sp|P0DI13|SA1B2_ARATH ----> SUMO-activating enzyme subunit 1B-2
Intron 1 GTTATTATGA ... GGGCATCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.65 | 289.9 | 0 | 100 |
| A2 | 23.86 | 290.4 | 0 | 91 |
| A3 | 22.73 | 248.2 | 1 | 73 |
| A4 | 28.05 | 207.8 | 1 | 81 |
| A5 | 26.85 | 130.8 | 0 | 48 |
| A6 | 39.02 | 25 | 1 | 16 |
| A7 | 26.65 | 178.9 | 0 | 65 |
| A8 | 24.41 | 92.9 | 0 | 30 |
| A9 | 26.28 | 115 | 0 | 41 |
| A10 | 23.96 | 165 | 0 | 52 |
>TRINITY_DN108748_c0_g1_i28 from sample A4 / Example spliced isoformTTGGCATGATACTTATTCTCTCATTTGTTTAAATGTTTAAGCTCTAAATCTTTTCAGTTTTACACAGATGCTTGAGGATTCATGTCTCATCAAAGAAAACTTTCTGCTAGTTTTAACTTGTTTGGTGATGGGTGTGGCAGGACATTTCAGATGGCAGGGAAATCGAATAAGGCACGAAACAAAGGAAAAGGAGTAAATTC
AAAGAATCCTGCTCAGAGTGACCCTTCAGTGGATCTAGAAACTGCTGCACCTGAAACTTGTTTGGAGCAAGACCAAGCCCTTGATCACAGTGTGCAAAATTCAGAGAAATTGAAGACTCCTGCTGCAAATGAACTTTCTTTGGAGCCAGATCAAGCCCTTGATCAGTGTGTGCAGAGTTTAGAGAAATCAAAGACTCCTA
GTCCTGTTGCAAATGGGTCAGAAGTTTTAGAGAAAGGACCTTCTACCAAAGATTCACATATTTCAGAGAATGGAAAGGTGGCAGATTCCGACAAAGCAGATAAGCAAGGAAATGGGGAACTTCGCTTGTATCCTGTTACTGTCAAGGGACCATGTGGGGAAAAACTTGAGCTGCAGATAAACCCTGGAGATTCTGTGATG
GATCTGCGGCAGTTTCTTCTTGATGCTCCAGAGACCTGCTTTTTTACCTGTTATGACCTGATTATGCTCATGAAAGATGGCTCCCGCTATCAGCTTGCAGATTATTTAGAAATTGGTGATGTTGGTGATATCACTACAGGTGGTTGCTCATTAGAAATGGTTACAGGTAGGTAACCTGAATTCTTAGTATTCAAAAGTGG
GAGCCAAATTGGAAATTTATGAACATATCCCATGAAGGTACACAAAATTCATGCTAGCATTCACTCTGCCATTTAAGAAGACTGACTCACAATTAACTGGATCACGTTATCCAGCATTATATGATGACAGGTCTGTAAGGTCTCATGTACGGCGCATCAGAGATCTTGTTTCTACACCTTCTCTCCACTCATCACTTTCA
ACAACATTTGCTATGGAGTATGAAGCCAACCAACATGCTCCTGGAGGGGAGAGGAAGTCAGAGGCCCCTGAACTTGAAGGATTGGGTTTTATGGATGATCCCACTGGTTTGCTTGAGAATCTTGTTGTATGTCCATCTTCTCAAGAGATCAAATGTGTAGAAAGCATTGCATTTTCTTCATTCAATCCTCCTCCAGGCTA
CAGGAGGCTTCTTGGAGATTTAATTTACCTAGATGTGTTGACATTAGAAGGTCGGAGTTGCTGCATTACAGCACATACACGTGGCTTTTACATCAATGCCACAACTGGAAACATATTGGAACCCAGACCTGCAAAGCCTGCTCATGAATCAACCTCATTAGTTGGATTGCTTCGCCAAATCAGTGACAAGTTCAAAAAAG
GGTTTCGTGAAGTTCTAGAAAGGAGGGCGTCTGGTCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGTTCATCCCCCACCAGCTCATAGGCGGGATGTTTCTAGAGCTGAGGATGCTTTGGCTCTACCTTATGGGACTGACTCGATAGGCATGCAGAGAGACTGGAATGAGGAGCTACAG
TCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTCTTTAAGGTAAGCTGCGATTTTGTTGATGCAGCAATAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCACATGTATGTTCATAACAACATATTCTTTAGCTTTGC
TGTCGATGCCGACTTCGCACAAATGCAGCAGTCATATGAACAGGGGACAAAGTTGGAACATGCTAGGCCATCAGAGAAGGTTGAAAGTGCTGTGTGCAACTCTTTATTAGATCAGAATCATCTAGAGAAAACTGAAAGTACAAAATCTGAAGTCTTACCAGATCAAAAGGATTTAGAGGGCCAAATAAATGTGGCTAAGG
AGCCTACAAGTGAAGATTCAGGACTAAAAATCCTGGACAAGGAAAAGGAAGTTTGTTCTGTGGTGGATAAAAATTCTGGAGAAAATGATGCTTCACAATTGACTGACAATGAGCAGGCAACCTACGCATCAGCAAATAATGATTTAAAGGGAACAAAGGCATACAATTCTGCAGATATTCCAGGACTTTACACTTTAGCT
ATGTCGATTGTTGATTACAGAGGACATAGGGTTGTTGCACAGAGCATAATTCCAGGGATCCTACAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAGAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATATAAAGGAGCACGAGGTGCTTGATGG
CTCTTGCAATAAAGTAAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACAACTGCAAGGGATGCAAACTACGTAGGTTCAGGATCACGTTACTGTGTCTTAAGGCCTGAGCTTGTTGCTACCTTTTGCCAGGTTGAAAGTGAAGAAAGATTAAAGA
AGGAGATTCAACTAGAGGCCACTGAAGGTTCTGCTTCGCAGGAGGAAGCCCCAGAAATACTGCTCAACCCCAATGTTTTGACGGACTTTAAGCTGGCTGGTGACCCCGAGGAAATAGCTGCTGATGAATCATTGGTAAAGAAGGTAGGGACATACCTTGTGGATGTAGTTCTTCCCAAGTTTGTGCAGGACCTTAGTAGT
CTGGAAGTTTCGCCAATGGATGGGCAAACTCTAACTGAGGCACTGCATGCACATGGTATCAATATGCGCTACATTGGGAAAGTGGCAAATATGGCGAAGCATTTGCCGCATATTTTGGATCTTTGTATTGTTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCT
GGGAGGTGCTATTGCACACTTCTTCAATTGTTTTCTTGGTCGTGATGCACCCGTTGGCTCAAAAGTTGGAGGAGCGTCAACAGGAGACAAGTCTCGGAAGAAAGGAAGAGGTGGGCAATCAAAAAAGCCAACGAACCAGTTATCTTCTGGAACTGATAATGCTTCAAAACCGCCAGGGGGTGCTTCTACCAAAGATACTA
GGAATCCTTTGCAAGGTAAAAATGTTGGACAAAATCAAGCATCATATCTGTGTATAACCTCCGAGCTAGTCTGGATTGATATCCAGGAGTGTGTCAAGTTCAAGTATCAGTTTGACTTACCCGAAGATGTGAAAATAAGAGTGAAGAAGATGTCAACTTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCA
CGGATATATGAGCTTGATGCGGAGGCTCCATTCAAAGCACCGGACATATTGGACATGCATGCAGTAGCAAAGCACTCTGCCCCTGTTTGTGCCGATGCCCGTGATCTTATAGAAACTGGCAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTC
TGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAACGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTTTACCATGGATTGAACCAAACAG
AGCTCGCATTGCGGCATATGGCTCAGACATTGCTTTTACTAAATGTCTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGACATAGGAAGGATGAATGTAGCATTGCGTTATCTTCAGGAAGCCTTAAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAAACA
GCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTACAAACTATCACTTCAGCATGAACGGAGCACTTACAACATATTGGCAAAACAACTTGGTGAAGATGATTCAAGGACTCGGGACTCGGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGTAAATGCACAGAAGCAAAAAGGACA
GACTGTGGATGCAGTTACTGCTCAAAAAGCTGTAGATGCTCTAAAGGCTCGTCCTGATTTGATTCAGGCCTTTCAGATGGCAACTGGAGGATCTGCTGCAGTTCGTCCACGTACCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATTGGTGACGTACTTCCTAGAGGCAGGGGCATGGATGAACGTGGAGCACGAG
CAGCAGCCGAGGTTCGTAAGAAAGCTGCTGCAAAAGGCCTTAATGTTCGGCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCCCACCAAATGATTCTCCCTCAACATCCACTCAGGAAGCAGGCATCGAGAGAAGTACAAATGTTGAG
AATGAAGTAGAAGATACAAAAGTTTGCGGAGAAGGAAGTAGTGACAATGTATCATTGGAAAATACAGAAGGAAAAACTCCATTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAAAAGCAAAAGCCAAAGCCAAACGTTACGGCAGAATGCTAAGGTGATTTGGAATGCAAAGAGTATTGAAATTCAGTTAGAGCTAG
AATAAAAATTGAATGACCAGTTGTTACTATTCTGGGGTCTGGAAAAATAATAGAAAGGATTTAGTGTTTCGTTCATCAAGGAATGACCCTCAGTTTTGCGGCACAGCAGTATGGGTTGGAAAACCTAATTGTGAGATTTTAATTCTTTTCTCAGATGGGCAGAAGGGGTTATAGATTTCTCGTTAATGTAGAGAAGCCAG
CGTAGCATCCCACCAGTCCTGATAGTGTTATTGCAGGCAATAAATCAGATTGTAATTCAGAAAATATGAGCGAAGTAATACTGAAGGGTGTTGGTTGAAGTTAGAATTTTGTATTTATGAAGGCATTAAACTGAATTCTGTCCCATTTGGTTCCACCTTTCTCTTGTATCTTTCAGTTCATTTGATCAAAGGGTTATCTA
ATATATTAATCTTAGCGATTGCATTAAGATGTCAATGCAGATGATGTTTACAACGAGGTTCAACTAAATGTATTTGTTCATTTGTACTTTTGAAAGCAAAACCTGGATAGCACTCACATTTTCAGAGGTGAGCTATAAGCCCCGGCAAAGCAAAGATAGTTGCCGGGTTATCAACAATTTGTACTATTTATATCATAGCA
TGACATACTCCGGGCACACAATCTGATTTGCCTCGTGTCAATCTTCGCATTCTTTTTAACAAAGAGGAAAAGCCATGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTGTGGGAGTATTTCAGCGTGATAGATTTGTAGACAATTAAA
>TRINITY_DN108748_c0_g1_i16 from sample A4 / Example unspliced isoform:TTGTTGCTACCTTTTGCCAGgttattatgatgagggattctgacttctgcactattcttctactttggtttcgcaaaatcattcaaacattgtgcttcatttggaatagtgttttacattaacttaatgttttgggcatcaagGTTGAAAGTGAAGAAAGATTAAAGAAGGAGATTCAACTAGAGGCCACTGAAGGTTCT
GCTTCGCAGGAGGAAGCCCCAGAAATACTGCTCAACCCCAATGTTTTGACGGACTTTAAGCTGGCTGGTGACCCCGAGGAAATAGCTGCTGATGAATCATTGGTAAAGAAGGTAGGGACATACCTTGTGGATGTAGTTCTTCCCAAGTTTGTGCAGGACCTTAGTAGTCTGGAAGTTTCGCCAATGGATGGGCAAACTCT
AACTGAGGCACTGCATGCACATGGTATCAATATGCGCTACATTGGGAAAGTGGCAAATATGGCGAAGCATTTGCCGCATATTTTGGATCTTTGTATTGTTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATTGCACACTTCTTCAATTGTT
TTCTTGGTCGTGATGCACCCGTTGGCTCAAAAGTTGGAGGAGCGTCAACAGGAGACAAGTCTCGGAAGAAAGGAAGAGGTGGGCAATCAAAAAAGCCAACGAACCAGTTATCTTCTGGAACTGATAATGCTTCAAAACCGCCAGGGGGTGCTTCTACCAAAGATACTAGGAATCCTTTGCAAGGTAAAAATGTTGGACAA
AATCAAGCATCATATCTGTGTATAACCTCCGAGCTAGTCTGGATTGATATCCAGGAGTGTGTCAAGTTCAAGTATCAGTTTGACTTACCCGAAGATGTGAAAATAAGAGTGAAGAAGATGTCAACTTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGATATATGAGCTTGATGCGGAGGCTCCATT
