sp|Q940B8|KN13A_ARATH ----> Kinesin-like protein KIN-13A
Intron 1 GTAATTGTAC ... CCTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.21 | 75 | 561.3 | 5 |
| A2 | 86.31 | 66 | 416 | 0 |
| A3 | 86.96 | 67 | 447 | 0 |
| A4 | 86.84 | 55 | 363 | 3 |
| A5 | 85.56 | 26 | 154 | 3 |
| A6 | 85.81 | 153 | 925 | 0 |
| A7 | 86.07 | 265 | 1638 | 0 |
| A8 | 84.64 | 375 | 2067 | 0 |
| A9 | 84.65 | 283 | 1561.3 | 0 |
| A10 | 84.39 | 222 | 1200.3 | 0 |
>TRINITY_DN43876_c0_g2_i4 from sample A8 / Example spliced isoformAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAG
CATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGGCTGCACGCTGCTTCAACTTTGTGCATGCTTTCAGGTGGCATGGTTTATTGTTATCCTCAAGTCTGAAACGAGAAAAAAAACTCCTTTAGTTTGGATTTTATTTTCAATTCTCATCTTG
>TRINITY_DN43876_c0_g2_i6 from sample A8 / Example unspliced isoform:CTATATGATCTGCTGGGTGACAGGAAGAAATTATGTATGAGGGAGGATGCCAGACAACAAGTTTGCATTGTTGGTTTGCAAGAATTCGAAGTCTCAGACATACAATGTGTGAAGGAGTATATTGAGAAAGGGAATGGATCCCGGAGCACAGGTTCGACTGGAGCTAATGAAGAGTCATCAAGGTCTCATGCTATCTTGCA
ACTTACAATTAAGAAGCATGGTGAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACC
AAATCCATATTCCATTTCGAGGAAGCAAGCTGACAGAAGTGATTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGT
AGTTTAGCTCTGCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATAATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTGGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAG
CAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACAAATCAAAAGTCCACTTCTGCAGCTATGAATTCTATTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAGAAGGTTT
CCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCCTGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCA
ATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTGAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAG
GTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAGCATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGCGGCATCATGTGCAAGgtaattgtactaccattgatgcttccttaaagagggtctgtcttcgcattctataa
cttacattgcaagtttgtagagtgatgttaaaatcttatattgcttttgccacatggaggtattgactgggcgtccatatctctgaagtccatttgtatatgaaatctcttgctgcaacacaacagattattagagttgatttgtcattcaatattactgcgtatactaagttgtgaaatttggtgtgcttccaaatgtt
attctactgggaatgcaagatgtacttgttcagagaaaggtggaagcctcatttaaggtgcttggattcatgactttacaatgttcccattcaaatttattgatgtgccttgagctttgctctagtgaaaactataacgtcatattatgccctgtaatcttgtagcttttttcacatgtttctgtgtagaaactgcaccc
tactatgataaagggaccaaggattggaatttttatcgtcaatgatagttcgtatgagtggtcatccttaaacagaatgctagcctatattctttttagcaattatatttttcatcgaatatgtttcctttttttgaatatgcaatttcagttttgaataaataacctctgatggcaaaatatttatgggaggttagatt
tagtcctctaggactgaactaaaagtgcaaactctttgtaaaatctttattgggattcacgtattctttttgtacaccttatccatggaaaaaggagatggttttagttgcttgaggtctatgaaacaaattgaatcatacctgaactgcccaaatcgtacatgaagttgagtctgcattaataattgaactgcggtaaa
