sp|A2XZ94|PSBS2_ORYSI ----> Photosystem II 22 kDa protein 2, chloroplastic
Intron 1 GTATGGCAGC ... ATTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16 | 168 | 34 | 30 |
| A2 | 13.92 | 167 | 15 | 39 |
| A3 | 16 | 168 | 22 | 42 |
| A4 | 15.86 | 122 | 22 | 24 |
| A5 | 10.47 | 124 | 7 | 22 |
| A6 | 12.08 | 1157 | 102 | 216 |
| A7 | 12.57 | 1102 | 118 | 199 |
| A8 | 12.14 | 897 | 88 | 160 |
| A9 | 13.87 | 1037 | 123 | 211 |
| A10 | 13.16 | 828 | 80 | 171 |
>TRINITY_DN105270_c0_g1_i2 from sample A3 / Example spliced isoformGGGCGAGTGGTTGCAGTTGAGTAGCGTGGTGGAACTTAGTCCGTCCGATAAAATCACTCACCCCAAACTTATTCTCTGCAAACAAATAAAGTCCATGCGTCTCCTAATCGGTGTCTCCAGTTAACGCAACGATGGCGCAGTCCGTTCTCCCAGCTAGAGGAGTTACTAGTTGTGTAGGAGGAATAGCAAGGTTCAGCCAG
AGGCCGCTGCCGCCCCCGCCCGCCTTGCCCGTCGCCAGGGGCCTCAGGGTTCGGCCGCTAAACGCCGCTCAGATATCGTGGTCACCGTTGGGAGAGCTACCGAGCGCCAATCCCACGGGGCTCAGCGCCCGCACTGGAAAGACGGTGGCGTTGTTTCGACCCAAAGAAAAGGCAGCCGCCCCGCCCAAGAAGGGAAGAGC
GGCTGTGCCGGAGAAGAAGTTAAAGGTGGAGGACGGCATCTTCGGAACCTCCGGAGGGATCGGTTTCACCAAGGCCAACGAGCTGTTCGTGGGCCGCGTCGCCATGATCGGTTTCGCTGCGTCGCTGCTAGGGGAAGCAATAACGGGGAAGGGAATTCTACAGCAGCTAAATTTGGAGACGGGAATTCCTATATATGAAG
CAGAGCCTCTGCTGCTCTTCTTTATTCTTTTCACGCTGCTGGGAGCCATAGGAGCCTTAGGCGACAGAGGGAAATTTGTGGACGATGATATTCCAGCTGACAGGCCTCTGATAGACCCTGGAAAGGGCTTCAGATCGGCTGTTGGCCTCAGTGATAGCGGGCCTCTGTTTGGGTTTACTAAATCGAACGAACTGTTCGTG
GGGAGATTGGCTCAGCTGGGAATCGCCTTCTCCATCATCGGAGAAATCATAACAGGGAAGGGGGCGCTGGCGCAGCTCAACATCGAGACGGGAGTCCCCGTAAGCGAGATCGAGCCACTGGTGTTGTTCAACGTTGCATTCTTCTTGTTTGCGGCTTTGAATCCTGGCAACGGTAAATTCGTCACGGATGTTGATGAAGA
AGAAGAATAAGAAGGATCGATCAAAAAATATGTTGCCGAGATTGTAATTTTCGGACGATTAAAGCAGTTTAGTTTTTTAGGTTTTAGGTTTTTTGAATTTGTTGTAATACAGTTGTTTTGTAAGCAAGAATCCACGCCACACAAGCAGTTTTGTTATCTTTAAAACCTGCAAGGATATTATACCAGTTGTTTTGTAAGCA
AGAATACATACCGCAGTTTTGTTATCTTTAAAACCAAGGATATTATACCCGGTATTATTGCTTGCCATTTTTTGTTTGGATAAGGTTTTCAAAAGTTTTGTGGCGTTCCATGAACACAGCACAGAAGTAGAACTGTACAAAACTGGGCTGAGCCCATCCATCTGTGAAGCTGCCACGACATGACTAATTTCTTGGAAGGA
ATATAACGTCACAGTACCATTCATCTCTTTTTTGCTACAACGTGGCATCGCTGTTATGCGTGGTGGCCCACATTTGGTGTGTCGTTTATTTGGACCGAGTTATCTTACTCGTTCATGGGAAAGGCAAAATTTCTATGGCTGTATGTTTAAGTGAATATATTGTGATATATATAAAAATTTGATTGGGTGTATCATTTACA
TGTTTTTATTTTAGAATTTTGGGTGGACGAGGGTTGATGTTTTTACTAGATTGTATGAGTATGTGACAAATTCAAATTGATTTTATGGT
>TRINITY_DN105270_c0_g1_i3 from sample A3 / Example unspliced isoform:GGGCGAGTGGTTGCAGTTGAGTAGCGTGGTGGAACTTAGTCCGTCCGATAAAATCACTCACCCCAAACTTATTCTCTGCAAACAAATAAAGTCCATGCGTCTCCTAATCGGTGTCTCCAGTTAACGCAACGATGGCGCAGTCCGTTCTCCCAGCTAGAGGAGTTACTAGTTGTGTAGGAGGAATAGCAAGGTTCAGCCAG