CAAAGCACCGGACATATTGGACATGCATGCAGTAGCAAAGCACTCTGCCCCTGTTTGTGCCGATGCCCGTGATCTTATAGAAACTGGCAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAGAGGTGGCAAATTGTT
GCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAACGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTTTACCATGGATTGAACCAAACAGAGCTCGCATTGCGGCATATGGCTCAGACATTG
CTTTTACTAAATGTCTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGACATAGGAAGGATGAATGTAGCATTGCGTTATCTTCAGGAAGCCTTAAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAAACAGCTGTTTGTTATCATGCCCTTGCAATTGCCTT
CAATTGCATGGGTGCTTACAAACTATCACTTCAGCATGAACGGAGCACTTACAACATATTGGCAAAACAACTTGGTGAAGATGATTCAAGGACTCGGGACTCGGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGTAAATGCACAGAAGCAAAAAGGACAGACTGTGGATGCAGTTACTGCTCAAAAAGCTG
TAGATGCTCTAAAGGCTCGTCCTGATTTGATTCAGGCCTTTCAGATGGCAACTGGAGGATCTGCTGCAGTTCGTCCACGTACCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATTGGTGACGTACTTCCTAGAGGCAGGGGCATGGATGAACGTGGAGCACGAGCAGCAGCCGAGGTTCGTAAGAAAGCTGCTGCA
AAAGGCCTTAATGTTCGGCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCCCACCAAATGATTCTCCCTCAACATCCACTCAGGAAGCAGGCATCGAGAGAAGTACAAATGTTGAGAATGAAGTAGAAGATACAAAAGTTTGCGGAGA
AGGAAGTAGTGACAATGTATCATTGGAAAATACAGAAGGAAAAACTCCATTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAAAAGCAAAAGCCAAAGCCAAACGTTACGGCAGAATGCTAAGGTGATTTGGAATGCAAAGAGTATTGAAATTCAGTTAGAGCTAGAATAAAAATTGAATGACCAGTTGTTACTATTC
TGGGGTCTGGAAAAATAATAGAAAGGATTTAGTGTTTCGTTCATCAAGGAATGACCCTCAGTTTTGCGGCACAGCAGTATGGGTTGGAAAACCTAATTGTGAGATTTTAATTCTTTTCTCAGATGGGCAGAAGGGGTTATAGATTTCTCGTTAATGTAGAGAAGCCAGCGTAGCATCCCACCAGTCCTGATAGTGTTATT
GCAGGCAATAAATCAGATTGTAATTCAGAAAATATGAGCGAAGTAATACTGAAGGGTGTTGGTTGAAGTTAGAATTTTGTATTTATGAAGGCATTAAACTGAATTCTGTCCCATTTGGTTCCACCTTTCTCTTGTATCTTTCAGTTCATTTGATCAAAGGGTTATCTAATATATTAATCTTAGCGATTGCATTAAGATGT
CAATGCAGATGATGTTTACAACGAGGTTCAACTAAATGTATTTGTTCATTTGTACTTTTGAAAGCAAAACCTGGATAGCACTCACATTTTCAGAGGTGAGCTATAAGCCCCGGCAAAGCAAAGATAGTTGCCGGGTTATCAACAATTTGTACTATTTATATCATAGCATGACATACTCCGGGCACACAATCTGATTTGCC
TCGTGTCAATCTTCGCATTCTTTTTAACAAAGAGGAAAAGCCATGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTGTGGGAGTATTTCAGCGTGATAGATTTGTAGACAATTAAA
Intron 2 GTACACTGTT ... AATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.62 | 241 | 51 | 115 |
| A2 | 27.33 | 222 | 33 | 134 |
| A3 | 23.49 | 184 | 39 | 74 |
| A4 | 25.57 | 131 | 37 | 53 |
| A5 | 27.06 | 93 | 26 | 43 |
| A6 | 18.31 | 29 | 9 | 4 |
| A7 | 25 | 123 | 15 | 67 |
| A8 | 27.68 | 64 | 10 | 39 |
| A9 | 25.49 | 95 | 23 | 42 |
| A10 | 24.22 | 122 | 17 | 61 |
>TRINITY_DN108748_c0_g1_i28 from sample A4 / Example spliced isoformTTGGCATGATACTTATTCTCTCATTTGTTTAAATGTTTAAGCTCTAAATCTTTTCAGTTTTACACAGATGCTTGAGGATTCATGTCTCATCAAAGAAAACTTTCTGCTAGTTTTAACTTGTTTGGTGATGGGTGTGGCAGGACATTTCAGATGGCAGGGAAATCGAATAAGGCACGAAACAAAGGAAAAGGAGTAAATTC
AAAGAATCCTGCTCAGAGTGACCCTTCAGTGGATCTAGAAACTGCTGCACCTGAAACTTGTTTGGAGCAAGACCAAGCCCTTGATCACAGTGTGCAAAATTCAGAGAAATTGAAGACTCCTGCTGCAAATGAACTTTCTTTGGAGCCAGATCAAGCCCTTGATCAGTGTGTGCAGAGTTTAGAGAAATCAAAGACTCCTA
GTCCTGTTGCAAATGGGTCAGAAGTTTTAGAGAAAGGACCTTCTACCAAAGATTCACATATTTCAGAGAATGGAAAGGTGGCAGATTCCGACAAAGCAGATAAGCAAGGAAATGGGGAACTTCGCTTGTATCCTGTTACTGTCAAGGGACCATGTGGGGAAAAACTTGAGCTGCAGATAAACCCTGGAGATTCTGTGATG
GATCTGCGGCAGTTTCTTCTTGATGCTCCAGAGACCTGCTTTTTTACCTGTTATGACCTGATTATGCTCATGAAAGATGGCTCCCGCTATCAGCTTGCAGATTATTTAGAAATTGGTGATGTTGGTGATATCACTACAGGTGGTTGCTCATTAGAAATGGTTACAGGTAGGTAACCTGAATTCTTAGTATTCAAAAGTGG
GAGCCAAATTGGAAATTTATGAACATATCCCATGAAGGTACACAAAATTCATGCTAGCATTCACTCTGCCATTTAAGAAGACTGACTCACAATTAACTGGATCACGTTATCCAGCATTATATGATGACAGGTCTGTAAGGTCTCATGTACGGCGCATCAGAGATCTTGTTTCTACACCTTCTCTCCACTCATCACTTTCA
ACAACATTTGCTATGGAGTATGAAGCCAACCAACATGCTCCTGGAGGGGAGAGGAAGTCAGAGGCCCCTGAACTTGAAGGATTGGGTTTTATGGATGATCCCACTGGTTTGCTTGAGAATCTTGTTGTATGTCCATCTTCTCAAGAGATCAAATGTGTAGAAAGCATTGCATTTTCTTCATTCAATCCTCCTCCAGGCTA
