NA ----> NA
Intron 1 GTTTGGGTCA ... GGTTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 2 |
| A2 | 33.33 | 4 | 0 | 4 |
| A3 | 60 | 1 | 2 | 1 |
| A4 | 45.83 | 3.8 | 0 | 6 |
| A5 | 20 | 2 | 0 | 1 |
| A6 | 48.15 | 7 | 3 | 10 |
| A7 | 35.68 | 25.3 | 7 | 21 |
| A8 | 42.86 | 4 | 3 | 3 |
| A9 | 35.48 | 10 | 4 | 7 |
| A10 | 52 | 6 | 3 | 10 |
>TRINITY_DN40993_c2_g1_i3 from sample A6 / Example spliced isoformTTTCGGTGCAACCATACTTTTGACCAGTGGAACACTTTCGGTAGAAAACTTTGGCTCTTTACCAGTGGATTCCATCAGTCTCTCGCAATGGACACTTGCCCTGCTGGGATTCCGTCATTGAATCAGAAGAAGCTGAGACGGCTTTCCCATGTCTTTTGCAGGGTCCTGGAATTGCCCTTCAAGTCAGAGGTCCCTGTGGC
AGTAGAGGAGAACGGGGAGTGTTTCAGGTTTATTGTGAGTACTGATGAGGCATTGGCCTTTCGGGAGGTGAGGGCTGAAAGTATAGAAATTTCTCCCGGGATGATTAAGGTTGTGATTCGGGAGGCTAACAGCAGGCCCAGGTTTTTGATGGATGAATTGGAATCAGATATTTGGCGCTTTAGGCTGCCTTCGTCCACTC
TGCCTGCGCTGTCAACTGCAGTTTACAGTGATGGGGATCTTGTTGTGACGGTGCCCAAATATGTTGCTACTTCCGATTTCAGAGGATGAGGAAGAAGAAACAAGGGCACCTTGGTCGAGGCCAGAGAGGGAGATTTCGGTGAAAGGAATGATGTATCTGGGAAAATGAATCGCTATCAAGAAAACCCAAAAGAAGAGGAC
TCTGGTAGGGCTAATCTTGAAAGCCAGGTCCTGTATGAAGACTGGCCAGACCTAGTTCTTTTACGAGATATGGGAACGCAGTTGGATTCCTCGTGTCTGTTCAAAGATAAGTTCATATAATCCATGCTATGATTCCTTTTGCGATTGTAGAAGATTTCACAAGCTTTTATTGTAATAAAGTTGTATTTTAATGTGTTTCA
CTAGGTTTTGGCCACTTACATGTACAGAATGCCTGAAATCATCTTATCAGAGTAGACTCTTCTTGGATTATTTGATCAATTTTTTGTGGTTATATAAGATTTCCTATTCCCCGGGGCTAACCAGGTGCAAGATCAATTAGTATTAAAACTTTTTTTTGCTTTCTTACTCTTCTCTTTTCTTCTTTTTACTTTGGAAGTGC
TTCAAGGAACATGGTCATATTGAGCATAGAGTGGATTTCCTTCAGCTTAGTTGCCAAGGCCAAGGGGAATATATTCTGCCAACATCGGCCTCATCCCTTTGGGATAGACTATAACGAGAATGAAGCCCCTGTTAATGGCTTAATAATCTGGCGATAGACTATAACGAGAATGAAGCCCCTGTGAATGGCTTAATAATCTG
GCGATGTCACTAGTGAACCAATGCATGGTTCGCAAGTGTTGAATCAACAATTTCAAACATGTTTTTAGATCTAGGTTTTTTTGTTCTATATTTATATTGATAGGTGTTTATATTTTACAATTTGGGGTGGACAATGAAGGGTTATTTTCCTAGATTACATGAAGATGAGACAAGTGCACTGTCAAGATTTGTTTTATAAG
GATCGCTCCAAATTCAAAATAAACAATTATATATATATATTAATTTACATGTGATAACTAGTAGCCGACGTATAAATAACAAACAGTTTG