AGGCCGCTGCCGCCCCCGCCCGCCTTGCCCGTCGCCAGGGGCCTCAGGGTTCGGCCGCTAAACGCCGCTCAGATATCGTGGTCACCGTTGGGAGAGCTACCGAGCGCCAATCCCACGGGGCTCAGCGCCCGCACTGGAAAGACGGTGGCGTTGTTTCGACCCAAAGAAAAGGCAGCCGCCCCGCCCAAGAAGGGAAGAGC
GGCTGTGCCGGAGAAGAAGTTAAAGGTGGAGGACGGCATCTTCGGAACCTCCGGAGGGATCGGTTTCACCAAGGCCAACGAGCTGTTCGTGGGCCGCGTCGCCATGATCGGTTTCGCTGCGTCGCTGCTAGGGGAAGCAATAACGGGGAAGGGAATTCTACAGCAGCTAAATTTGGAGACGGGAATTCCTATATATGAAG
CAGAGCCTCTGCTGCTCTTCTTTATTCTTTTCACGCTGCTGGGAGCCATAGGAGCCTTAGGCGACAGAGGGAAATTTGTGGACGATGATATTCCAGCTGACAGGCCTCTGATAGACCCTGGAAAGGGCTTCAGATCGGCTGTTGGCCTCAGTGATAGCGgtatggcagcaatttccattaggtttattctttaattcgcg
tttggtgggtcaatttgtgtttatattgttgttgctgcttgttgttgttggtataggtttaataattgtcgcaattttgaatataattggtgggatagatggatttcatttcatttattctggttcaattttgtcgagacattttctggtttggatgactagcttaccgttgctcgactaccattcacaatatgtgagaa
agtttgttgagcttttgaatatgtcgccgaaaaaaatataatgtatactaaaataaaataaaaaacattttgcgaaatgcttatttgtagtttttcaatttgtgcagGGCCTCTGTTTGGGTTTACTAAATCGAACGAACTGTTCGTGGGGAGATTGGCTCAGCTGGGAATCGCCTTCTCCATCATCGGAGAAATCATAA
CAGGGAAGGGGGCGCTGGCGCAGCTCAACATCGAGACGGGAGTCCCCGTAAGCGAGATCGAGCCACTGGTGTTGTTCAACGTTGCATTCTTCTTGTTTGCGGCTTTGAATCCTGGCAACGGTAAATTCGTCACGGATGTTGATGAAGAAGAAGAATAAGAAGGATCGATCAAAAAATATGTTGCCGAGATTGTAATTTTC
GGACGATTAAAGCAGTTTAGTTTTTTAGGTTTTAGGTTTTTTGAATTTGTTGTAATACAGTTGTTTTGTAAGCAAGAATCCACGCCACACAAGCAGTTTTGTTATCTTTAAAACCTGCAAGGATATTATACCAGTTGTTTTGTAAGCAAGAATACATACCGCAGTTTTGTTATCTTTAAAACCAAGGATATTATACCCGG
TATTATTGCTTGCCATTTTTTGTTTGGATAAGGTTTTCAAAAGTTTTGTGGCGTTCCATGAACACAGCACAGAAGTAGAACTGTACAAAACTGGGCTGAGCCCATCCATCTGTGAAGCTGCCACGACATGACTAATTTCTTGGAAGGAATATAACGTCACAGTACCATTCATCTCTTTTTTGCTACAACGTGGCATCGCT
GTTATGCGTGGTGGCCCACATTTGGTGTGTCGTTTATTTGGACCGAGTTATCTTACTCGTTCATGGGAAAGGCAAAATTTCTATGGCTGTATGTTTAAGTGAATATATTGTGATATATATAAAAATTTGATTGGGTGTATCATTTACATGTTTTTATTTTAGAATTTTGGGTGGACGAGGGTTGATGTTTTTACTAGATT
GTATGAGTATGTGACAAATTCAAATTGATTTTATGGT
Intron 2 GTAAGCAGCA ... TGTTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.56 | 198 | 15.5 | 36.5 |
| A2 | 14.88 | 163 | 20.5 | 28.5 |
| A3 | 14.95 | 185 | 16 | 32.5 |
| A4 | 14.12 | 152 | 22 | 25 |
| A5 | 10.57 | 131 | 14.5 | 15.5 |
| A6 | 15.27 | 1146 | 96.5 | 206.5 |
| A7 | 15.37 | 1272 | 108 | 231 |
| A8 | 12.26 | 891 | 63 | 124.5 |
| A9 | 14.05 | 1021 | 95 | 167 |
| A10 | 14.41 | 864 | 70 | 145.5 |