CAGGAGGCTTCTTGGAGATTTAATTTACCTAGATGTGTTGACATTAGAAGGTCGGAGTTGCTGCATTACAGCACATACACGTGGCTTTTACATCAATGCCACAACTGGAAACATATTGGAACCCAGACCTGCAAAGCCTGCTCATGAATCAACCTCATTAGTTGGATTGCTTCGCCAAATCAGTGACAAGTTCAAAAAAG
GGTTTCGTGAAGTTCTAGAAAGGAGGGCGTCTGGTCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGTTCATCCCCCACCAGCTCATAGGCGGGATGTTTCTAGAGCTGAGGATGCTTTGGCTCTACCTTATGGGACTGACTCGATAGGCATGCAGAGAGACTGGAATGAGGAGCTACAG
TCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTCTTTAAGGTAAGCTGCGATTTTGTTGATGCAGCAATAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCACATGTATGTTCATAACAACATATTCTTTAGCTTTGC
TGTCGATGCCGACTTCGCACAAATGCAGCAGTCATATGAACAGGGGACAAAGTTGGAACATGCTAGGCCATCAGAGAAGGTTGAAAGTGCTGTGTGCAACTCTTTATTAGATCAGAATCATCTAGAGAAAACTGAAAGTACAAAATCTGAAGTCTTACCAGATCAAAAGGATTTAGAGGGCCAAATAAATGTGGCTAAGG
AGCCTACAAGTGAAGATTCAGGACTAAAAATCCTGGACAAGGAAAAGGAAGTTTGTTCTGTGGTGGATAAAAATTCTGGAGAAAATGATGCTTCACAATTGACTGACAATGAGCAGGCAACCTACGCATCAGCAAATAATGATTTAAAGGGAACAAAGGCATACAATTCTGCAGATATTCCAGGACTTTACACTTTAGCT
ATGTCGATTGTTGATTACAGAGGACATAGGGTTGTTGCACAGAGCATAATTCCAGGGATCCTACAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAGAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATATAAAGGAGCACGAGGTGCTTGATGG
CTCTTGCAATAAAGTAAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACAACTGCAAGGGATGCAAACTACGTAGGTTCAGGATCACGTTACTGTGTCTTAAGGCCTGAGCTTGTTGCTACCTTTTGCCAGGTTGAAAGTGAAGAAAGATTAAAGA
AGGAGATTCAACTAGAGGCCACTGAAGGTTCTGCTTCGCAGGAGGAAGCCCCAGAAATACTGCTCAACCCCAATGTTTTGACGGACTTTAAGCTGGCTGGTGACCCCGAGGAAATAGCTGCTGATGAATCATTGGTAAAGAAGGTAGGGACATACCTTGTGGATGTAGTTCTTCCCAAGTTTGTGCAGGACCTTAGTAGT
CTGGAAGTTTCGCCAATGGATGGGCAAACTCTAACTGAGGCACTGCATGCACATGGTATCAATATGCGCTACATTGGGAAAGTGGCAAATATGGCGAAGCATTTGCCGCATATTTTGGATCTTTGTATTGTTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCT
GGGAGGTGCTATTGCACACTTCTTCAATTGTTTTCTTGGTCGTGATGCACCCGTTGGCTCAAAAGTTGGAGGAGCGTCAACAGGAGACAAGTCTCGGAAGAAAGGAAGAGGTGGGCAATCAAAAAAGCCAACGAACCAGTTATCTTCTGGAACTGATAATGCTTCAAAACCGCCAGGGGGTGCTTCTACCAAAGATACTA
GGAATCCTTTGCAAGGTAAAAATGTTGGACAAAATCAAGCATCATATCTGTGTATAACCTCCGAGCTAGTCTGGATTGATATCCAGGAGTGTGTCAAGTTCAAGTATCAGTTTGACTTACCCGAAGATGTGAAAATAAGAGTGAAGAAGATGTCAACTTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCA
CGGATATATGAGCTTGATGCGGAGGCTCCATTCAAAGCACCGGACATATTGGACATGCATGCAGTAGCAAAGCACTCTGCCCCTGTTTGTGCCGATGCCCGTGATCTTATAGAAACTGGCAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTC
TGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAACGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTTTACCATGGATTGAACCAAACAG
AGCTCGCATTGCGGCATATGGCTCAGACATTGCTTTTACTAAATGTCTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGACATAGGAAGGATGAATGTAGCATTGCGTTATCTTCAGGAAGCCTTAAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAAACA
GCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTACAAACTATCACTTCAGCATGAACGGAGCACTTACAACATATTGGCAAAACAACTTGGTGAAGATGATTCAAGGACTCGGGACTCGGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGTAAATGCACAGAAGCAAAAAGGACA
GACTGTGGATGCAGTTACTGCTCAAAAAGCTGTAGATGCTCTAAAGGCTCGTCCTGATTTGATTCAGGCCTTTCAGATGGCAACTGGAGGATCTGCTGCAGTTCGTCCACGTACCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATTGGTGACGTACTTCCTAGAGGCAGGGGCATGGATGAACGTGGAGCACGAG
CAGCAGCCGAGGTTCGTAAGAAAGCTGCTGCAAAAGGCCTTAATGTTCGGCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCCCACCAAATGATTCTCCCTCAACATCCACTCAGGAAGCAGGCATCGAGAGAAGTACAAATGTTGAG
AATGAAGTAGAAGATACAAAAGTTTGCGGAGAAGGAAGTAGTGACAATGTATCATTGGAAAATACAGAAGGAAAAACTCCATTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAAAAGCAAAAGCCAAAGCCAAACGTTACGGCAGAATGCTAAGGTGATTTGGAATGCAAAGAGTATTGAAATTCAGTTAGAGCTAG
