sp|Q9LU44|SF1_ARATH ----> Splicing factor-like protein 1
Intron 1 GTACCCATTA ... TTCTTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.03 | 235 | 17 | 24 |
| A2 | 3.56 | 284 | 8 | 13 |
| A3 | 6.11 | 276.5 | 15 | 21 |
| A4 | 8.64 | 195.5 | 16 | 21 |
| A5 | 15.56 | 76 | 8 | 20 |
| A6 | 0 | 17 | 0 | 0 |
| A7 | 4.43 | 151 | 14 | 0 |
| A8 | 7.32 | 38 | 1 | 5 |
| A9 | 3.4 | 142 | 3 | 7 |
| A10 | 5.02 | 189.5 | 15 | 5 |
>TRINITY_DN114256_c1_g3_i5 from sample A3 / Example spliced isoformTAATGTTCGAATGATTTACAGGATTCAAATCAGAATCATAACAATTGTTGTTTCTATTTCAATAATAGCCGAATTTCCGCAAGCTACTTTTCTATTTCCGCAAAATAGTTTCATTTCAATTGTGCTGAAATTTAACTAGGACCGTGCATAGCACATCTCCAAACAATTCTTCTAAAACAACGTTAATTTTTTAAACGGTA
AAGATTTTCAAACTGATATCACCCATTTTCAAACTGATATCACCCATTTGCATTGAATACATGCACTGTCAAGCTCTGAGAACGCAAAGAGCACGGGAATACTACAGGAAATAATTTCTCAGCCTTTCACTCACAGGCTGTCCTGGGCAAAGAGCACGCGAATAGCACAGGAAACAATTTCTCAGCCTTAGACGCACAGC
ACGACAGTTCCAAAAGCTATGACTGAAATGGACCAGCATGGAGAAATGAGTCCTTCCCATTTGGATGATGGTTCCGAAGAACAGCAACAGGGCTATCATTTCGAGAGTGAAGGCATAGCTAGTCTGCAGGACAAATGCCCATCCTTCAGTCAAACTGCATCTCATGCATTGGAAACACCCACAAGTAAAGCAGAGACACA
GAATGTTTCAGAAAATATCAATAATGGAAAAGGAGGTTTAGAGGGTGCAGATGCTTTAGAATTGTCTGATGAAGCAGCAAACCAGCAAAATTGTGCACAGGCAACTCAGAGACATGAAAGTGGTGGAAGCTCTGGCAAAAGAAGGCACAGCACTTGTGATTCCATGCCTGAGGAGGGAGGAGAAGCAAATGAAGGTGAAT
GTAGTGGTAAGAAGAAGAGATCAAGATGGACTGCAGAAGAACCAAAAATTTCAATGCTAGGGCAAATAAAACTTCCAGATTTTATGAAGGAGTTAACTGATGTAGATCCTGAAGTGCAGGAACTAAGTATTAAGCTCTTTATTATCAACCAGAAACTTCAGACTGGAAATGTTATTGTTGCATCAGGGGATGGGCAAAGA
TCTCTGTCACCAGAGCCTCAATATAACAACTCGCGGATTA
>TRINITY_DN114256_c1_g3_i6 from sample A3 / Example unspliced isoform:TAATGTTCGAATGATTTACAGGATTCAAATCAGAATCATAACAATTGTTGTTTCTATTTCAATAATAGCCGAATTTCCGCAAGCTACTTTTCTATTTCCGCAAAATAGTTTCATTTCAATTGTGCTGAAATTTAACTAGGACCGTGCATAGCACATCTCCAAACAATTCTTCTAAAACAACGTTAATTTTTTAAACGGTA
AAGATTTTCAAACTGATATCACCCATTTTCAAACTGATATCACCCATTTGCATTGAATACATGCACTGTCAAGCTCTGAGAACGCAAAGAGCACGGGAATACTACAGGAAATAATTTCTCAGCCTTTCACTCACAGgtacccattactctatctgttctctttggccctggatatgttttgattttgtacaatgttggta
caaggtcaagattgctgttaatttcagcagaaatcttctatgattattggtctatcagtatcagatacaataataatgatggccatgggatcgattctcattccagtaaacaaacacattataggtcctgttgctaatgaaaaagggcgcgctcttgcttcttttcatgtttaatgggttattattgctcacgaatgcat
tattgtgtagcccttttgtccaggggtgttgtggatttcgttaaattaattgttcagcccttttgtacatgcccttttttcattttcgtagagcgtttgaatctaaacatattcttattagGCTGTCCTGGGCAAAGAGCACGCGAATAGCACAGGAAACAATTTCTCAGCCTTAGACGCACAGGTACCCATTCCTCTAT
CTAGTCTGTTCTCTTTGGCCCTGGATATGTTTTAATTTTGTACAAGGTCAAGATTGCTGGAAACTTGAGTTAATTTCAGCAGAAATTGTCTTCCATTAGTATCAGATACAATAATAATGATGGCCCATGGGATCGATTCTCATTCCGGTAAACACACATATTATAGGTTCTGTTGCTAATGAAAAAGGGCACGCTCTTGC
