55 |
>TRINITY_DN47040_c0_g1_i13 from sample A10 / Example spliced isoformATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGA
AGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTC
ACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCA
ACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTT
>TRINITY_DN47040_c0_g1_i3 from sample A10 / Example unspliced isoform:ATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatcctttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaag
tggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacat
atatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactat
ctgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaaggg
aatcaccactacctatacaagagaaactggggttagtttccatttgggtaaaagtgcattgcaggctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctat
actaattaagaaaaattgtatgtatgtgcgtagtcttcgaggagacattgctgtgatgttcttaccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatatccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatgga
ctatcattgattatctagacatggcttcctctaggggaggaggggaggaagaaagttgggcaacatgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaattgttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacaca
cgaatcagaattaaaaaatactctggtattgatctaaagcattactctctgtatagcgttctttattgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaatatctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagctt
gtcagtattttgtcagagagttatcaggactatgttattcttgcttgtcatgtagagatggtcagtttgtttaagatggatgaatgcaacatttttcagcttttgcttttgctttttggaggaagtatgttttctggacagtggacgctatttgatccaagtgacatggtctgcttgaaatcttcaatgccatcttcagA
GGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGC
CTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGAT
CTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGA
CCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTT
Intron 4 GTAAAAGCTG ... TTGGAGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 5 | 6 | 3 |
| A2 | 39.13 | 14 | 8 | 10 |
| A3 | 37.5 | 20 | 10 | 14 |
| A4 | 34.94 | 27 | 14 | 15 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 59.26 | 11 | 24 | 8 |
| A7 | 57.45 | 30 | 48 | 33 |
| A8 | 47.37 | 60 | 71 | 37 |
| A9 | 52.31 | 31 | 45 | 23 |
| A10 | 45.21 | 40 | 36 | 30 |
>TRINITY_DN43784_c0_g1_i5 from sample A8 / Example spliced isoformGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTT
GAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCT
TGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACC
CATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATA
GGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAAT
TTCC
>TRINITY_DN43784_c0_g1_i7 from sample A8 / Example unspliced isoform:GCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacc
caccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatcctttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatac
ctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacc
cactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaa
cttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactacctatacaagagaaactggggttagtttccatttgggtaaaagtgcattgcag
gctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaattgtatgtatgtgcgtagtcttcgaggagacattgctgtgatgttctta
ccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatatccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatggactatcattgattatctagacatggcttcctctaggggaggaggggaggaagaaagttgggcaac
atgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaattgttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacacacgaatcagaattaaaaaatactctggtattgatctaaagcattactctctgtatagcgttcttt
attgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaatatctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagcttgtcagtattttgtcagagagttatcaggactatgttattcttgcttgtcatgtagagatggtca
gtttgtttaagatggatgaatgcaacatttttcagcttttgcttttgctttttggaggaagTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAG
GATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATA
CTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAAC
CTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCAC
TATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCC
Intron 5 GTAAAAGCTG ... CATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 6 | 6 | 3 |
| A2 | 44 | 7 | 8 | 3 |
| A3 | 37.04 | 17 | 10 | 10 |
| A4 | 33.33 | 25 | 14 | 11 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 47.06 | 18 | 24 | 8 |
| A7 | 54.33 | 29 | 48 | 21 |
| A8 | 47.26 | 53 | 71 | 24 |
| A9 | 47.97 | 32 | 45 | 14 |
| A10 | 42.37 | 34 | 36 | 14 |