AATAAAAATTGAATGACCAGTTGTTACTATTCTGGGGTCTGGAAAAATAATAGAAAGGATTTAGTGTTTCGTTCATCAAGGAATGACCCTCAGTTTTGCGGCACAGCAGTATGGGTTGGAAAACCTAATTGTGAGATTTTAATTCTTTTCTCAGATGGGCAGAAGGGGTTATAGATTTCTCGTTAATGTAGAGAAGCCAG
CGTAGCATCCCACCAGTCCTGATAGTGTTATTGCAGGCAATAAATCAGATTGTAATTCAGAAAATATGAGCGAAGTAATACTGAAGGGTGTTGGTTGAAGTTAGAATTTTGTATTTATGAAGGCATTAAACTGAATTCTGTCCCATTTGGTTCCACCTTTCTCTTGTATCTTTCAGTTCATTTGATCAAAGGGTTATCTA
ATATATTAATCTTAGCGATTGCATTAAGATGTCAATGCAGATGATGTTTACAACGAGGTTCAACTAAATGTATTTGTTCATTTGTACTTTTGAAAGCAAAACCTGGATAGCACTCACATTTTCAGAGGTGAGCTATAAGCCCCGGCAAAGCAAAGATAGTTGCCGGGTTATCAACAATTTGTACTATTTATATCATAGCA
TGACATACTCCGGGCACACAATCTGATTTGCCTCGTGTCAATCTTCGCATTCTTTTTAACAAAGAGGAAAAGCCATGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTGTGGGAGTATTTCAGCGTGATAGATTTGTAGACAATTAAA
>TRINITY_DN108748_c0_g1_i5 from sample A4 / Example unspliced isoform:TGTTCATAACAACATATTCTTTAGCTTTGCTGTCGATGCCGACTTCGCACAAATGCAGCAGTCATATGAACAGGGGACAAAGTTGGAACATGCTAGGCCATCAGAGAAGGTTGAAAGTGCTGTGTGCAACTCTTTATTAGATCAGAATCATCTAGAGAAAACTGAAAGTACAAAATCTGAAGTCTTACCAGATCAAAAGG
ATTTAGAGGGCCAAATAAATGTGGCTAAGGAGCCTACAAGTGAAGATTCAGGACTAAAAATCCTGGACAAGGAAAAGGAAGTTTGTTCTGTGGTGGATAAAAATTCTGGAGAAAATGATGCTTCACAATTGACTGACAATGAGCAGGCAACCTACGCATCAGCAAATAATGATTTAAAGGGAACAAAGGCATACAATTCT
GCAGATATTCCAGGACTTTACACTTTAGCTATGTCGATTGTTGATTACAGAGGACATAGGGTTGTTGCACAGAGCATAATTCCAGGGATCCTACAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAGAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACT
TCATATAAAGGAGCACGAGGTGCTTGATGGCTCTTGCAATAAAGTAAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGgtacactgttttgaaatattacttttttcttttattcatttactcttatcttccaacttgtatttgtttgattggaatttatttttctatctcagagcatgtgt
tttgacttttttaaaattttacagACATTATCTGCTAGATTTAATGAGAACAACTGCAAGGGATGCAAACTACGTAGGTTCAGGATCACGTTACTGTGTCTTAAGGCCTGAGCTTGTTGCTACCTTTTGCCAGGTTGAAAGTGAAGAAAGATTAAAGAAGGAGATTCAACTAGAGGCCACTGAAGGTTCTGCTTCGCAGG
AGGAAGCCCCAGAAATACTGCTCAACCCCAATGTTTTGACGGACTTTAAGCTGGCTGGTGACCCCG
Intron 3 GTAGGTAACC ... CGTTATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.61 | 165 | 34 | 68 |
| A2 | 23.67 | 129 | 23 | 57 |
| A3 | 19.46 | 180 | 27 | 60 |
| A4 | 23.89 | 129 | 29 | 52 |
| A5 | 25.37 | 94.1 | 22 | 42 |
| A6 | 18.92 | 15 | 1 | 6 |
| A7 | 20.47 | 68 | 6 | 29 |
| A8 | 27.27 | 8 | 0 | 6 |
| A9 | 23.81 | 24 | 3 | 12 |
| A10 | 19.12 | 55 | 9 | 17 |
>TRINITY_DN108748_c0_g1_i22 from sample A4 / Example spliced isoformTATTTAAAATGGAGAGGTGAAAGTTCAAAGCTTGACCCATTTTGGTGCGCAGTGCGCTCAACCTGTTTTACATGCAAAATAGCTAACACAATTTTATCTTGGCAAAGAAACCCTAGGGCTACTATATAATAATTGCATAAAACCCCAAATAAATTTTCTCATAGGCTAAAACCCCACATCATTGAATTGTGCTGCGCGGA
GCGTGAGAGCAAAGAGCTTCCAGGTTTTTAGCTCCTATCATCCTTCTCTGGTCGCGGCTTCAACCCTTCACTTTCATTTCTCCTAGCAGCAGCTTCAACGCCGCCCTCAGCAGGTGGATATAGGACATTTCAGATGGCAGGGAAATCGAATAAGGCACGAAACAAAGGAAAAGGAGTAAATTCAAAGAATCCTGCTCAGA
GTGACCCTTCAGTGGATCTAGAAACTGCTGCACCTGAAACTTGTTTGGAGCAAGACCAAGCCCTTGATCACAGTGTGCAAAATTCAGAGAAATTGAAGACTCCTGCTGCAAATGAACTTTCTTTGGAGCCAGATCAAGCCCTTGATCAGTGTGTGCAGAGTTTAGAGAAATCAAAGACTCCTAGTCCTGTTGCAAATGGG
TCAGAAGTTTTAGAGAAAGGACCTTCTACCAAAGATTCACATATTTCAGAGAATGGAAAGGTGGCAGATTCCGACAAAGCAGATAAGCAAGGAAATGGGGAACTTCGCTTGTATCCTGTTACTGTCAAGGGACCATGTGGGGAAAAACTTGAGCTGCAGATAAACCCTGGAGATTCTGTGATGGATCTGCGGCAGTTTCT
TCTTGATGCTCCAGAGACCTGCTTTTTTACCTGTTATGACCTGATTATGCTCATGAAAGATGGCTCCCGCTATCAGCTTGCAGATTATTTAGAAATTGGTGATGTTGGTGATATCACTACAGGTGGTTGCTCATTAGAAATGGTTACAGCATTATATGATGACAGGTCTGTAAGGTCTCATGTACGGCGCATCAGAGATC
TTGTTTCTACACCTTCTCTCCACTCATCACTTTCAACAACATTTGCTATGGAGTATGAAGCCAACCAACATGCTCCTGGAGGGGAGAGGAAGTCAGAGGCCCCTGAACTTGAAGGATTGGGTTTTATGGATGATCCCACTGGTTTGCTTGAGAATCTTGTTGTATGTCCATCTTCTCAAGAGATCAAATGTGTAGAAAGC
