sp|Q8RY25|NU98A_ARATH ----> Nuclear pore complex protein NUP98A
Intron 1 GTAAAAAGTC ... GGAGATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.41 | 8 | 53 | 69 |
| A2 | 83.13 | 7 | 37 | 32 |
| A3 | 89.47 | 5 | 42 | 43 |
| A4 | 75 | 5 | 18 | 12 |
| A5 | 91.49 | 2 | 22 | 21 |
| A6 | 87.3 | 16 | 101 | 119 |
| A7 | 82.69 | 9 | 36 | 50 |
| A8 | 86.96 | 9 | 55 | 65 |
| A9 | 98.15 | 1 | 35 | 71 |
| A10 | 93.83 | 5 | 66 | 86 |
>TRINITY_DN43442_c0_g1_i17 from sample A7 / Example spliced isoformTTCTTCTATGCCACAGTATAAGGACAAAAGTCACGAAGAATTAAGATGGGAGGATTATCAATTGGGTGACAAAGGGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCG
TACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCAGCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAGCATTTGGGAATGACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGC
GTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCT
TTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTT
GGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGAGGCCTAATCCCAGCAAGACAA
CAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGT
>TRINITY_DN43442_c0_g1_i2 from sample A7 / Example unspliced isoform:GGAAGAAAAAGCATTTTCTTACCTTTTCACCACTTTTACTAACATGCCACTTTTCGCCTTTCAAACAAAGTTTCCTCCTCCTTACCGTTTTCGTTTCTGAGAGGCGCTCGGTGCCAATCCAACCTCTTGGTGCCTGCATTTTCGCCCATTTCACTCCGGATCCCATCAAAGTTTACATCGGATTTTTGCAATAATTTAAG
TATTGAATACTATCAGATTCCACAATGGTTGAATCAAGTAACCGAGCTCAGCCTGGAACTCCAACGCTTGGTAAGTCCAGATTTAGACGACGATCCTTTGGAGGACAGCATGGAGGTAATAGAGTGACACCGAACTCAAGTACAAATAAGACTATGAATGCTGTTGGTGGAACATCTGCGTTTGGACAAAGGCCTGCATT
TGGAGTATTTGGATCACCAAATATTTCTCAATCAAGTCCTTTTGGATGTACTTTTGGTCAGACGCAACCAATTTTTGGAACTCAACCTTTTGACACATCCAGTCAACCTGTCTCCACTGCAGCTAGCACATCTTCATTTAGATCCACTTCAACACCAGTATTTGGTAGCACAAGCTCTACTCAGGATGCAGGAAGTGTGC
CTGTCTGTGGTGTTTCTAGTAGTTCAGTGTTTGGGGCTTCCAGTACTCCAGCTGTTGGGGATTCAACAACTCCTTTTTTTGGTTTTATAAGCACTATTGCTTTTGGTCAACTAGCTCCATCATTTGGTGCAGCACCTATTCCAGCATTCGGGAGCAACACAACATTTGGAAGCACTCCATCTCCTTTTGATAAGAATTCA
GCCTTTGGAGCTCAGTCTACACATGCAACATTTGAGGGCCCAGGATTTGGACAAACATCCTTTGGGGGACAGGGTGGAGGTAGTAGAGTAACACCGTACACAAGTACAAACGAGCCAGAGACTGTCCTTGGTCAGGCACCTGGGAAACTTATTTCCATTTCTTCTATGCCACAGTATAAGGACAAAAGTCACGAAGAATT
AAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCTGCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACAC
CAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCGTACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCAGCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAGCATTTGGGAAT
GACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAA
GTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTG
GGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGgtaaaaagtcatgaagaattaagatgggaggattatgctgtgggagataaagGAGGCCTAATCCCAGCAAGACAACAACCTGC
AGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGTCAAACACCACCTGCCTTTGGAACATCTACATTCGGATTATACGGATTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAA
CTAGCACACCTGCATTTCTATCCACTTTGACACCAGCGTTTGGTGCCACAACCTCTGCATTGGGTGCAACAAGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCA
TTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGGTGAGCATATTTTCTTCAAGCCCTTCTTTGTTTTGGGTTATAAATTTTGAATGCTCTTGTTAATGATTGAATTCCATATTTGTGATTCAGTTTCTTGTTTACTTCTGATCTAATA
CAGTAGAGTTAACATTAGATAGGACATAGATTCTCCTGTCATCTTCTTTCATATGTTAGTTCTCACAATTACTTCGGTGAGAGACATTCAAACAAAGTGGGCCTTGGGCATCCTGGCATCTTGTTAATGATTGAATTTCATATTTGTGATTCAGTTTCTTG
Intron 2 GTGAACAGAT ... TACTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.87 | 27 | 16 | 7 |
| A2 | 18.57 | 19.8 | 6 | 3 |
| A3 | 20.88 | 36 | 7 | 12 |
| A4 | 25 | 9 | 4 | 2 |
| A5 | 5.88 | 16 | 1 | 1 |
| A6 | 12.28 | 25 | 5 | 2 |
| A7 | 13.85 | 28 | 7 | 2 |
| A8 | 14.29 | 21 | 3 | 4 |
| A9 | 15.15 | 28 | 7 | 3 |
| A10 | 25 | 9 | 4 | 2 |
>TRINITY_DN120106_c1_g1_i4 from sample A1 / Example spliced isoformTGTGTCCGCATTTGCTGTTCATGGTGACTCAGCTTTGAGTTAATTACAAGATGGTTATCTAGAAACTAGGTCTCTGAATTAATGAAGTTAGCGTTGTACATTTGCTTAACTATCTTTTTTCATATGCAGGAACATCTGCGTTTGGACAAAGGCCTGCATTTGGAGTATTTGGATCACCAAATATTTCTCAATCAAGTCCT
TTTGGATGTACTTTTGGTCAGACGCAACCAATTTTTGGAACTCAACCTTTTGACACATCCAGTCAACCTGTCTCCACTGCAGCTAGCACATCTTCATTTAGATCCACTTCAACACCAGTATTTGGTAGCACAAGCTCTACTCAGGATGCAGGAAGTGTGCCTGTCTGTGGTGTTTCTAGTAGTTCAGTGTTTGGGGCTTC
CAGTACTCCAGCTGTTGGGGATTCAACAACTCCTTTTTTTGGTTTTATAAGCACTATTGCTTTTGGTCAACTAGCTCCATCATTTGGTGCAGCACCTATTCCAGCATTCGGGAGCAACACAACATTTGGAAGCACTCCATCTCCTTTTGATAAGAATTCAGCCTTTGGAGCTCAGTCTACACATGCAACATTTGAGGGCC
CAGGATTTGGACAAACATCCTTTGGGGGACAGGGTGGAGGTAGTAGAGTAACACCGTACACAAGTACAAACGAGCCAGAGACTGTCCTTGGTCAGGCACCTGGGAAACTTATTTCCATTTCTTCTATGCCACAGTATAAGGACAAAAGTCACGAAGAATTAAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCT
GCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTGTATTTGGATCTACCATGACACAAGCATTTGGTACCACAACCTCTGCATTGGGTGCAACAAG
TGGGCCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCGTACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCAGCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAGCATTTGGGAATGACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGA
GTTCGGCTTTTGGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCA
GCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGA
CACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTT
CTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGGAGGCCTAATCCCAGCAAGACAACAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGTCAAACACCACCTGCCTTTGGAACATCTACATTCGGATTATACGGA
TTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGCACACCTGCATTTGTATCCACTTTGACACCAGTGTTTGGTGCCACAACCTCTGCATTGGGTGCAACAAGTGTGCCTGCCTTTGGTGC
TTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGGTGAGC
ATATTTTCTTCAAGCCCTTCTTTGTTTTGGGTTATAAATTTTGAATGCTCTTGTTAATGATTGAATTCCATATTTGTGATTCAGTTTCTTGTTTACTTCTGATCTAATACAGTAGAGTTAACATTAGATAGGACATAGATTCTCCTGTCATCTTCTTTCATATGTTAGTTCTCACAATTACTTCGGTGAGAGACATTCAA
ACAAAGTGGGCCTTGGGCATCC
>TRINITY_DN120106_c1_g1_i7 from sample A1 / Example unspliced isoform:AGATAATTGGTTTGCAATCTCTCATTTATATATACATATATATAAAATATAAAAGCTCAATACACTATAATCTTTATGGCGAAAAAAGCAAAATACACCATAATCTTTATGCCGAAAAAAGCAAAAGGAAATGTTGATGAGATGTTTACTATTTATAAATCAGAAATGCAAAACGTCTCAAACACACACAAAGACGGAAG
AAAAAGCATTTTCTTACCTTTTCACCACTTTTACTAACATGCCACTTTTCGCCTTTCAAACAAAGTTTCCTCCTCCTTACCGTTTTCGTTTCTGAGAGGCGCTCGGTGCCAATCCAACCTCTTGGTGCCTGCATTTTCGCCCATTTCACTCCGGATCCCATCAAAGTTTACATCGGATTTTTGCAATAATTTAAGTATTG