>TRINITY_DN43784_c0_g1_i9 from sample A8 / Example spliced isoformGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTA
TTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGAC
CTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTT
GTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGG
AGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGT
TATACTCAAATTAAAAAAATTGCAATTTCC
>TRINITY_DN43784_c0_g1_i7 from sample A8 / Example unspliced isoform:GCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacc
caccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatcctttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatac
ctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacc
cactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaa
cttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactacctatacaagagaaactggggttagtttccatttgggtaaaagtgcattgcag
gctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaattgtatgtatgtgcgtagtcttcgaggagacattgctgtgatgttctta
ccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatatccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatggactatcattgattatctagacatggcttcctctaggggaggaggggaggaagaaagttgggcaac
atgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaattgttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacacacgaatcagaattaaaaaatactctggtattgatctaaagcattactctctgtatagcgttcttt
attgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaatatctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagcttgtcagtattttgtcagagagttatcaggactatgttattcttgcttgtcatgtagagatggtca
gtttgtttaagatggatgaatgcaacatttttcagCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAG
GATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATA
CTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAAC
CTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCAC
TATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCC
Intron 6 GTAAAAGCTG ... CCATCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.74 | 8 | 6 | 5 |
| A2 | 60 | 9 | 8 | 19 |
| A3 | 56.52 | 10 | 10 | 16 |
| A4 | 51.61 | 15 | 14 | 18 |
| A5 | 25 | 3 | 2 | 0 |
| A6 | 63.08 | 12 | 24 | 17 |
| A7 | 64.78 | 28 | 48 | 55 |
| A8 | 56.22 | 51 | 71 | 60 |
| A9 | 58.89 | 37 | 45 | 61 |
| A10 | 51.41 | 43 | 36 | 55 |
>TRINITY_DN47040_c0_g1_i13 from sample A10 / Example spliced isoformATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGA
AGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTC
ACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCA
ACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTT
>TRINITY_DN47040_c0_g1_i8 from sample A10 / Example unspliced isoform:ATGCTCTTCTATGAAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTC
TTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGG
CTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGC
GGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAA
AAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATTGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAA
AGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAG
GTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAG
AGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGG
TCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACT
ACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACC
AGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatccttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagt
ggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacata
tatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatc
tgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaaggga
atcaccactacctatacaagagaaactggggttagtttccatttgggtaaaagtgcattgcaggctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctata
ctaattaagaaaaattgtatgtatgtgcgtagtcttcgaggagacattgctgtgatgttcttaccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatatccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatggac
tatcattgattatctagacatggcttcctctaggggaggaggggaggaagaaagttgggcaacatgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaattgttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacacac
gaatcagaattaaaaaatactctggtattgatctaaagcattactctctgtatagcgttctttattgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaatatctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagcttg
tcagtattttgtcagagagttatcaggactatgttattcttgcttgtcatgtagagatggtcagtttgtttaagatggatgaatgcaacatttttcagcttttgcttttgctttttggaggaagtatgttttctggacagtggacgctatttgatccaagtgacatggtctgcttgaaatcttcaatgccatcttcagAG
GATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCC
TTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATC
TGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGAC
CTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTT
Intron 7 GTAAAAGCTG ... CATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 6 | 6 | 3 |
| A2 | 44 | 7 | 8 | 3 |
| A3 | 37.04 | 17 | 10 | 10 |
| A4 | 32.47 | 26 | 14 | 11 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 45.71 | 19 | 24 | 8 |
| A7 | 54.33 | 29 | 48 | 21 |
| A8 | 47.26 | 53 | 71 | 24 |
| A9 | 47.97 | 32 | 45 | 14 |
| A10 | 41.67 | 35 | 36 | 14 |
>TRINITY_DN44327_c0_g1_i1 from sample A9 / Example spliced isoformGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCC
AAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGAT
ATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCAC
TAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATG
CTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCA
AATTAAAAAAATTGCAATTTCCTTAAAT
>TRINITY_DN44327_c0_g1_i3 from sample A9 / Example unspliced isoform:AAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGC
AGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGC
TATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGA
TATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCT
TTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAA
GTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAA
ATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCAT
CTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATGTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACT
TCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAAT
TCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGg
taaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatccttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttca
tacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaat
caataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtc
atgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactaccta
tacaagagaaactggggttagtttccatttgggtaaaagtgcattgcaggctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaatctccgaggagacattgctgtgatgttcttaccatcttccttgaataacagcctggagaattagatgagaagctgtttggatggggaggtcatatat
ccacagtgaaaatgaacattgaaatatttttgggtcaatcaaaccctatatgttgatgtaaatatatggactatcattgattatctagacatggcttcctctagggaaggaggggaggaagaaagttgggcaacatgcatctcttgattgatcaaaagcctaaatgaatgtgaaatgatgttcatttcatccaaagaatt
gttttgggtcctatcaagtttcaaggcatgaaattcagaaaatattctttagtgttagaaagtacacacacgaatcagaattaaaaaatactctggtattgatctaaagcattactctctgtatagcgttctttattgcatggcatgttttatcaaacaaaatagctatgagctaaataagatatatgttatttttaata
tctgtgtttcttgccattgcaattaccttgagatgtcatttgctagttatcttagttgtggaaacagcttgtcagtattttgtcagagagttatcaggactatgttattcttgcttgtcatgtagagatggtcagtttgtttaagatggatgaatgcaacatttttcagCTTTTGCTTTTGCTTTTTGGAGGAAGTATGT
TTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATG
GGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTT
GCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAG
CTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGAT
ACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCCTTAAAT
Intron 8 GTAAAAGCTG ... ATGTGCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44 | 7 | 6 | 5 |
| A2 | 46.15 | 7 | 8 | 4 |
| A3 | 50 | 6 | 10 | 2 |
| A4 | 34.69 | 16 | 14 | 3 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 58.51 | 13 | 24 | 12.7 |
| A7 | 57.14 | 28 | 48 | 26.7 |
| A8 | 52.42 | 42.7 | 71 | 23 |
| A9 | 39.48 | 50.3 | 45 | 20.7 |
| A10 | 44.44 | 30 | 36 | 12 |
>TRINITY_DN44327_c0_g1_i7 from sample A9 / Example spliced isoformAAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGC
AGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGC
TATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGA
TATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCT
TTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAA
GTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAA
ATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCAT
CTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATGTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACT
TCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAAT
TCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGT
CTCCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAG
GGAAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATC
TAAAGCATTACTCTCTGTATAGCGTTCTTTATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAATAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATG
TTATTCTTGCTTGTCATGTAGAGATGGTCAGTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCA
AATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGAT
GATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCC
AAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAA
CAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCCTTAAAT
>TRINITY_DN44327_c0_g1_i6 from sample A9 / Example unspliced isoform:AAGGACTATCATTTAACGCTATTTGTCTAAATACTAACATCAACCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGC
AGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGC
TATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGA
TATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCT
TTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAA
GTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAA
ATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCAT
CTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATGTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACT
TCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAAT
TCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGg
taaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacccaccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatccttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttca
tacgacatactgttaaagttttgttaatttgtactctttcttggaatacctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaat
caataggttgattttcgtggaaactttttaggatggttgtctgctcacccactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtc
atgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaacttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactaccta
tacaagagaaactggggttagtttccatttgggtaaaagtgcattgcaggctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaa
ttgtatgtatgtgcgtagTCTCCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATC
TAGACATGGCTTCCTCTAGGGAAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAA
AAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTTATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAATAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCA
GAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCAGTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGA
TCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAA
TCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAA
CTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTTTGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCT
TGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCCTTAAAT
Intron 9 GTAAAAGCTG ... ATGTGCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44 | 7 | 6 | 5 |
| A2 | 46.15 | 7 | 8 | 4 |
| A3 | 50 | 6 | 10 | 2 |
| A4 | 34.69 | 16 | 14 | 3 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 58.06 | 13 | 24 | 12 |
| A7 | 57.25 | 28 | 48 | 27 |
| A8 | 52.22 | 43 | 71 | 23 |
| A9 | 39.39 | 50 | 45 | 20 |
| A10 | 44.44 | 30 | 36 | 12 |
>TRINITY_DN43784_c0_g1_i3 from sample A8 / Example spliced isoformGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGTCTTCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAG
CCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAGGGGAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGATTGATCA
AAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTTATTGCATGGCATGTTTTATC
AAACAAAATAGCTATGAGCTAAATAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCAGTTTGTTTAAGATGGATGAA
TGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGC
TTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATACTCATCCAGCTACTTGTAGG
GAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAACCTGTGCAGTTGATAAAGCAA
CACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCACTATGCCTCTATGCCTCCTTG
CTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCC
>TRINITY_DN43784_c0_g1_i7 from sample A8 / Example unspliced isoform:GCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacc
caccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatcctttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatac
ctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacc
cactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaa
cttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccaggaatccttgccttaggcctgctgtcttatttttggaaagtgtggatctaagggaatcaccactacctatacaagagaaactggggttagtttccatttgggtaaaagtgcattgcag
gctctgcaacagatcagagtcctatcaccaaagtcacaactgaactggaagcaagtatgtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaattgtatgtatgtgcgtagTCTTCGAGGAGACATTGCTGTGATGTTCTTA
CCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAGGGGAGGAGGGGAGGAAGAAAGTTGGGCAAC
ATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTT
ATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAATAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCA
GTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAG
GATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATA
CTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAAC
CTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCAC
TATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCC
Intron 10 GTAAAAGCTG ... ATGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 10 | 6 | 9 |
| A2 | 69.23 | 4 | 8 | 10 |
| A3 | 63.64 | 4 | 10 | 4 |
| A4 | 40 | 15 | 14 | 6 |
| A5 | 100 | 0 | 2 | 5 |
| A6 | 76.19 | 5 | 24 | 8 |
| A7 | 64.29 | 20 | 48 | 24 |
| A8 | 53.85 | 42 | 71 | 27 |
| A9 | 65.77 | 19 | 45 | 28 |
| A10 | 50.54 | 23 | 36 | 11 |
>TRINITY_DN43784_c0_g1_i4 from sample A8 / Example spliced isoformGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGATCTAAG
GGAATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAGGCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAATCTTCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGA
>TRINITY_DN43784_c0_g1_i7 from sample A8 / Example unspliced isoform:GCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTGGTCTGT
GGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTTCTCTTT
CGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGACGGGGCC
TCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTGGTCGAA
TCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTGTGTGGT
GTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATCTTTTGCACCTGTTGGATTTTTCACATTC
TGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTTGGAATA
GCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAATTACGAT
TTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGCTTTTGG
AGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGgtaaaagctgtacttttttaagtttacctataaaaatcagatttgtgaacc
caccaaataatttactatgcatagaaacctataattctttatggtaacacattttattgaagatcctttttgtggcctagtttatctggtttaaggccatattcctggggcagattgtttaagatgatgtttgaagtggcttcaaagttcatacgacatactgttaaagttttgttaatttgtactctttcttggaatac
ctattcagctatttgggaaagtaacaattctcatctaatctacagatcagtatgttagaaccaagaagtgaaaaaaaatcaaacatgtgacagtttatggagttagaaactaatatgtggtcaaatttttcgacatatatgtttctgtaatcaataggttgattttcgtggaaactttttaggatggttgtctgctcacc
cactggcacccttgatatcatttcatcatttagatgcaatggcaaccatattcccgaaaatgaatcaaacacaggccttcagacatctctttgaggtagtaaatacagattctagtaggattcttcaacagactatctgttattctgtgtcatgaggatacaacgtacatgtttttgatagcatccaattcccacgtgaa
cttgaatctcctcagcagactttcatgcattggaggaaaactatgatagatcaatttatgttcaacactcgtaatgtttccagGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGATCTAAGGGAATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAG
GCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAAGTATGTGAACTTTTACAGCCTAGTATTTATTTTAACTTCTGACTCGAGTGAGTAAAATTAGGAATTATCTACCTCTTGCTATACTAATTAAGAAAAATTGTATGTATGTGCGTAGTCTTCGAGGAGACATTGCTGTGATGTTCTTA
CCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAGGGGAGGAGGGGAGGAAGAAAGTTGGGCAAC
ATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTT
ATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAATAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCA
GTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAG
GATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGCCGAAAAATCTATGGGCTTTGGGGGATGATAAGGTCTCCTGATTTTTTAAAGCCATA
CTCATCCAGCTACTTGTAGGGAGAAGAAATGTTCCATTGTATTTTAACACACTCAAATTGGCACTTGCAAGTGTTTGCTCAGACTTGTAAGCACTAGGGAAATTTACTGACCCATACATTTCACTGGGGGCTAGATCTGAGATACACAAAACTGCCTTGTTCCTATTTCCAAGGTAAAGACATTATTCTAAGTTTCTAAC
CTGTGCAGTTGATAAAGCAACACTCGTGACTCTGAGATCACCTCTTGTGCACTTTATGGAAGTTAGCTTATTTAATCCGCCAAAGGAGACTATGCTCTCACACTTGTATATAGGGGATGCCAACAATGCAGGGAGACCTTGCTCTCACCCTTGTATGTAGGGGATGCAAACAATGCTCTTGTATAGGAAGGCAAGGTCAC
TATGCCTCTATGCCTCCTTGCTTGCAATTCAGCAATAATCAGTTTGAGTTTGTTTCCACGAATGATACATACATGGAAGAACTGGTTATACTCAAATTAAAAAAATTGCAATTTCC
Intron 11 GTATGTGAAC ... ATGTGCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.49 | 4.7 | 10 | 5 |
| A2 | 32.14 | 4.9 | 0 | 4 |
| A3 | 37.34 | 7.9 | 7 | 2 |
| A4 | 50.98 | 4.4 | 6 | 3 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 43.47 | 15.9 | 10 | 12.7 |
| A7 | 53.43 | 25 | 29 | 26.4 |
| A8 | 49.5 | 30.9 | 35 | 23 |
| A9 | 50.62 | 16.3 | 10.6 | 20.7 |
| A10 | 51.9 | 15.4 | 20 | 12 |
>TRINITY_DN42223_c0_g1_i6 from sample A6 / Example spliced isoformCTTTAAGCTCGAGCCCAAGGTGTGGCCATATCAACAATTAATGTTCACCCAGACACGGATATTTGAGGGTTTTCTCCAGGCTTCAGTCCCTCCTAGTTCGTTAATAATGGCTCTCTGGTTTTTGGTTTTCCATATCAGGTTCTTACCTCTGGCTGCAGATTTCGATTTTCAGAAAGGCGACTTCAAGGAATCGATCGTTG