ATTGCATTTTCTTCATTCAATCCTCCTCCAGGCTACAGGAGGCTTCTTGGAGATTTAATTTACCTAGATGTGTTGACATTAGAAGGTCGGAGTTGCTGCATTACAGCACATACACGTGGCTTTTACATCAATGCCACAACTGGAAACATATTGGAACCCAGACCTGCAAAGCCTGCTCATGAATCAACCTCATTAGTTGG
ATTGCTTCGCCAAATCAGTGACAAGTTCAAAAAAGGGTTTCGTGAAGTTCTAGAAAGGAGGGCGTCTGGTCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGTTCATCCCCCACCAGCTCATAGGCGGGATGTTTCTAGAGCTGAGGATGCTTTGGCTCTACCTTATGGGACTGACTCGA
TAGGCATGCAGAGAGACTGGAATGAGGAGCTACAGTCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTCTTTAAGGTAAGCTGCGATTTTGTTGATGCAGCAATAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCAC
ATGTATGTTCATAACAACATATTCTTTAGCTTTGCTGTCGATGCCGACTTCGCACAAATGCAGCAGTCATATGAACAGGGGACAAAGTTGGAACATGCTAGGCCATCAGAGAAGGTTGAAAGTGCTGTGTGCAACTCTTTATTAGATCAGAATCATCTAGAGAAAACTGAAAGTACAAAATCTGAAGTCTTACCAGATCA
AAAGGATTTAGAGGGCCAAATAAATGTGGCTAAGGAGCCTACAAGTGAAGATTCAGGACTAAAAATCCTGGACAAGGAAAAGGAAGTTTGTTCTGTGGTGGATAAAAATTCTGGAGAAAATGATGCTTCACAATTGACTGACAATGAGCAGGCAACCTACGCATCAGCAAATAATGATTTAAAGGGAACAAAGGCATACA
ATTCTGCAGATATTCCAGGACTTTACACTTTAGCTATGTCGATTGTTGATTACAGAGGACATAGGGTTGTTGCACAGAGCATAATTCCAGGGATCCTACAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAGAAGATATGCTGGAATGATAAATTCCATGCAAAGGTAACAACTAGACTTTTA
TTTCAAAGTTCAGTTTTAGAAGTTTGGAGATTTATGCCACAGCATTGAGAATACCTACTGGGAACATATGGTTGTCTTATTAACACACATTTCTGTGATACATTTCAAATGGGGTCTGCA
>TRINITY_DN108748_c0_g1_i13 from sample A4 / Example unspliced isoform:TATTTAAAATGGAGAGGTGAAAGTTCAAAGCTTGACCCATTTTGGTGCGCAGTGCGCTCAACCTGTTTTACATGCAAAATAGCTAACACAATTTTATCTTGGCAAAGAAACCCTAGGGCTACTATATAATAATTGCATAAAACCCCAAATAAATTTTCTCATAGGCTAAAACCCCACATCATTGAATTGTGCTGCGCGGA
GCGTGAGAGCAAAGAGCTTCCAGGTTTTTAGCTCCTATCATCCTTCTCTGGTCGCGGCTTCAACCCTTCACTTTCATTTCTCCTAGCAGCAGCTTCAACGCCGCCCTCAGCAGGTGGATATAGGACATTTCAGATGGCAGGGAAATCGAATAAGGCACGAAACAAAGGAAAAGGAGTAAATTCAAAGAATCCTGCTCAGA
GTGACCCTTCAGTGGATCTAGAAACTGCTGCACCTGAAACTTGTTTGGAGCAAGACCAAGCCCTTGATCACAGTGTGCAAAATTCAGAGAAATTGAAGACTCCTGCTGCAAATGAACTTTCTTTGGAGCCAGATCAAGCCCTTGATCAGTGTGTGCAGAGTTTAGAGAAATCAAAGACTCCTAGTCCTGTTGCAAATGGG
TCAGAAGTTTTAGAGAAAGGACCTTCTACCAAAGATTCACATATTTCAGAGAATGGAAAGGTGGCAGATTCCGACAAAGCAGATAAGCAAGGAAATGGGGAACTTCGCTTGTATCCTGTTACTGTCAAGGGACCATGTGGGGAAAAACTTGAGCTGCAGATAAACCCTGGAGATTCTGTGATGGATCTGCGGCAGTTTCT
TCTTGATGCTCCAGAGACCTGCTTTTTTACCTGTTATGACCTGATTATGCTCATGAAAGATGGCTCCCGCTATCAGCTTGCAGATTATTTAGAAATTGGTGATGTTGGTGATATCACTACAGGTGGTTGCTCATTAGAAATGGTTACAGgtaggtaacctgaattcttagtattcaaaagtgggagccaaattggaaatt
tatgaacatatcccatgaaggtacacaaaattcatgctagcattcactctgccatttaagaagactgactcacaattaactggatcacgttatccagCATTATATGATGACAGGTCTGTAAGGTCTCATGTACGGCGCATCAGAGATCTTGTTTCTACACCTTCTCTCCACTCATCACTTTCAACAACATTTGCTATGGA
GTATGAAGCCAACCAACATGCTCCTGGAGGGGAGAGGAAGTCAGAGGCCCCTGAACTTGAAGGATTGGGTTTTATGGATGATCCCACTGGTTTGCTTGAGAATCTTGTTGTATGTCCATCTTCTCAAGAGATCAAATGTGTAGAAAGCATTGCATTTTCTTCATTCAATCCTCCTCCAGGCTACAGGAGGCTTCTTGGAG
ATTTAATTTACCTAGATGTGTTGACATTAGAAGGTCGGAGTTGCTGCATTACAGCACATACACGTGGCTTTTACATCAATGCCACAACTGGAAACATATTGGAACCCAGACCTGCAAAGCCTGCTCATGAATCAACCTCATTAGTTGGATTGCTTCGCCAAATCAGTGACAAGTTCAAAAAAGGGTTTCGTGAAGTTCTA
GAAAGGAGGGCGTCTGGTCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGTTCATCCCCCACCAGCTCATAGGCGGGATGTTTCTAGAGCTGAGGATGCTTTGGCTCTACCTTATGGGACTGACTCGATAGGCATGCAGAGAGACTGGAATGAGGAGCTACAGTCATGTAGGGAATTTCC
TCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTCTTTAAGGTAAGCTGCGATTTTGTTGATGCAGCAATAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCACATGTATGTTCATAACAACATATTCTTTAGCTTTGCTGTCGATGCCGACTTCG
CACAAATGCAGCAGTCATATGAACAGGGGACAAAGTTGGAACATGCTAGGCCATCAGAGAAGGTTGAAAGTGCTGTGTGCAACTCTTTATTAGATCAGAATCATCTAGAGAAAACTGAAAGTACAAAATCTGAAGTCTTACCAGATCAAAAGGATTTAGAGGGCCAAATAAATGTGGCTAAGGAGCCTACAAGTGAAGAT