>TRINITY_DN113056_c0_g1_i1 from sample A1 / Example spliced isoformGGAAGGGCGAGTGGTTGCAGTTGAGTAGCGTGGTGGAACTTAGTCCGTCCGATAAAATCACTCACCCCAAACTTATTCTCTGCAAACAAATAAAGTCCATGCGTCTCCTAATCGGTGTCTCCAGTTAACGCAACGATGGCGCAGTCCGTTCTCCCAGCTAGAGGAGTTACTAGTTGTGTAGGAGGAATAGCAAGGTTCAG
CCAGAGGCCGCTGCCGCCCCCGCCCGCCTTGCCCGTCGCCAGGGGCCTCAGGGTTCGGCCGCTAAACGCCGCTCAGATATCGTGGTCACCGTTGGGAGAGCTACCGAGCGCCAATCCCACGGGGCTCAGCGCCCGCACTGGAAAGACGGTGGCGTTGTTTCGACCCAAAGAAAAGGCAGCCGCCCCGCCCAAGAAGGGAA
GAGCGGCTGTGCCGGAGAAGAAGTTAAAGGTGGAGGACGGCATCTTCGGAACCTCCGGAGGGATCGGTTTCACCAAGGCCAACGAGCTGTTCGTGGGCCGCGTCGCCATGATCGGTTTCGCTGCGTCGCTGCTGGGGGAAGCAATAACGGGGAAGGGAATTCTACAGCAGCTAAATTTGGAGACGGGAATTCCTATATAT
GAAGCAGAGCCTCTGCTGCTCTTCTTTATTCTTTTCACGCTGCTGGGAGCCATAGGAGCCTTAGGCGACAGAGGGAAATTTGTGGACGATGATATTCCAGCTGACAGGCCTCTGATAGACCCTGGAAAGGGCTTCAGATCGGCTGTTGGCCTCAGTGATAGCGGGCCTCTGTTTGGGTTTACTAAATCGAACGAACTGTT
CGTGGGGAGATTGGCTCAGCTGGGAATCGCCTTCTCCATCATCGGAGAAATCATAACAGGGAAGGGGGCGCTGGCGCAGCTCAACATCGAGACGGGAGTCCCCGTAAGCGAGATCGAGCCACTGGTGTTGTTCAACGTTGCATTCTTCTTGTTTGCGGCTTTGAATCCTGGCAACGGTAAATTCGTCACGGATGTTGATG
AAGAAGAAGAATAAGAAGGATCGATCAAAAAATATGTTGCCGAGATTGTAATTTTCGGACGATTAAAGCAGTTTAGTTTTTTAGGTTTTAGGTTTTTTGAATTTGTTGTAATACAGTTGTTTTGTAAGCAAGAATCCACGCCACACAAGCAGTTTTGTTATCTTTAAAACCTGCAAGGATATTATACCAGTTGTTTTGTA
AGCAAGAATACATACCGCAGTTTTGTTATCTTTAAAACCAAGGATATTATACCCGGTATTATTGCTTGCCATTTTTTGTTTGGATAAGGTTTTCAAAAGTTTTGTGGCGTTCCATGAACACAGCACAGAAGTAGAACTGTACAAAACTGGGCTGAGCCCATCCATCTGTGAAGCTGCCACGACATGACTAATTTCTTGGA
AGGAATATAACGTCACAGTACCATTCATCTCTTTTTTGCTACAACGTGGCATCGCTGTTATGCGTGGTGGCCCACATTTGGTGTGTCGTTTATTTGGACCGAGTTATCTTACTCGTTCATGGGAAAGGCAAAATTTCTATGGCTGTATGTTTAAGTGAATATATTGTGATATATATAAAAATTTGATTGGGTGTA
>TRINITY_DN113056_c0_g1_i2 from sample A1 / Example unspliced isoform:CGTCGCCATGATCGGTTTCGCTgtaagcagcacaatactgtcagtctgtttagcttgttatttgattagatctaccagtagactgatgaaaatggcggtttgcttgtttgtttgttggtttgttgatgtgttttgcagGCGTCGCTGCTGGGGGAAGCAATAACGGGGAAGGGAATTCTACAGCAGCTAAATTTGGAGAC
GGGAATTCCTATATATGAAGCAGAGCCTCTGCTGCTCTTCTTTATTCTTTTCACGCTGCTGGGAGCCATAGGAGCCTTAGGCGACAGAGGGAAATTTGTGGACGATGATATTCCAGCTGACAGGCCTCTGATAGACCCTGGAAAGGGCTTCAGATCGGCTGTTGGCCTCAGTGATAGCGGTATGGCAGCAATTTCCATTA
GGTTTATTCTTTAATTCGCGTTTGGTGGGTCAATTTGTGTTTATATTGTTGTTGCTGCTTGTTGTTGTTGGTATAGGTTTAATAATTGTCGCAATTTTGAATATAATTGGTGGGATAGATGGATTTCATTTCATTTATTCTGGTTCAATTTTGTCGAGACATTTTCTGGTTTGGATGACTAGCTTACCGTTGCTCGACTA
CCATTCACAATATGTGAGAAAGTTTGTTGAGCTTTTGAATATGTCGCCGAAAAAAATATAATGTAT