AATACTATCAGATTCCACAATGGTTGAATCAAGTAACCGAGCTCAGCCTGGAACTCCAACGCTTGGTAAGTCCAGATTTAGACGACGATCCTTTGGAGGACAGCATGGAGGTAATAGAGTGACACCGAACTCAAGTACAAATAAGACTATGAATGCTGTTGGTGGAACATCTGCGTTTGGACAAAGGCCTGCATTTGGAG
TATTTGGATCACCAAATATTTCTCAATCAAGTCCTTTTGGATGTACTTTTGGTCAGACGCAACCAATTTTTGGAACTCAACCTTTTGACACATCCAGTCAACCTGTCTCCACTGCAGCTAGCACATCTTCATTTAGATCCACTTCAACACCAGTATTTGGTAGCACAAGCTCTACTCAGGATGCAGGAAGTGTGCCTGTC
TGTGGTGTTTCTAGTAGTTCAGTGTTTGGGGCTTCCAGTACTCCAGCTGTTGGGGATTCAACAACTCCTTTTTTTGGTTTTATAAGCACTATTGCTTTTGGTCAACTAGCTCCATCATTTGGTGCAGCACCTATTCCAGCATTCGGGAGCAACACAACATTTGGAAGCACTCCATCTCCTTTTGATAAGAATTCAGCCTT
TGgtgaacagattttctacaaactcccttgtgttttgggctataaattttgaatgctcttgttaatgctagaatagctcatatttctaattcaatttgttgtttacttttgatctaatatagtagatctacattagacagggaattgctgttcctctgtcaggttgttcctatgttagttcttaccatttccatcgacta
cttttctaatctcctgtacagattatcacattttgttcctttctactctacagGAGCTCAGTCTACACATGCAACATTTGAGGGCCCAGGATTTGGACAAACATCCTTTGGGGGACAGGGTGGAGGTAGTAGAGTAACACCGTACACAAGTACAAACGAGCCAGAGACTGTCCTTGGTCAGGCACCTGGGAAACTTATTT
CCATTTCTTCTATGCCACAGTATAAGGACAAAAGTCACGAAGAATTAAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCTGCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCT
GCTTCTGGTGCAACTAGCACACCTGTATTTGGATCTACCATGACACAAGCATTTGGTACCACAACCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCGTACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCA
GCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAGCATTTGGGAATGACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAA
CTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACT
CCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACA
GCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGGAGGCCTAATCCCAGCAAGACAACAACCTGCAGGGG
AAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGTCAAACACCACCTGCCTTTGGAACATCTACATTCGGATTATACGGATTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGC
ACACCTGCATTTGTATCCACTTTGACACCAGTGTTTGGTGCCACAACCTCTGCATTGGGTGCAACAAGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGG
CACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGGTGAGCATATTTTCTTCAAGCCCTTCTTTGTTTTGGGTTATAAATTTTGAATGCTCTTGTTAATGATTGAATTCCATATTTGTGATTCAGTTTCTTGTTTACTTCTGATCTAATACAGTA
GAGTTAACATTAGATAGGACATAGATTCTCCTGTCATCTTCTTTCATATGTTAGTTCTCACAATTACTTCGGTGAGAGACATTCAAACAAAGTGGGCCTTGGGCATCC
Intron 3 GTATGTTAAT ... ACTTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.15 | 61 | 1 | 7 |
| A2 | 7.76 | 41 | 3 | 4 |
| A3 | 3.44 | 56 | 2 | 2 |
| A4 | 2.7 | 45 | 0.5 | 2 |
| A5 | 13.92 | 34 | 6 | 5 |
| A6 | 0.72 | 103 | 0.5 | 1 |
| A7 | 1.54 | 96 | 1 | 2 |
| A8 | 1.86 | 66 | 1.5 | 1 |
| A9 | 0.28 | 90 | 0.5 | 0 |
| A10 | 2.86 | 85 | 2 | 3 |
>TRINITY_DN107543_c0_g1_i3 from sample A2 / Example spliced isoformATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCA
GCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGA
GGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCT
GCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTAC
TTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCAT
TTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAA
CTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGC
CTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTC
TTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGA
TTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAG
CAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTG
GGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTG
ACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGC
TGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATG
CCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCC
AAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAA
GCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTA
ATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTG
ATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGC
>TRINITY_DN107543_c0_g1_i2 from sample A2 / Example unspliced isoform:GTTTATTTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTGGACCTTGTGTTTTAATATTTGATTGGTATGAACTGCAGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGgtatgttaatgatcattatta
ctaactatagatattccaattctattagttggatttatctttcactatcaatggaatttgtattaggttacaagatttgacatgggatgtgtatcttttctgcacttcattagCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCGTGAGAACTACAATTATTTCCTT
GCTTCTCTTTCTTATGAATATGAGATTCATGTCATTAGTGCCGTTTGCTCTTCTAACAGAGCACCTCCTTCCTCTTGTTGCAGCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATA
TGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCA
TCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGG
TCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCT
TATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAAT
GCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCA
TATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTAT
AGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAA
GTATTTTTGATATGAAATAATATTTTATTGTGGGC
Intron 4 GTGAGCAGAT ... TCATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.46 | 24.6 | 3 | 4 |
| A2 | 15.38 | 11 | 1 | 3 |
| A3 | 16 | 21 | 2 | 6 |
| A4 | 35.06 | 15.8 | 8 | 9 |
| A5 | 22.86 | 27 | 3 | 13 |
| A6 | 6.48 | 28.9 | 0 | 4 |
| A7 | 2.44 | 20 | 0 | 1 |
| A8 | 2.56 | 19 | 0 | 1 |
| A9 | 5.26 | 18 | 0 | 2 |
| A10 | 5.88 | 8 | 0 | 1 |
>TRINITY_DN120106_c1_g1_i13 from sample A1 / Example spliced isoformTGTGTCCGCATTTGCTGTTCATGGTGACTCAGCTTTGAGTTAATTACAAGATGGTTATCTAGAAACTAGGTCTCTGAATTAATGAAGTTAGCGTTGTACATTTGCTTAACTATCTTTTTTCATATGCAGGAACATCTGCGTTTGGACAAAGGCCTGCATTTGGAGTATTTGGATCACCAAATATTTCTCAATCAAGTCCT
TTTGGATGTACTTTTGGTCAGACGCAACCAATTTTTGGAACTCAACCTTTTGACACATCCAGTCAACCTGTCTCCACTGCAGCTAGCACATCTTCATTTAGATCCACTTCAACACCAGTATTTGGTAGCACAAGCTCTACTCAGGATGCAGGAAGTGTGCCTGTCTGTGGTGTTTCTAGTAGTTCAGTGTTTGGGGCTTC
CAGTACTCCAGCTGTTGGGGATTCAACAACTCCTTTTTTTGGTTTTATAAGCACTATTGCTTTTGGTCAACTAGCTCCATCATTTGGTGCAGCACCTATTCCAGCATTCGGGAGCAACACAACATTTGGAAGCACTCCATCTCCTTTTGATAAGAATTCAGCCTTTGGTGAACAGATTTTCTACAAACTCCCTTGTGTTT
TGGGCTATAAATTTTGAATGCTCTTGTTAATGCTAGAATAGCTCATATTTCTAATTCAATTTGTTGTTTACTTTTGATCTAATATAGTAGATCTACATTAGACAGGGAATTGCTGTTCCTCTGTCAGGTTGTTCCTATGTTAGTTCTTACCATTTCCATCGACTACTTTTCTAATCTCCTGTACAGATTATCACATTTTG