TCAGGACTAAAAATCCTGGACAAGGAAAAGGAAGTTTGTTCTGTGGTGGATAAAAATTCTGGAGAAAATGATGCTTCACAATTGACTGACAATGAGCAGGCAACCTACGCATCAGCAAATAATGATTTAAAGGGAACAAAGGCATACAATTCTGCAGATATTCCAGGACTTTACACTTTAGCTATGTCGATTGTTGATTA
CAGAGGACATAGGGTTGTTGCACAGAGCATAATTCCAGGGATCCTACAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAGAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATATAAAGGAGCACGAGGTGCTTGATGGCTCTTGCAATAAAGTAA
AAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACAACTGCAAGGGATGCAAACTACGTAGGTTCAGGATCACGTTACTGTGTCTTAAGGCCTGAGCTTGTTGCTACCTTTTGCCAGGTTGAAAGTGAAGAAAGATTAAAGAAGGAGATTCAACTAGAG
GCCACTGAAGGTTCTGCTTCGCAGGAGGAAGCCCCAGAAATACTGCTCAACCCCAATGTTTTGACGGACTTTAAGCTGGCTGGTGACCCCGAGGAAATAGCTGCTGATGAATCATTGGTAAAGAAGGTAGGGACATACCTTGTGGATGTAGTTCTTCCCAAGTTTGTGCAGGACCTTAGTAGTCTGGAAGTTTCGCCAAT
GGATGGGCAAACTCTAACTGAGGCACTGCATGCACATGGTATCAATATGCGCTACATTGGGAAAGTGGCAAATATGGCGAAGCATTTGCCGCATATTTTGGATCTTTGTATTGTTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATTGCAC
ACTTCTTCAATTGTTTTCTTGGTCGTGATGCACCCGTTGGCTCAAAAGTTGGAGGAGCGTCAACAGGAGACAAGTCTCGGAAGAAAGGAAGAGGTGGGCAATCAAAAAAGCCAACGAACCAGTTATCTTCTGGAACTGATAATGCTTCAAAACCGCCAGGGGGTGCTTCTACCAAAGATACTAGGAATCCTTTGCAAGGT
AAAAATGTTGGACAAAATCAAGCATCATATCTGTGTATAACCTCCGAGCTAGTCTGGATTGATATCCAGGAGTGTGTCAAGTTCAAGTATCAGTTTGACTTACCCGAAGATGTGAAAATAAGAGTGAAGAAGATGTCAACTTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGATATATGAGCTTGA
TGCGGAGGCTCCATTCAAAGCACCGGACATATTGGACATGCATGCAGTAGCAAAGCACTCTGCCCCTGTTTGTGCCGATGCCCGTGATCTTATAGAAACTGGCAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAG
AGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAACGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTTTACCATGGATTGAACCAAACAGAGCTCGCATTGCGGCAT
ATGGCTCAGACATTGCTTTTACTAAATGTCTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGACATAGGAAGGATGAATGTAGCATTGCGTTATCTTCAGGAAGCCTTAAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAAACAGCTGTTTGTTATCATGC
CCTTGCAATTGCCTTCAATTGCATGGGTGCTTACAAACTATCACTTCAGCATGAACGGAGCACTTACAACATATTGGCAAAACAACTTGGTGAAGATGATTCAAGGACTCGGGACTCGGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGTAAATGCACAGAAGCAAAAAGGACAGACTGTGGATGCAGTTA
CTGCTCAAAAAGCTGTAGATGCTCTAAAGGCTCGTCCTGATTTGATTCAGGCCTTTCAGATGGCAACTGGAGGATCTGCTGCAGTTCGTCCACGTACCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATTGGTGACGTACTTCCTAGAGGCAGGGGCATGGATGAACGTGGAGCACGAGCAGCAGCCGAGGTTCGT
AAGAAAGCTGCTGCAAAAGGCCTTAATGTTCGGCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCCCACCAAATGATTCTCCCTCAACATCCACTCAGGAAGCAGGCATCGAGAGAAGTACAAATGTTGAGAATGAAGTAGAAGATAC
AAAAGTTTGCGGAGAAGGAAGTAGTGACAATGTATCATTGGAAAATACAGAAGGAAAAACTCCATTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAAAAGCAAAAGCCAAAGCCAAACGTTACGGCAGAATGCTAAGGTGATTTGGAATGCAAAGAGTATTGAAATTCAGTTAGAGCTAGAATAAAAATTGAATGAC
CAGTTGTTACTATTCTGGGGTCTGGAAAAATAATAGAAAGGATTTAGTGTTTCGTTCATCAAGGAATGACCCTCAGTTTTGCGGCACAGCAGTATGGGTTGGAAAACCTAATTGTGAGATTTTAATTCTTTTCTCAGATGGGCAGAAGGGGTTATAGATTTCTCGTTAATGTAGAGAAGCCAGCGTAGCATCCCACCAGT
CCTGATAGTGTTATTGCAGGCAATAAATCAGATTGTAATTCAGAAAATATGAGCGAAGTAATACTGAAGGGTGTTGGTTGAAGTTAGAATTTTGTATTTATGAAGGCATTAAACTGAATTCTGTCCCATTTGGTTCCACCTTTCTCTTGTATCTTTCAGTTCATTTGATCAAAGGGTTATCTAATATATTAATCTTAGCG
ATTGCATTAAGATGTCAATGCAGATGATGTTTACAACGAGGTTCAACTAAATGTATTTGTTCATTTGTACTTTTGAAAGCAAAACCTGGATAGCACTCACATTTTCAGAGGTGAGCTATAAGCCCCGGCAAAGCAAAGATAGTTGCCGGGTTATCAACAATTTGTACTATTTATATCATAGCATGACATACTCCGGGCAC
ACAATCTGATTTGCCTCGTGTCAATCTTCGCATTCTTTTTAACAAAGAGGAAAAGCCATGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTGTGGGAGTATTTCAGCGTGATAGATTTGTAGACAATTAAA
