sp|Q9M310|FBK77_ARATH ----> F-box/kelch-repeat protein At3g61590

Intron 1 GTATCCTCAG ... AATGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	47.37	5	6	3
A2	33.33	1	1	0
A3	55.56	2	2	3
A4	42.86	10	13	2
A5	100	0	3	2
A6	35.71	9	6	4
A7	52.5	19	20	22
A8	48	13	15	9
A9	39.13	7	5	4
A10	35.71	9	10	0

>TRINITY_DN47712_c0_g3_i4 from sample A7 / Example spliced isoform

ATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAACGGGGCGGACGGCCGTTCCCGTTTCTGAATCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGATGCAGGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCAACAGCA
CATTTCGCTGGAGTCTCTGCACAGAACGACCCTTGGCTTTCAATTTGGAGGCGCCTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGTTCTGTAGAGGCATTCAAGTGACAGGAACGCCAATATCTCTTCTCTGGTTTTCCAGATCCGAGGGAAGAAACAGT
AAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAA

>TRINITY_DN47712_c0_g3_i8 from sample A7 / Example unspliced isoform:

ATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAACGGGGCGGACGGCCGTTCCCGTTTCTGAATCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGATGCAGGTATTTCCAGATCCGAGGGAAGAAACAGTAAGCGCAACAGC
ACATTTCGCTGGAGTCTCTGCACAGAACGACCCTATGGCTTTCAATTTGGAGGCGCCTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGTTCTGTAGAGGCATTCAAGTGACAGGAACGCCAATATCTCTTCTCTGgtatcctcagg
caattttcgattctttttattttctctattctggtttgtggaatctcattgcattactcttcccgtttctcgttcttgaagaaaagaatgatgcagGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCA
TTTCTTAGTTGTGAA

Intron 2 GTATCCTCAG ... TGAAGAAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.86	6	6	3
A2	33.33	2	2	0
A3	47.37	5	6	3
A4	41.46	12	15	2
A5	100	0	4	2
A6	34.78	15	12	4
A7	46.9	30	29	24
A8	52.73	13	21	8
A9	38.89	11	7	7
A10	36.36	14	16	0

>TRINITY_DN43181_c0_g3_i10 from sample A6 / Example spliced isoform

TCTTGATCCGTGGACGCATCCACATATAGAAGGATCATGGGCTATATAATGGGAAATCGGAGATAATCGATGAGCTTTGACACATGTTTAGAAGATCGTTTCTTAGCTTTTTCATTCTTGATCTGTTATTTGTGGGTACGCATCTGGTCCCGAAGGAAGCCTTTCCAGCCGGTGGATCTGAGAGGCATATCTGAGGTTGT
GAAAGATATTAAAACGCCTGGTTTCCTCACACATTTTCACAGATTCACGCCCTTCATAAGGTGGCCATAACTGCTCATAGATGGGAGTTTGCTCGCAATTGGGCGTTTACAAATCTTTTCTAGTGTTTGAATAAGGCCTCTGATGAGCAGCCCCCATCTATAAACAGTTCATGAGCATCTACGGCGTAAGTTCAAGCCTG
TCTACTTTGAAATGTTATCACGTTGCGCATTGCTGAACAGAGACAAATGAAATTTGTTAGGGCATAAAATCAATGCACATTTAAATTTTAATGAAAATGGGTACATGATCCGAAGTTTTTTTTATGGATTAAGCTCAGAAATTGGGGTAATGTTACTCTCAGTTCTTCAACCTGAGATGAAAACAAATTAATATGCTACG
GCTAACATAACTTTACAATCAAGATTCTGCTGCATATAAAACTAGATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAACGGGGCGGACGGCCGTTCCCGTTTCTGAATCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGAT
GCAGGTATTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTAGAGGCATTCAAGTGACAGGAACG
CCAATATCTCTTCTCTGAATGATGCAGGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTA
GAGGCATTCAAGTGACAGGAACGCCAATATCTCTTCTCCGGTATCCTCAGGCAATTAATCCCAGCCTGCTGCTGAGGCGTCCACCTCTAG