agtattgaataataatcattacgtctgcacacaggtcatttatattctttccacgaaccatttaggaaaatgtcctttccccttgaactatgaactttattgtaaacccgaattcattaatgtgttagctgacctctttcagGCTGCACGCTGCTTCAACTTTGTGCATGCTTTCAGGTGGCATGGTTTATTGTTATCCT
CAAGTCTGAAACGAGAAAAAAAACTCCTTTAGTTTGGATTTTATTTTCAATTCTCATCTTG
Intron 2 GTATTGACTG ... CCTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.91 | 75 | 192 | 5 |
| A2 | 70.54 | 66 | 158 | 0 |
| A3 | 67 | 67 | 136 | 0 |
| A4 | 65.84 | 55 | 106 | 3 |
| A5 | 68.29 | 26 | 56 | 3 |
| A6 | 75.75 | 153 | 478 | 0 |
| A7 | 73.61 | 265 | 739 | 0 |
| A8 | 74.63 | 375 | 1103 | 0 |
| A9 | 73.05 | 283 | 767 | 0 |
| A10 | 69.04 | 222 | 495 | 0 |
>TRINITY_DN43876_c0_g2_i4 from sample A8 / Example spliced isoformAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAG
CATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGGCTGCACGCTGCTTCAACTTTGTGCATGCTTTCAGGTGGCATGGTTTATTGTTATCCTCAAGTCTGAAACGAGAAAAAAAACTCCTTTAGTTTGGATTTTATTTTCAATTCTCATCTTG
>TRINITY_DN43876_c0_g2_i8 from sample A8 / Example unspliced isoform:CTATATGATCTGCTGGGTGACAGGAAGAAATTATGTATGAGGGAGGATGCCAGACAACAAGTTTGCATTGTTGGTTTGCAAGAATTCGAAGTCTCAGACATACAATGTGTGAAGGAGTATATTGAGAAAGGGAATGGATCCCGGAGCACAGGTTCGACTGGAGCTAATGAAGAGTCATCAAGGTCTCATGCTATCTTGCA
ACTTACAATTAAGAAGCATGGTGAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACC
AAATCCATATTCCATTTCGAGGAAGCAAGCTGACAGAAGTGATTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGT
AGTTTAGCTCTGCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATAATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTGGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAG
CAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACAAATCAAAAGTCCACTTCTGCAGCTATGAATTCTATTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAGAAGGTTT
CCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCCGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCCTGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCA
ATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTGAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAG
GTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAGCATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGgtattgactgggcgtccatatctctgaagtccatttgtatatgaaatctcttgctg
caacacaacagattattagagttgatttgtcattcaatattactgcgtatactaagttgtgaaatttggtgtgcttccaaatgttattctactgggaatgcaagatgtacttgttcagagaaaggtggaagcctcatttaaggtgcttggattcatgactttacaatgttcccattcaaatttattgatgtgccttgagc
tttgctctagtgaaaactataacgtcatattatgccctgtaatcttgtagcttttttcacatgtttctgtgtagaaactgcaccctactatgataaagggaccaaggattggaatttttatcgtcaatgatagttcgtatgagtggtcatccttaaacagaatgctagcctatattctttttagcaattatatttttcat
cgaatatgtttcctttttttgaatatgcaatttcagttttgaataaataacctctgatggcaaaatatttatgggaggttagatttagtcctctaggactgaactaaaagtgcaaactctttgtaaaatctttattgggattcacgtattctttttgtacaccttatccatggaaaaaggagatggttttagttgcttga
ggtctatgaaacaaattgaatcatacctgaactgcccaaatcgtacatgaagttgagtctgcattaataattgaactgcggtaaaagtattgaataataatcattacgtctgcacacaggtcatttatattctttccacgaaccatttaggaaaatgtcctttccccttgaactatgaactttattgtaaacccgaattc