TTCTTTTCATGTTTAATGGGTTATTATTGCTCACGAATGCATTATTGTGTAACCTTTTTGTCCTGGGGTGTTGAGGATTTCGTCTGATTAATTGTGTTGCTCTCTTTGTACATGGCCTTTTTCCATTTTCGTGGAGCGTTTGAAATCTAAACATATTCTTATTAGGGGACCACACGTGAACATCTGATTTATGATTTCAT
TCATTATAGTCATGGTGATCCCGGGTACTCTCCAAATCAGCCTTCC
Intron 2 GCTGTCCTGG ... AGACGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.11 | 248 | 234 | 400 |
| A2 | 60.27 | 239 | 286 | 439 |
| A3 | 59.17 | 256 | 278 | 464 |
| A4 | 57.71 | 188 | 197 | 316 |
| A5 | 54.3 | 93 | 76 | 145 |
| A6 | 46.03 | 34 | 17 | 41 |
| A7 | 51.66 | 225 | 152 | 329 |
| A8 | 53.4 | 48 | 39 | 71 |
| A9 | 54.02 | 186 | 142 | 295 |
| A10 | 48.62 | 326 | 191 | 426 |
>TRINITY_DN114256_c1_g3_i2 from sample A3 / Example spliced isoformTAATGTTCGAATGATTTACAGGATTCAAATCAGAATCATAACAATTGTTGTTTCTATTTCAATAATAGCCGAATTTCCGCAAGCTACTTTTCTATTTCCGCAAAATAGTTTCATTTCAATTGTGCTGAAATTTAACTAGGACCGTGCATAGCACATCTCCAAACAATTCTTCTAAAACAACGTTAATTTTTTAAACGGTA
AAGATTTTCAAACTGATATCACCCATTTTCAAACTGATATCACCCATTTGCATTGAATACATGCACTGTCAAGCTCTGAGAACGCAAAGAGCACGGGAATACTACAGGAAATAATTTCTCAGCCTTTCACTCACAGCACGACAGTTCCAAAAGCTATGACTGAAATGGACCAGCATGGAGAAATGAGTCCTTCCCATTTG
GATGATGGTTCCGAAGAACAGCAACAGGGCTATCATTTCGAGAGTGAAGGCATAGCTAGTCTGCAGGACAAATGCCCATCCTTCAGTCAAACTGCATCTCATGCATTGGAAACACCCACAAGTAAAGCAGAGACACAGAATGTTTCAGAAAATATCAATAATGGAAAAGGAGGTTTAGAGGGTGCAGATGCTTTAGAATT
GTCTGATGAAGCAGCAAACCAGCAAAATTGTGCACAGGCAACTCAGAGACATGAAAGTGGTGGAAGCTCTGGCAAAAGAAGGCACAGCACTTGTGATTCCATGCCTGAGGAGGGAGGAGAAGCAAATGAAGGTGAATGTAGTGGTAAGAAGAAGAGATCAAGATGGACTGCAGAAGAACCAAAAATTTCAATGCTAGGGC
AAATAAAACTTCCAGATTTTATGAAGGAGTTAACTGATGTAGATCCTGAAGTGCAGGAACTAAGTATTAAGCTCTTTATTATCAACCAGAAACTTCAGACTGGAAATGTTATTGTTGCATCAGGGGATGGGCAAAGATCTCTGTCACCAGAGCCTCAATATAACAACTCGCGGATTA
>TRINITY_DN114256_c1_g3_i5 from sample A3 / Example unspliced isoform:TAATGTTCGAATGATTTACAGGATTCAAATCAGAATCATAACAATTGTTGTTTCTATTTCAATAATAGCCGAATTTCCGCAAGCTACTTTTCTATTTCCGCAAAATAGTTTCATTTCAATTGTGCTGAAATTTAACTAGGACCGTGCATAGCACATCTCCAAACAATTCTTCTAAAACAACGTTAATTTTTTAAACGGTA
AAGATTTTCAAACTGATATCACCCATTTTCAAACTGATATCACCCATTTGCATTGAATACATGCACTGTCAAGCTCTGAGAACGCAAAGAGCACGGGAATACTACAGGAAATAATTTCTCAGCCTTTCACTCACAGgctgtcctgggcaaagagcacgcgaatagcacaggaaacaatttctcagccttagacgcacagC
ACGACAGTTCCAAAAGCTATGACTGAAATGGACCAGCATGGAGAAATGAGTCCTTCCCATTTGGATGATGGTTCCGAAGAACAGCAACAGGGCTATCATTTCGAGAGTGAAGGCATAGCTAGTCTGCAGGACAAATGCCCATCCTTCAGTCAAACTGCATCTCATGCATTGGAAACACCCACAAGTAAAGCAGAGACACA
GAATGTTTCAGAAAATATCAATAATGGAAAAGGAGGTTTAGAGGGTGCAGATGCTTTAGAATTGTCTGATGAAGCAGCAAACCAGCAAAATTGTGCACAGGCAACTCAGAGACATGAAAGTGGTGGAAGCTCTGGCAAAAGAAGGCACAGCACTTGTGATTCCATGCCTGAGGAGGGAGGAGAAGCAAATGAAGGTGAAT
GTAGTGGTAAGAAGAAGAGATCAAGATGGACTGCAGAAGAACCAAAAATTTCAATGCTAGGGCAAATAAAACTTCCAGATTTTATGAAGGAGTTAACTGATGTAGATCCTGAAGTGCAGGAACTAAGTATTAAGCTCTTTATTATCAACCAGAAACTTCAGACTGGAAATGTTATTGTTGCATCAGGGGATGGGCAAAGA
TCTCTGTCACCAGAGCCTCAATATAACAACTCGCGGATTA