>TRINITY_DN43181_c0_g3_i8 from sample A6 / Example unspliced isoform:

TCTTGATCCGTGGACGCATCCACATATAGAAGGATCATGGGCTATATAATGGGAAATCGGAGATAATCGATGAGCTTTGACACATGTTTAGAAGATCGTTTCTTAGCTTTTTCATTCTTGATCTGTTATTTGTGGGTACGCATCTGGTCCCGAAGGAAGCCTTTCCAGCCGGTGGATCTGAGAGGCATATCTGAGGTTGT
GAAAGATATTAAAACGCCTGGTTTCCTCACACATTTTCACAGATTCACGCCCTTCATAAGGTGGCCATAACTGCTCATAGATGGGAGTTTGCTCGCAATTGGGCGTTTACAAATCTTTTCTAGTGTTTGAATAAGGCCTCTGATGAGCAGCCCCCATCTAGAAACAGTTCATGAGCATCTATGGCGTAAGTTCAAGCCTA
TCTATCATATGGTTCCTTCTATAGGTTTGGTTGTTCTTCCTTCTATAAGCTTGGCGTAAGTTCAAGCCTGTCTACTTTGAAATGTTATCACGTTGCGCATTGCTGAACAGAGACAAATGAAATTTGTTAGGGCATAAAATCAATGCACATTTAAATTTTAATGAAAATGGGTACATGATCCGAAGTTTTTTTTATGGATT
AAGCTCAGAAATTGGGGTAATGTTACTCTCAGTTCTTCAACCTGAGATGAAAACAAATTAATATGCTACGGCTAACATAACTTTACAATCAAGATTCTGCTGCATATAAAACTAGATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAACGGGGCGGACGGCCGTTCCCGTTTCTGAA
TCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGATGCAGGTATTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATG
AATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTAGAGGCATTCAAGTGACAGGAACGCCAATATCTCTTCTCTGgtatcctcaggcaattttcgattctttttattttctctattctggtttgtggaatctcattgcattactcttcccgtttctcgttcttgaagaaaagAATGATGCAGGTTTTC
CAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTAGAGGCATTCAAGTGACAGGAACGCCAATATCTC
TTCTCCGGTATCCTCAGGCAATTAATCCCAGCCTGCTGCTGAGGCGTCCACCTCTAGTTTCTCCATATTGTGATCAAATTTGAAGGGTGGGGTCCCATTTCACTTTGAAGGGCTATGAGATATTGAACCTTTCAATGCTGCCATGTAAAAATAAGTTATTCTTTTCATTTGAAAATCTACTAATACATCAAAATTTCATT
GTGAA

Intron 3 GTATGACAAA ... ATCTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	1	1	1
A2	42.86	2	3	0
A3	100	0	5	4
A4	100	0	5	3
A5	63.64	2	3	4
A6	33.33	2	1	1
A7	35.14	12	6	7
A8	90.69	1	2.5	17
A9	44	7	5	6
A10	76.92	3	10	10