attaatgtgttagctgacctctttcagGCTGCACGCTGCTTCAACTTTGTGCATGCTTTCAGGTGGCATGGTTTATTGTTATCCTCAAGTCTGAAACGAGAAAAAAAACTCCTTTAGTTTGGATTTTATTTTCAATTCTCATCTTG
Intron 3 GTCTGTTTTT ... TTTACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.88 | 556 | 146 | 130 |
| A2 | 19.46 | 476 | 141 | 89 |
| A3 | 19.66 | 521 | 160 | 95 |
| A4 | 17.28 | 450 | 115 | 73 |
| A5 | 21.86 | 227 | 89 | 38 |
| A6 | 21.58 | 376 | 126 | 81 |
| A7 | 19.18 | 1129 | 310 | 226 |
| A8 | 16.89 | 893 | 180 | 183 |
| A9 | 19.67 | 966 | 309 | 164 |
| A10 | 20.02 | 917 | 292 | 167 |
>TRINITY_DN132076_c0_g1_i2 from sample A1 / Example spliced isoformGAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACCAAATCCATATTCCATTTCGAGG
AAGCAAGCTGACAGAAGTGCTTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGTAGTTTAGCTCTGCCTCCTAAGG
ATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATAATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTCGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCA
AGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACAAATCAAAAGTCCACTTCTGCAGCTATGAATTCTGTTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGG
CAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCCTGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTG
AGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAG
CATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGGTATTGACTGGGCGTCCATATCTCTGAAGTCCATTTGTATATGAAATCTCTTGCTGCAACACAACAGATTATTAGAGTTGATTTGTCATTCAATATTACTGCGTATACTAAGTTGTGAAATTTGGTGTG
CTTCCAAATGTTATTCTACTGGGAATGCAAGATGTACCTTTTCAGAGAAAGGTGGAAGCCTCATTTAAGGTGCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTGATGTGCCTTGAGCTTTGCTCTAGTGAAAACTATAACGTCATATTATGCCCTGTAATCTTGTAGCTTTTTTCACATGTTTCTGTGTA
GAAACTGCACCCTACTATGATAAAGGGACCAAGGATTGGAATTTTTATCGTCAATGATAGTTCGTATGAGTGGTCATCCTTAAACAGAATGCTAGCCTATATTCTTTTTAGCAATTATATTTTTCATCGAAA
>TRINITY_DN132076_c0_g1_i1 from sample A1 / Example unspliced isoform:GAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACCAAATCCATATTCCATTTCGAGG
AAGCAAGCTGACAGAAGTGCTTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGgtctgttttttttttctctttagggatgttccatgattgcaatgtcactgctatgacctacaaccagaacattt
ttagtttagctcttctcatttataatgtgctgaaacaattcgatgttaaaaatggtggttttactgcagGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGTAGTTTAGCTCTGCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATA
ATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTCGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACA
AATCAAAAGTCCACTTCTGCAGCTATGAATTCTGTTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCC
TGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTGAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATG
TGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAGCATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGCG
GCATCATGTGCAAGGTAATTGTACTACCATTGATGCTTCCTTAAAGAGGGTCTGTCTTCGCATTCTATAACTTACATTGCAAGTTTGTAGAGTGATGTTAAAATCTTATATTGCTTTTGCCACATGGAGGTATTGACTGGGCGTCCATATCTCTGAAGTCCATTTGTATATGAAATCTCTTGCTGCAACACAACAGATTA
TTAGAGTTGATTTGTCATTCAATATTACTGCGTATACTAAGTTGTGAAATTTGGTGTGCTTCCAAATGTTATTCTACTGGGAATGCAAGATGTACTTGTTCAGAGAAAGGTGGAAGCCTCATTTAAGGTGCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTGATGTGCCTTGAGCTTTGCTCTAGTGAAA
ACTATAACGTCATATTATGCCCTGTAATCTTGTAGCTTTTTTCACATGTTTCTGTGTAGAAACTGCACCCTACTATGATAAAGGGACCAAGGATTGGAATTTTTATCGTCAATGATAGTTCGTATGAGTGGTCATCCTTAAACAGAATGCTAGCCTATATTCTTTTTAGCAATTATATTTTTCATCGAAA
Intron 4 GTCTGCTTTT ... TTTACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.58 | 556 | 80 | 80 |
| A2 | 12.42 | 476 | 83 | 52 |
| A3 | 12.18 | 519 | 98 | 46 |
| A4 | 10.58 | 448 | 67 | 39 |
| A5 | 14.72 | 226 | 60 | 18 |
| A6 | 12.86 | 376 | 67 | 44 |
| A7 | 12.15 | 1124 | 172 | 139 |
| A8 | 10.99 | 887 | 122 | 97 |
| A9 | 12.5 | 966 | 187 | 89 |
| A10 | 13.68 | 909 | 197 | 91 |
>TRINITY_DN43876_c0_g2_i1 from sample A8 / Example spliced isoformCTATATGATCTGCTGGGTGACAGGAAGAAATTATGTATGAGGGAGGATGCCAGACAACAAGTTTGCATTGTTGGTTTGCAAGAATTCGAAGTCTCAGACATACAATGTGTGAAGGAGTATATTGAGAAAGGTAATGCATCCCGGAGCACAGGTTCGACTGGAGCTAATGAAGAGTCATTGAGTTCTCATGCTATCTTGCA
ACTTACGATTAAGAAGCATGGCGAAGGGAAAGAGTCAAAAAGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGATGGAAGTGAACGTGGGGCAGACAATGATCGCCAAATGAGGATGGAGGGAGTAGAAATCAACAAGACCCTTACGGCTCTAAAAGATTGTATACGGGCCTTGGATAATGACCAAATCCATA
TTCCATTTCGAGGAAGCAAGCTGACAGAAGTGATTCGTGATTCCTTTGTAGGGAACTCACAAATGGTTATGATATCATGCACTTCCCCTAATTTGGGTTCTTTTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGATTTCAAAGAGCGGTAATTTGAAAAAGGATCAAAGTGCAAGAAATTTAGCG
CTTCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGTAAGGAGATTTCTGACTATAATCAAACTATAGAAAATACAGATGTTGGTAGAAGTTCTGTGGACAATCCACAATAATACATCAATTTGAAGAAATTGGAAGGCATCCTTCTTTTTTGTTGTTGAGTTACGCCTTTACTAGCAGAGAGGAAA
GTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGCGGGTATTGATGGTCCTGTTACAATTCAAAAGTCATATTCTGCAGTTATGAATTCTTTTGATCCATATGAGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAGAAGGTTTCCCCAACACGT
CGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAAACAGACAAACTAGATATCTAAAGAAGACGGCAAGTCTGAAGCATTTAATGCTGTCAGAAAGCAAAAACGACAATTTAAGGAAGATCTTGCTTCAAATAATGTTGCTCCTAGACCCAAGGAAAGGGTAGAAATTGATTAAGGTAATGATATAAATGCAATACTACATG
TACACAAGTCGATTTATGCTTGAGATATCTTTTTTGTGTGAA
>TRINITY_DN43876_c0_g2_i3 from sample A8 / Example unspliced isoform:CTATATGATCTGCTGGGTGACAGGAAGAAATTATGTATGAGGGAGGATGCCAGACAACAAGTTTGCATTGTTGGTTTGCAAGAATTCGAAGTCTCAGACATACAATGTGTGAAGGAGTATATTGAGAAAGGTAATGCATCCCGGAGCACAGGTTCGACTGGAGCTAATGAAGAGTCATTGAGTTCTCATGCTATCTTGCA
ACTTACGATTAAGAAGCATGGCGAAGGGAAAGAGTCAAAAAGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGATGGAAGTGAACGTGGGGCAGACAATGATCGCCAAATGAGGATGGAGGGAGTAGAAATCAACAAGACCCTTACGGCTCTAAAAGATTGTATACGGGCCTTGGATAATGACCAAATCCATA