GTCTGTGGAATACCATTCTTGAATCGAAATCTTGATAGGGACTACCAGAGGCGCTGCGAGAAGAAGGATCAATAAACCAGAGAAAATAAACAACAGAATATCTCTGAGGTCTCCAATGAATGTGAAGGAAAACAAATAAAGGCTGAGGATGATTGCTATGACATTGAATACGGAGAAGCTCTGGGTTTACTCCTTTTCTT
CTCTTTCGTCGGCGGCACAAGGTACGGGGTGGATAAAGATCATGGAAGTCACACACACGATGCCAGGTATGAGGGTGAGCATGAGCAGAAAAGAAGAACTACTGCTGGAGAAGAGGGCGCTGCAGATATCGGTGAAGATGGCGGTGCTGAGCGTGATATAACCCTTGAGAATTCCGACAACCCTTGAGAATTCCGACGAC
GGGGCCTCTGTTACTGCGGAAATTCCTGATGCACATCGCCAGCACGGCCGTGTTCATCCAAGTGGTGCCTCCCATGCACATATATATGCACATCTAACTTCTGTGAGAACCTAACGGAAGGTAAAATAATAAAAAATGGAAAAAAGAACAGAACCTTTGGAAATGAAAATCAAGAAATCTCAGCAGCCAATAGGTCAGTG
GTCGAATCATGTGGCTGACCACAAGCCACTGGGTGCCATAGCTGATGAAGCCTTCGAGAGAACCGATGAGCAAAATGAGCCAATGGGGGGAAATAATCAGATGCAAAGCCCCCAACCACACCAAATGCCTTCCAGAGACCAAAGAGACCAAACCAAGTATTCTAGAGCTAAATTGGTCCCTTGAGGATGTGCAGCACTTG
TGTGGTGTGGTATATGAAACTTGAAGAATACCTACATGGGATGTGAGCGTTTCTTTTGACGAAAATGTTGCAAAAGCAGCAAGTGGGAGGCAGCACCCATGGGATCTGTTTCAGCTCAAGACAGTCCCTGGGTAGTTTGAAGGTATGTCGGAGAAAATTTAAAGTTGGGCTTGGAATATTTTGCACCTGTTGGATTTTTC
ACATTCTGTATTTGATGCTTACAACCCACCCTTGCTTACATTCAACTAGATGTTTTGTTTCCCTGGTGATGGGCACCGATACATCTGTTTTTTCGTCTCGTGCTCTATTTTCTTCACCAGGGCCTACCCAAATGCCCAAAAGAGAGAAAATCTCATCTGACATAACTCCCAGCAATACCACCTTCCATAACATTGTGTTT
GGAATAGCGTCTTCTGCTAGCAAATGGAAGCAAAGAAAATAGTATGTTGATCTATGGTGGAAACCTGATTTTATGAGGGGATTTGTGTGGTTGGACCAAGAAATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGGTCTCAGAGGATACTTCTAGGTTTAGGTATACTCTTAAGAAAGCGTTGCGTTCAGCAAT
TACGATTTCAAGGATTGTTTCGGAGACATTCAAGCTCAATCTCTCAGATCTCCATTGGGTTGTCATGGGTGATGATGATACAGTTTTCTTCCCAGAAAATCTGTTTCAAGTGCTGTCCAAATATGACCATATCAGTACTACTACATTGGAACCAATTCAAAGAGTGTCGAGCAGAATGTTTTTCATTCTTATGACATGGC
TTTTGGAGGTGGGTGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGACAGCTGCATGGATCTATGGCAGTGATGCAAGTATACATGCTTGCTTGGCCGATCTTGGAGTCACTTCAACCAAGGAACCAGGATTTCATCAGGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGA
TCTAAGGGAATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAGGCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAATCTCCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCT
GTTTGGATGGGGAGGTCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAGGGGAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATG
ATGTTCATTTCATCCAAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTTATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAA
TAAGATATATGTTATTTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCAGTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCT
TTTGCTTTTTGGAGGAAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACT
GCCTTCCTGTCGACAAATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTG
>TRINITY_DN42223_c0_g1_i3 from sample A6 / Example unspliced isoform:TTGGATCGGTATTCGTATCTGTATGGTAGTGATGCAAGAATACATGCTTGCTTGGCAGATCTTGGAGTCCCTTTAACCAAGGAACCGGGATTTCATCAGGTTGATTTTCGTGGAAACTTGTTAGGATGGCTGTCTGCTCACCCACTAGCATCCTTGGTATCACTTCATCATTTAGATGCAATGGCACCCATATTCCCTAA
AATGAATCAAACACAGGCCTTCGGACATCTCTTTGAGGCAGTAAAGGCAGATTCTAGTAGGATTCTTCAACAGACTATCTGTTATTCTGTGTCATGAGGATACAACGTACATGTTTTTGATAGCATCCAATTCCCACGTGAACTTGAATCTCCTCAGCAGACTTTCATGCATTGGAGGAAAACTATGATAGATCAATTTA
TGTTCAACACTCGTAATGTTTCCAGGAATCCTTGCCTTAGGCCTGCTGTCTTATTTTTGGAAAGTGTGGATCTAAGGGAATCACCACTACCTATACAAGAGAAACTGGGGTTAGTTTCCATTTGGGTAAAAGTGCATTGCAGGCTCTGCAACAGATCAGAGTCCTATCACCAAAGTCACAACTGAACTGGAAGCAAgtat
gtgaacttttacagcctagtatttattttaacttctgactcgagtgagtaaaattaggaattatctacctcttgctatactaattaagaaaaattgtatgtatgtgcgtagTCTCCGAGGAGACATTGCTGTGATGTTCTTACCATCTTCCTTGAATAACAGCCTGGAGAATTAGATGAGAAGCTGTTTGGATGGGGAGG
TCATATATCCACAGTGAAAATGAACATTGAAATATTTTTGGGTCAATCAAACCCTATATGTTGATGTAAATATATGGACTATCATTGATTATCTAGACATGGCTTCCTCTAGGGGAGGAGGGGAGGAAGAAAGTTGGGCAACATGCATCTCTTGATTGATCAAAAGCCTAAATGAATGTGAAATGATGTTCATTTCATCC
AAAGAATTGTTTTGGGTCCTATCAAGTTTCAAGGCATGAAATTCAGAAAATATTCTTTAGTGTTAGAAAGTACACACACGAATCAGAATTAAAAAATACTCTGGTATTGATCTAAAGCATTACTCTCTGTATAGCGTTCTTTATTGCATGGCATGTTTTATCAAACAAAATAGCTATGAGCTAAATAAGATATATGTTAT
TTTTAATATCTGTGTTTCTTGCCATTGCAATTACCTTGAGATGTCATTTGCTAGTTATCTTAGTTGTGGAAACAGCTTGTCAGTATTTTGTCAGAGAGTTATCAGGACTATGTTATTCTTGCTTGTCATGTAGAGATGGTCAGTTTGTTTAAGATGGATGAATGCAACATTTTTCAGCTTTTGCTTTTGCTTTTTGGAGG
AAGTATGTTTTCTGGACAGTGGACGCTATTTGATCCAAGTGACATGGTCTGCTTGAAATCTTCAATGCCATCTTCAGAGGATGTAGGCCAGGATCATATAAAGGAACTTCCAAATTTTATTTTCCTTCTTGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTGTCGACA
AATCTATGGGCTTTGGGGGATGAAGGACCTAAGGATATTGTTCATCCAGCTGCTTGCATGGAGAAGAAATGTTACTGCCTTCCTG