>TRINITY_DN44748_c2_g1_i5 from sample A8 / Example spliced isoform

CATGTTTTGAAGATCGTTTCTTAGCTTTTTCATTCTTGATCTGTTATTTGTGGGTACGCATCTGGTCCCGAAGGAAGCCTTTCCAGCCGGTGGATCTGAGAGGCATATCTGAGGTTGTGAAAGATATTAAAACGCCTGGTTTCCTCACACATTTTCACAGATTCACGCCCTTCATAAGGTGGCCATAACTGCTCATAGAT
GGGAGTTTGCTCGCAATTGGGCGTTTACAAATCTTTTCTAGTGTTTGAATAAGGCCTCTGATGAGCAGCCCCCATCTATAAACAGTTCATGAGCATCTATGGCGTAAGTTCAAGCCTATCTATCATATGGTTCCTTCTATAGGTTTGGTTGTTCTTCCCTCTATAGGCTTGGCGTAAGTTCAAGCCTGTCTACTTTGAAA
TGTTATCGCGTTGCGCATTGCTGAACAGAGACAAATGAAATTTGTTCGGGCATAAAATGAATGCACATTTAAATTTTTATGAAAATGGGTACATGATCCGAAGTTTTTTTTATGGATTAAGCTCAGAAATTGGGGTAATGTTACTCTCAGTTCTTCAACCTGAGATGAAAACAAATTAATATGCTACGGCTAACATAACT
TTACAATCAAGATTCTGCTGCATATAAAACTAGATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAACGGGGCGGACGGCCGTTCCCGTTTCTGAATCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGATGCAGGTTTTCCA
GATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTAGAGGCATTCAAGTGACAGGAACACCAATATCTCTT
CTCTGGTATCCTCAGGCAATTTTCGATTCTTTTTATTTTCTCTATTCTGGTTTGTGGAATCTCATTGCATTACTCTTCCCGTTTCTCGTTCTTGAAGAAAAGAATGATGCAGGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTG
GAGGCGCTTCGGCCCATTTCTTAGTTGTGAA

>TRINITY_DN44748_c2_g1_i3 from sample A8 / Example unspliced isoform:

CATGTTTTGAAGATCGTTTCTTAGCTTTTTCATTCTTGATCTGTTATTTGTGGGTACGCATCTGGTCCCGAAGGAAGCCTTTCCAGCCGGTGGATCTGAGAGGCATATCTGAGGTTGTGAAAGATATTAAAACGCCTGGTTTCCTCACACATTTTCACAGATTCACGCCCTTCATAAGGTGGCCATAACTGCTCATAGAT
GGGAGTTTGCTCGCAATTGGGCGTTTACAAATCTTTTCTAGTGTTTGAATAAGGCCTCTGATGAGCAGCCCCCATCTATAAACAGTTCATGAGCATCTATGGCGTAAGTTCAAGCCTATCTATCATATGGTTCCTTCTATAGGTTTGGTTGTTCTTCCCTCTATAGGCTTGGCGTAAGTTCAAGCCTGTCTACTTTGAAA
TGTTATCGCGTTGCGCATTGCTGAACAGAGACAAATGAAATTTGTTCGGGCATAAAATGAATGCACATTTAAATTTTTATGAAAATGGGTACATGATCCGAAGTTTTTTTTATGGATTAAGCTCAGAAATTGGGGTAATGTTACTCTCAGTTCTTCAACCTGAGgtatgacaaatttctttttgttttgtggattgattg
ctgtttcttttatctgtgcagatgaaaacaaattaatatgctacggctaattgctgtttcttttatctgtgcagATGAAAACAAATTAATATGCTACGGCTAACATAACTTTACAATCAAGATTCTGCTGCATATAAAACTAGATATAAGACAGCTGCTCTGTTATCAGAAACGGAACGACCCGGCCCAGAAACGGCAAC
GGGGCGGACGGCCGTTCCCGTTTCTGAATCCCTGAAACGGTGATTTCAGTAATGAGCTCCAAACTGTATTTGGGCTTGCTCTTGAAGAAAAGAATGATGCAGGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTC
GGCCCATTTCTTAGTTGTGAATTTAATGAATGAGAAGAGGGCATTCCACTCCTTGCAAACGCTACCAGATCTGTAGAGGCATTCAAGTGACAGGAACACCAATATCTCTTCTCTGGTATCCTCAGGCAATTTTCGATTCTTTTTATTTTCTCTATTCTGGTTTGTGGAATCTCATTGCATTACTCTTCCCGTTTCTCGTT
CTTGAAGAAAAGAATGATGCAGGTTTTCCAGATCCGAGGGAAGAAACAGTAAGCGCGACAGCACATTTCGCTGGAGTCTCTGCACAGAACGACCCATGGCTTTTAATTTGGAGGCGCTTCGGCCCATTTCTTAGTTGTGAA