>TRINITY_DN40993_c2_g1_i1 from sample A6 / Example unspliced isoform:CATTTCGGTGCAACCACGCTTTTGACCAGTGGAACACTTTCGGTAGAAAACTTTGGCTCTTTACCAGTGGATTCCATCAGgtttgggtcatccaaattttgttgttgttgttaatttcattattaaccattgcgaaacaaattaaaaagaatatggcaaatttccattgaaagttacctggaatcctcatcgcacatccc
atgcatgcaccattaattgaattgtaagttaactggacttgctggaagtatcattttcttgtgaatttatacatccatgaaaattttgatgaacaagctacaatccacacttgctctcctgcccacaagcaaattgccaggaaattgcccatcagctcagccactctatttattgtaggccattgccctgagagcttgaa
agtttacaggcgccttctgattgcaagttttattctgttatttgggttttttagTCTCTCGCAATGGACACTTGCCCTGCTGGGATTCCGTCATTGAATCAGAAGAAGCTGAGACGGCTTTCCCATGTCTTTTGCAGGGTCCTGGAATTGCCCTTCAAGTCAGAGGCCCCTGTGGCAGTAGAGGAGAACGGGGAGTGTTT
CAGGTTTATTGTGAGTACTGATGAGGCATTGGCCTTTCGGGAGGTGAGGGCTGAAAGTATAGAAATTTCTCCCGGGATGATTAAGGTTGTGATTCGGGAGGCTAACAGCAGGCCCAGGTTTTTGATGGATGAATTGGAATCAGATATTTGGCGCTTTAGGCTGCCTTCGTCCACTCTGCCTGCGCTGTCAACTGCAGTTT
ACAGTGATGGGGATCTTGTTGTGACGGTGCCCAAATATGTTGCTACTTCCGATTTCAGAGGATGAGGAAGAAGAAACAAGGGCACCTTGGTCGAGGCCAGAGAGGGAGATTTCGGTGAAAGGAATGATGTATCTGGGAAAATGAATCGCTATCAAGAAAACCCAAAAGAAGAGGACTCTGGTAGGGCTAATCTTGAAAGC
CAGGTCCTGTATGAAGACTGGCCAGACCTAGTTCTTTTACGAGATATGGGAACGCAGTTGGATTCCTCGTGTCTGTTCAAAGATAAGTTCATATAATCCATGCTATGATTCCTTTTGCGATTGTAGAAGATTTCACAAGCTTTTATTGTAATAAAGTTGTATTTTAATGTGTTTCACTAGGTTTTGGCCACTTACATGTA
CAGAATGCCTGAAATCATCTTATCAGAGTAGACTCTTCTTGGATTATTTGATCAATTTTTTGTGGTTATATAAGATTTCCTATTCCCCGGGGCTAACCAGGTGCAAGATCAATTAGTATTAAAACTTTTTTTTGCTTTCTTACTCTTCTCTTTTCTTCTTTTTACTTTGGAAGTGCTTCAAGGAACATGGTCATATTGAG
CATAGAGTGGATTTCCTTCAGCTTAGTTGCCAAGGCCAAGGGGAATATATTCTGCCAACATCGGCCTCATCCCTTTGGGATAGACTATAACGAGAATGAAGCCCCTGTTAATGGCTTAATAATCTGGCGATAGACTATAACGAGAATGAAGCCCCTGTGAATGGCTTAATAATCTGGCGATGTCACTAGTGAACCAATGC
ATGGTTCGCAAGTGTTGAATCAACAATTTCAAACATGTTTTTAGATCTAGGTTTTTTTGTTCTATATTTATATTGATAGGTGTTTATATTTTACAATTTGGGGTGGACAATGAAGGGTTATTTTCCTAGATTACATGAAGATGAGACAAGTGCACTGTCAAGATTTGTTTTATAAGGATCGCTCCAAATTCAAAATAAAC