TTCCATTTCGAGGAAGCAAGCTGACAGAAGTGATTCGTGATTCCTTTGTAGGGAACTCACAAATGGTTATGATATCATGCACTTCCCCTAATTTGGGTTCTTTTGAGCATACACTTAATACGTTGAGATATGCAGATAGgtctgcttttttcctctttagggatgttccatgattgcaatgtcactgttttgaccaacaa
gcaaaccattttcagtttatctcttctcatttataatgtgctgaaacaattcgatgtggaaaatggtggttttactacagGGTTAAAGGGATTTCAAAGAGCGGTAATTTGAAAAAGGATCAAAGTGCAAGAAATTTAGCGCTTCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGTAAGGAGATT
TCTGACTATAATCAAACTATAGAAAATACAGATGTTGGTAGAAGTTCTGTGGACAATCCACAATAATACATCAATTTGAAGAAATTGGAAGGCATCCTTCTTTTTTGTTGTTGAGTTACGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGCGGGTATTGATGGT
CCTGTTACAATTCAAAAGTCATATTCTGCAGTTATGAATTCTTTTGATCCATATGAGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAAAGAAGAAAAACCAGGAAAAACAGACAAACTAGATATCTAAAGAAG
ACGGCAAGTCTGAAGCATTTAATGCTGTCAGAAAGCAAAAACGACAATTTAAGGAAGATCTTGCTTCAAATAATGTTGCTCCTAGACCCAAGGAAAGGGTAGAAATTGATTAAGGTAATGATATAAATGCAATACTACATGTACACAAGTCGATTTATGCTTGAGATATCTTTTTTGTGTGAA
Intron 5 GTAATTGTAC ... CCACATGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.55 | 192.3 | 561.2 | 406.1 |
| A2 | 70.31 | 158 | 416 | 332.2 |
| A3 | 75.34 | 136.2 | 447 | 384.9 |
| A4 | 74.07 | 105.5 | 362.8 | 240 |
| A5 | 70.83 | 56 | 154 | 118 |
| A6 | 70.67 | 478.9 | 924.9 | 1383.2 |
| A7 | 71.19 | 739.5 | 1638.2 | 2015.8 |
| A8 | 68.58 | 1102.4 | 2067.2 | 2746 |
| A9 | 69.77 | 766.7 | 1561.2 | 1977.1 |
| A10 | 71.32 | 494.7 | 1200.2 | 1260.7 |
>TRINITY_DN132076_c0_g1_i2 from sample A1 / Example spliced isoformGAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACCAAATCCATATTCCATTTCGAGG
AAGCAAGCTGACAGAAGTGCTTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGTAGTTTAGCTCTGCCTCCTAAGG
ATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATAATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTCGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCA
AGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACAAATCAAAAGTCCACTTCTGCAGCTATGAATTCTGTTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGG
CAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCCTGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTG
AGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAG
CATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGGTATTGACTGGGCGTCCATATCTCTGAAGTCCATTTGTATATGAAATCTCTTGCTGCAACACAACAGATTATTAGAGTTGATTTGTCATTCAATATTACTGCGTATACTAAGTTGTGAAATTTGGTGTG
CTTCCAAATGTTATTCTACTGGGAATGCAAGATGTACCTTTTCAGAGAAAGGTGGAAGCCTCATTTAAGGTGCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTGATGTGCCTTGAGCTTTGCTCTAGTGAAAACTATAACGTCATATTATGCCCTGTAATCTTGTAGCTTTTTTCACATGTTTCTGTGTA
GAAACTGCACCCTACTATGATAAAGGGACCAAGGATTGGAATTTTTATCGTCAATGATAGTTCGTATGAGTGGTCATCCTTAAACAGAATGCTAGCCTATATTCTTTTTAGCAATTATATTTTTCATCGAAA