Intron 4 GTGATCCTAT ... AAATGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.22 | 55 | 33 | 41 |
| A2 | 42.86 | 40 | 26 | 34 |
| A3 | 46.03 | 34 | 20 | 38 |
| A4 | 28.09 | 32 | 8 | 17 |
| A5 | 21.95 | 32 | 10 | 8 |
| A6 | 62.62 | 40 | 56 | 78 |
| A7 | 67.61 | 46 | 84 | 108 |
| A8 | 67.37 | 70 | 107 | 182 |
| A9 | 64.33 | 56 | 83 | 119 |
| A10 | 68.49 | 23 | 52 | 48 |
>TRINITY_DN108748_c0_g1_i27 from sample A4 / Example spliced isoformTATTTAAAATGGAGAGGTGAAAGTTCAAAGCTTGACCCATTTTGGTGCGCAGTGCGCTCAACCTGTTTTACATGCAAAATAGCTAACACAATTTTATCTTGGCAAAGAAACCCTAGGGCTACTATATAATAATTGCATAAAACCCCAAATAAATTTTCTCATAGGCTAAAACCCCACATCATTGAAATTGTGTTGCGCGG
GGCGTGAGAGCAAAGAGCTTCCAGGTTTTTATCTCCCATCATCCTTCTTTGGTTGCAGCTTCAACTCTTCACTTCCATTTCTCTTAGCGACAGCTTCAACGCCGTCCTCAGCAGGTGGATATAGGTTGTTGCCTTCAACATGGATGGGGAGGTATTGACTGACCAGGAAACTGCTGTCTATGATCGTCAAATCCGTGTCT
GGGGTGTTGATGCACAAAGAAGATTGAGCAAATCTCGTGTTTTGGTTATTGGAATGACTGGTGTGGTTGCTGAGGGAGTGTGAAAGACATATCTGCCAATTTTCTGGACAATTTTGATGCCGTTGTTCTTGGGCGTGCCTCAATTATTGTGAAAAAGCAGGTTAATGAAATGTGTCGCAAGAGGCCACAAAGAATTGCAT
TTTATTCAGTGGATTGTAGAGGTAGCTGTGGAGAAATATTTGTTGATTTGCAAAACCACACATATACTCAGAAAAAGCAGGAAGATGCTATTGCTTCTCAAATTTGCTTTCCAAGCTTAGAGGAGTCCATGTCAGTTCGCTGGAGTAGTCTGCCTAAAAAAGCAACTAAGCTCTATTTTGCTCTAAGAATTATAGAAGAG
TTTGAGCAGGCTGAGGGTCGACAACCAGGTCATGTGTCGTCTGCAGATTTGGAATCTGTGCTAAGCCTCCAGAAGAAACTCTGTGAAGAACAGGGGTTACCTGAATCTCGAATACCAGATATTCTCTTGGAAAGAATTGTTGATGCTGGGACGAGAGAATTCCCTCCAGTTTGTGCAATTATTGGGGGCATCCTTGGACA
GGAAGTCATCAAGGCAATGTCTTGTAAAGAGAAATATATATCATGAAAATCATGTGCAAGACTGCGCTTCAAGCAAGTTGAGGAGAATGTGTATATTTTTCTGCATGAATGATACATTTTTGTCATCATCATATGCAAAGAGCAGGGCAATGGTATTGAACAGGCATGCGGTTGCGTTGAAGTAGATAAGCTTAGCAGTA
GGTGGTCACTGAGAGCAATGTAAAGGATTGTGTGCATTTTAGTCTGACAATAAGGATGCCAAAATTTGCAATAGTATGAACACAATCTCACATAAGCAACCATCGAACTGGATTATATTTTAACATTAAAAGATAAGTTCATTACTTGTGCTCATGCTTGATCTTAGAAAATGCTTGTTTCAGAATGTGTATATATGATA
TA
>TRINITY_DN108748_c0_g1_i17 from sample A4 / Example unspliced isoform:TATTTAAAATGGAGAGGTGAAAGTTCAAAGCTTGACCCATTTTGGTGCGCAGTGCGCTCAACCTGTTTTACATGCAAAATAGCTAACACAATTTTATCTTGGCAAAGAAACCCTAGGGCTACTATATAATAATTGCATAAAACCCCAAATAAATTTTCTCATAGGCTAAAACCCCACATCATTGAAATTGTGTTGCGCGG
GGCGTGAGAGCAAAGAGCTTCCAGGTTTTTATCTCCCATCATCCTTCTTTGGTTGCAGCTTCAACTCTTCACTTCCATTTCTCTTAGCGACAGCTTCAACGCCGTCCTCAGCAGGTGGATATAGGTTGTTGCCTTCAACATGGATGGGGAGGTATTGACTGACCAGGAAACTGCTGTCTATGATCGTCAAATCCGTGTCT
GGGGTGTTGATGCACAAAGAAGATTGAGCAAATCTCGTGTTTTGGTTATTGGAATGACTGGTGTGGTTGCTGAGCTATGCAAAAACATAGTCTTGGCAGGTATTGGTAATTTGACCTTGATGGATGATAGTCCAGTCACAGCAGAATCTTCATCAGCAAATTTTTTGATTCTTGCCGAGGATTCCAATCACAAGGGAAAA
TCAATTGCTGAAGTCTGCCGGGAATCATTAAGGGATTTCAATCCTATGGTCCATGTCTCTGTTGAAAAAGGGAGTGTGAAAGACATATCTGCCAATTTTCTGGACAATTTTGATGCCGTTGTTCTTGGGCGTGCCTCAATTATTGTGAAAAAGCAGGTTAATGAAATGTGTCGCAAGAGGCCACAAAGAATTGCATTTTA
TTCAGTGGATTGTAGAGGTAGCTGTGGAGAAATATTTGTTGATTTGCAAAACCACACATATACTCAGAAAAAGCAGGAAGATGCTATTGCTTCTCAAATTTGCTTTCCAAGCTTAGAGGAGTCCATGTCAGTTCGCTGGAGTAGTCTGCCTAAAAAAGCAACTAAGCTCTATTTTGCTCTAAGAATTATAGAAGAGTTTG
AGCAGGCTGAGGGTCGACAACCAGGTCATGTGTCGTCTGCAGATTTGGAATCTGTGCTAAGCCTCCAGAAGAAACTCTGTGAAGAACAGGGGTTACCTGAATCTCGAATACCAGATATTCTCTTGGAAAGAATTGTTGATGCTGGGACGAGAGAATTCCCTCCAGTTTGTGCAATTATTGGGGGCATCCTTGGACAGGAA
GTCATCAAGGCAATGTCTTGTAAAGgtgatcctattaaaaactttttcttctttgatgtaatggatgggaaggggataatcgaggatatatctaaccaagacaaaaactgatgctctgaaatgtttagAGAAATATATATCATGAAAATCATGTGCAAGACTGCGCTTCAAGCAAGTTGAGGAGAATGTGTATATTTTTC
TGCATGAATGATACATTTTTGTCATCATCATATGCAAAGAGCAGGGCAATGGTATTGAACAGGCATGCGGTTGCGTTGAAGTAGATAAGCTTAGCAGTAGGTGGTCACTGAGAGCAATGTAAAGGATTGTGTGCATTTTAGTCTGACAATAAGGATGCCAAAATTTGCAATAGTATGAACACAATCTCACATAAGCAACC
ATCGAACTGGATTATATTTTAACATTAAAAGATAAGTTCATTACTTGTGCTCATGCTTGATCTTAGAAAATGCTTGTTTCAGAATGTGTATATATGATATA