AATTATATATATATATTAATTTACATGTGATAACTAGTAGCCGACGTATAAATAACAAACAGTTTG
Intron 2 GTTTGGGTCA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.6 | 8 | 1 | 3.7 |
| A2 | 66.67 | 5 | 0 | 10 |
| A3 | 12.5 | 7 | 2 | 1 |
| A4 | 64.29 | 5 | 0 | 9 |
| A5 | 50 | 3 | 0 | 3 |
| A6 | 46.55 | 38.7 | 3 | 33.7 |
| A7 | 55.11 | 37 | 7 | 45.4 |
| A8 | 37.99 | 26.1 | 3 | 16 |
| A9 | 47.27 | 29 | 4 | 26 |
| A10 | 52.17 | 22 | 3 | 24 |
>TRINITY_DN40993_c2_g1_i4 from sample A6 / Example spliced isoformCATTTCGGTGCAACCACGCTTTTGACCAGTGGAACACTTTCGGTAGAAAACTTTGGCTCTTTACCAGTGGATTCCATCAGGGTCCTGGAATTGCCCTTCAAGTCAGAGGCCCCTGTGGCAGTAGAGGAGAACGGGGAGTGTTTCAGGTTTATTGTGAGTACTGATGAGGCATTGGCCTTTCGGGAGGTGAGGGCTGAAAG
TATAGAAATTTCTCCCGGGATGATTAAGGTTGTGATTCGGGAGGCTAACAGCAGGCCCAGGTTTTTGATGGATGAATTGGAATCAGATATTTGGCGCTTTAGGCTGCCTTCGTCCACTCTGCCTGCGCTGTCAACTGCAGTTTACAGTGATGGGGATCTTGTTGTGACGGTGCCCAAATATGTTGCTACTTCCGATTTCA
GAGGATGAGGAAGAAGAAACAAGGGCACCTTGGTCGAGGCCAGAGAGGGAGATTTCGGTGAAAGGAATGATGTATCTGGGAAAATGAATCGCTATCAAGAAAACCCAAAAGAAGAGGACTCTGGTAGGGCTAATCTTGAAAGCCAGGTCCTGTATGAAGACTGGCCAGACCTAGTTCTTTTACGAGATATGGGAACGCAG
TTGGATTCCTCGTGTCTGTTCAAAGATAAGTTCATATAATCCATGCTATGATTCCTTTTGCGATTGTAGAAGATTTCACAAGCTTTTATTGTAATAAAGTTGTATTTTAATGTGTTTCACTAGGTTTTGGCCACTTACATGTACAGAATGCCTGAAATCATCTTATCAGAGTAGACTCTTCTTGGATTATTTGATCAATT
TTTTGTGGTTATATAAGATTTCCTATTCCCCGGGGCTAACCAGGTGCAAGATCAATTAGTATTAAAACTTTTTTTTGCTTTCTTACTCTTCTCTTTTCTTCTTTTTACTTTGGAAGTGCTTCAAGGAACATGGTCATATTGAGCATAGAGTGGATTTCCTTCAGCTTAGTTGCCAAGGCCAAGGGGAATATATTCTGCCA
ACATCGGCCTCATCCCTTTGGGATAGACTATAACGAGAATGAAGCCCCTGTTAATGGCTTAATAATCTGGCGATAGACTATAACGAGAATGAAGCCCCTGTGAATGGCTTAATAATCTGGCGATGTCACTAGTGAACCAATGCATGGTTCGCAAGTGTTGAATCAACAATTTCAAACATGTTTTTAGATCTAGGTTTTTT
TGTTCTATATTTATATTGATAGGTGTTTATATTTTACAATTTGGGGTGGACAATGAAGGGTTATTTTCCTAGATTACATGAAGATGAGACAAGTGCACTGTCAAGATTTGTTTTATAAGGATCGCTCCAAATTCAAAATAAACAATTATATATATATATTAATTTACATGTGATAACTAGTAGCCGACGTATAAATAACA
AACAGTTTG