>TRINITY_DN132076_c0_g1_i1 from sample A1 / Example unspliced isoform:GAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTGGATAATGACCAAATCCATATTCCATTTCGAGG
AAGCAAGCTGACAGAAGTGCTTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGTCTGTTTTTTTTTTCTCTTTAGGGATGTTCCATGATTGCAATGTCACTGCTATGACCTACAACCAGAACATTT
TTAGTTTAGCTCTTCTCATTTATAATGTGCTGAAACAATTCGATGTTAAAAATGGTGGTTTTACTGCAGGGTTAAAGGGCTTTCAAAGAGCAGTAATTTGAAAAAGGATCAAAGTGCAAGTAGTTTAGCTCTGCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATA
ATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTCGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTTGTCGTCGAGTTATGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACA
AATCAAAAGTCCACTTCTGCAGCTATGAATTCTGTTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAGAGAAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCC
TGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAGGCTTTGATAGCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTGAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATG
TGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAGCATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGCG
GCATCATGTGCAAGgtaattgtactaccattgatgcttccttaaagagggtctgtcttcgcattctataacttacattgcaagtttgtagagtgatgttaaaatcttatattgcttttgccacatggagGTATTGACTGGGCGTCCATATCTCTGAAGTCCATTTGTATATGAAATCTCTTGCTGCAACACAACAGATTA
TTAGAGTTGATTTGTCATTCAATATTACTGCGTATACTAAGTTGTGAAATTTGGTGTGCTTCCAAATGTTATTCTACTGGGAATGCAAGATGTACTTGTTCAGAGAAAGGTGGAAGCCTCATTTAAGGTGCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTGATGTGCCTTGAGCTTTGCTCTAGTGAAA
ACTATAACGTCATATTATGCCCTGTAATCTTGTAGCTTTTTTCACATGTTTCTGTGTAGAAACTGCACCCTACTATGATAAAGGGACCAAGGATTGGAATTTTTATCGTCAATGATAGTTCGTATGAGTGGTCATCCTTAAACAGAATGCTAGCCTATATTCTTTTTAGCAATTATATTTTTCATCGAAA
Intron 6 GCAAGTTTGA ... ATCTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.13 | 417 | 2 | 140 |
| A2 | 25.58 | 355 | 0 | 122 |
| A3 | 27.21 | 444 | 1 | 166 |
| A4 | 25.61 | 337 | 0 | 116 |
| A5 | 27.31 | 165 | 0 | 62 |
| A6 | 28.08 | 146 | 0 | 57 |
| A7 | 28.03 | 624 | 0 | 243 |
| A8 | 29.93 | 302 | 0 | 129 |
| A9 | 28.96 | 547 | 0 | 223 |
| A10 | 29.55 | 584 | 0 | 245 |
>TRINITY_DN121038_c3_g3_i1 from sample A3 / Example spliced isoformATGAAGTTTATCGAGTTACAGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATATGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTACGAGCCTCAGAGGATATACTTAAGCTGATGAACAGATCTTTCTATCGAGAACAAGGGTTTCGCTTGTGGCTTAGT
TTCTTTGAGATATATGGGGGCAAACTATATGATCTGCTGGGTGACAGGAAGAAATTGTGTATGAGGGAGGATGCCAGACAACAAGTTTGCATTGTTGGTTTGCAAGAATTCGAAGTCTCAGACATACAATGTGTGAAGGAGTATATTGAGAAAGGGAATGGATCCCGGAGCACAGGTTCGACTGGAGCTAATGAAGAGTC
ATCAAGGTCTCATGCTATCTTGCAACTTACAATTAAGAAGCATGGTGAAGGGAAAGAGTCAAAGGGTGGTAGAATAGTTGGGAAGCTATCATTTATTGACCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACGAGGATGGAGGGAGCAGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGT
GTATACGGGCCTTGGATAATGACCAAATCCATATTCCATTTCGAGGAAGCAAGCTGACAGAAGTGCTTCGTGATTCCTTTGTAGGGAACTCACGGACGGTTATGATATCATGTGTTTCCCCTAATTCGGGTTCTTGTGAGCATACACTTAATACGTTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAAT
TTGAAAAAGGATCAAAGTGCAAGTAGTTTAGCTCTGCCTCCTAAGGATTCGTCTTCATCCCCGCCTTTGCCTCTGGAGGATGCAAGGGAGTTTTCTGACTATAATCAAACTGTAGCAAATGCAGACGTTGGTAGAAGATCTGTGGACAATCCACAATATTACAATCAATCTGAAGAACTTGGAAGGCATCCTTCTAGTTT
GTCGTCGAGTTATGCCTTTACTAGCAGAGAGGAAAGTGGGTTTTCAAGTATGGTTGAAAACAATAGAGTTAATATGAGAGAGGGTATTGCTGGTCCTGTTACAAATCAAAAGTCCACTTCTGCAGCTATGAATTCTATTGATCCATATGTGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAAGTAAGCAGAG
AAGAAAAACCAGAAAAACAGACAAACTGGATATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCCGTCAGAAAGCAACAACAGCAATTTAAGGAAGATCCTGCTTCAAATAATGCTGCTCCTAGAACCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAGGCTTTGATA
GCAGCCCACAGGAAGGAAATTGAGGATACAATGGATCTAGTGCGTGAGGAAATGAAAATTTTAACGGAAGTTGAGCAACCAGGCAGCCTCATAGATGATTATGTGTCCAAACTAAGTATTGTGCTATCACGCAAAGCAGCTAGTCTGGTGAGCTTGCAGGCCCGACTTGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGA
GATACTAAGCCTGAAAAAGAGCATGTCCTTGAGATGATCTATCAAGCATTTGGAAACCATTCTTTCAGCTCTGATTTTTCTAAGGTGGTAAATTTTGCAGGTGGCATCATGTGCAAGGTATTGACTGGGCGTCCATATCTCTGAAGTCCATTTGTATATGAAATCTCTTGCTGCAACACAACAGATTATTAGAGTTGATT
TGTCATTCAATATTACTGCATATACTAAGTTGTGAAATTTGGTGTGCTTCCAAATGTTATTCTACTGGGAATGCAAGATGTACCTTTTCAGAGAAAGGTGGAAGCCTCATTTAAGGTGCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTGATGTGCCTTGAGCTTTGCTCTAGTGAAAACTATAACGTCA
TATTATGCCCTGTAATCTTGTAGCTTTTTTCACATGTTTCTGTGTAGAAACTGCACCCTACTATGATAAAGGGACCAAGGATTGGAATTTTTATCGTCAATGATAGTTCGTATGAGTGGTCATCCTTAAACAGAATGCTAGCCTATATTCTTTTTAGCAATTATATTTTTCATCGAATATGTTTCCTTTTTTTGAATATG
CAATTTCAGTTTTGAATAAATAACCTCTGATGGCAAAATATTTATGGGAGGTTAGATTTAGTCCTCTAGGACTGAACTAAAAGTGCAAACTCTTTGTAAAATCTTTATTGGGATTCACGTATTCTTTTTGTACAACTTATCCATGG
>TRINITY_DN121038_c3_g3_i4 from sample A3 / Example unspliced isoform:CTTTGCATATGGTCAAACAGgcaagtttgagtcagtattatgtaggtatttgtattggtagaagtcataggtcatcatgatagtcactctgataatattcagtgttcactatagaaattgtcagtttgtgatttggtgtttcttgacttcttgttgaacctatgattaatcattatttttactctggcaggcactaatct
actgggtttttatctttccagGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTACGAGCCTCAGAGGATATACTTAAGCTGATGAACAGATCTTTCTATCGAGAACAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTGCTGGGTGACAGGAAGTATGTACATGACCAT
GCATATATACAAGTTGACTTCTAGTATAATGATATTTAGAAATATAGGCTCCATTCTTGTGGTCTCTACTGGGTCCTGTGGCTTGTGTATACAACCACTTGTTAGTCATTTCTTGTGACCTGTTATGCTGTGTTAGTTGGTTTTGATTGATTATTTACTTCAGCTGTTTTCCTGGGCCCTTAAATCTCACAAATCTCTCA
TACATTTGCTTCTAAAAATCTTATTTTAAGGAGACCTATTTATACTAGGATGGCCACAAAGATGGCAATAGATTCAACTGAGCTTCACAATATTTCAATGAAGTTTATATGTGAGGGATGTTCTTTTGAATGGGATGATGGGGTGAGCATCTAAATGATTCAGCTAAGTCTTTAAACACAACAATGGCATTCAGTCTGAT
ATTTCCTGTATAATAGAAGTTATTAGATATAATAGTACTTGGTTAATATATGGAGATCAGTATTGGATGTATATTTAATTTTAAGAGTTGCTATCGATGCTTGGCTCTCTCTGGTTCCTTAGCTCCCAACCCCAACAGCTGGAAAGAACAATAACCCCC