>TRINITY_DN40993_c2_g1_i1 from sample A6 / Example unspliced isoform:CATTTCGGTGCAACCACGCTTTTGACCAGTGGAACACTTTCGGTAGAAAACTTTGGCTCTTTACCAGTGGATTCCATCAGgtttgggtcatccaaattttgttgttgttgttaatttcattattaaccattgcgaaacaaattaaaaagaatatggcaaatttccattgaaagttacctggaatcctcatcgcacatccc
atgcatgcaccattaattgaattgtaagttaactggacttgctggaagtatcattttcttgtgaatttatacatccatgaaaattttgatgaacaagctacaatccacacttgctctcctgcccacaagcaaattgccaggaaattgcccatcagctcagccactctatttattgtaggccattgccctgagagcttgaa
agtttacaggcgccttctgattgcaagttttattctgttatttgggttttttagtctctcgcaatggacacttgccctgctgggattccgtcattgaatcagaagaagctgagacggctttcccatgtcttttgcagGGTCCTGGAATTGCCCTTCAAGTCAGAGGCCCCTGTGGCAGTAGAGGAGAACGGGGAGTGTTT
CAGGTTTATTGTGAGTACTGATGAGGCATTGGCCTTTCGGGAGGTGAGGGCTGAAAGTATAGAAATTTCTCCCGGGATGATTAAGGTTGTGATTCGGGAGGCTAACAGCAGGCCCAGGTTTTTGATGGATGAATTGGAATCAGATATTTGGCGCTTTAGGCTGCCTTCGTCCACTCTGCCTGCGCTGTCAACTGCAGTTT
ACAGTGATGGGGATCTTGTTGTGACGGTGCCCAAATATGTTGCTACTTCCGATTTCAGAGGATGAGGAAGAAGAAACAAGGGCACCTTGGTCGAGGCCAGAGAGGGAGATTTCGGTGAAAGGAATGATGTATCTGGGAAAATGAATCGCTATCAAGAAAACCCAAAAGAAGAGGACTCTGGTAGGGCTAATCTTGAAAGC
CAGGTCCTGTATGAAGACTGGCCAGACCTAGTTCTTTTACGAGATATGGGAACGCAGTTGGATTCCTCGTGTCTGTTCAAAGATAAGTTCATATAATCCATGCTATGATTCCTTTTGCGATTGTAGAAGATTTCACAAGCTTTTATTGTAATAAAGTTGTATTTTAATGTGTTTCACTAGGTTTTGGCCACTTACATGTA
CAGAATGCCTGAAATCATCTTATCAGAGTAGACTCTTCTTGGATTATTTGATCAATTTTTTGTGGTTATATAAGATTTCCTATTCCCCGGGGCTAACCAGGTGCAAGATCAATTAGTATTAAAACTTTTTTTTGCTTTCTTACTCTTCTCTTTTCTTCTTTTTACTTTGGAAGTGCTTCAAGGAACATGGTCATATTGAG
CATAGAGTGGATTTCCTTCAGCTTAGTTGCCAAGGCCAAGGGGAATATATTCTGCCAACATCGGCCTCATCCCTTTGGGATAGACTATAACGAGAATGAAGCCCCTGTTAATGGCTTAATAATCTGGCGATAGACTATAACGAGAATGAAGCCCCTGTGAATGGCTTAATAATCTGGCGATGTCACTAGTGAACCAATGC
ATGGTTCGCAAGTGTTGAATCAACAATTTCAAACATGTTTTTAGATCTAGGTTTTTTTGTTCTATATTTATATTGATAGGTGTTTATATTTTACAATTTGGGGTGGACAATGAAGGGTTATTTTCCTAGATTACATGAAGATGAGACAAGTGCACTGTCAAGATTTGTTTTATAAGGATCGCTCCAAATTCAAAATAAAC
AATTATATATATATATTAATTTACATGTGATAACTAGTAGCCGACGTATAAATAACAAACAGTTTG