TTCCTTTCTACTCTACAGGAGCTCAGTCTACACATGCAACATTTGAGGGCCCAGGATTTGGACAAACATCCTTTGGGGGACAGGGTGGAGGTAGTAGAGTAACACCGTACACAAGTACAAACGAGCCAGAGACTGTCCTTGGTCAGGCACCTGGGAAACTTATTTCCATTTCTTCTATGCCACAGTATAAGGACAAAAGT
CACGAAGAATTAAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCTGCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTGTATTTGGATC
TACCATGACACAAGCATTTGGTACCACAACCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCGTACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCAGCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAG
CATTTGGGAATGACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAA
CCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGG
TCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTA
CGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGGAGGCCTAATCCCAGCAAGACAACAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCC
TTTGGTCAAACACCACCTGCCTTTGGAACATCTACATTCGGATTATACGGATTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGCACACCTGCATTTGTATCCACTTTGACACCAGTGTT
TGGTGCCACAACCTCTGCATTGGGTGCAACAAGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAA
TGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGGTGAGCATATTTTCTTCAAGCCCTTCTTTGTTTTGGGTTATAAATTTTGAATGCTCTTGTTAATGATTGAATTCCATATTTGTGATTCAGTTTCTTGTTTACTTCTGATCTAATACAGTAGAGTTAACATTAGATAGGACATAGATTCTCCTGTC
ATCTTCTTTCATATGTTAGTTCTCACAATTACTTCGGTGAGAGACATTCAAACAAAGTGGGCCTTGGGCATCC
>TRINITY_DN120106_c1_g1_i2 from sample A1 / Example unspliced isoform:TGGTACAGCATCTACTTCAGCATTTGGGAATGACCCACCATTCAGAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGgtgagcagattttctctaagttcctcttcatttgggttaaaaatttgaatgttcttgttactgctctaatatttcattttcttgtttactcctgatctaatatgatatatatacatt
agctatgacttagatactctttgtcatgttgttccttcattttatttatgttatttctgaaacctcttgtacagattctatttatctgcctctagaactagtttcgattggattaatgcctgatttctatttcctgtacatttcagttgtgctgataagatagatttaatttcctttcagaacagagttaccattgcttt
tcagagaactgtcatttttaaacttgcagtgcagtctttccttgagtattatttttcatatgcagGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTC
AACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGCCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTG
GGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAG
TACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGGAGGCCTAATCCCAGCAAGACAACAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATT
CCTTTGGTCAAACACCACCTGCCTTTGGAACATCTACATTCGGATTATACGGATTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGCACACCTGCATTTGTATCCACTTTGACACCAGTG
TTTGGTGCCACAACCTCTGCATTGGGTGCAACAAGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAA
AATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGGTGAGCATATTTTCTTCAAGCCCTTCTTTGTTTTGGGTTATAAATTTTGAATGCTCTTGTTAATGATTGAATTCCATATTTGTGATTCAGTTTCTTGTTTACTTCTGATCTAATACAGTAGAGTTAACATTAGATAGGACATAGATTCTCCTG
TCATCTTCTTTCATATGTTAGTTCTCACAATTACTTCGGTGAGAGACATTCAAACAAAGTGGGCCTTGGGCATCC
Intron 5 GTTAAGTGAC ... TGCAATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.56 | 147 | 30 | 37 |
| A2 | 17.07 | 119 | 26 | 23 |
| A3 | 20.81 | 118 | 27 | 35 |
| A4 | 20.43 | 111 | 31 | 26 |
| A5 | 15.03 | 65 | 18 | 5 |
| A6 | 19.26 | 306 | 94 | 52 |
| A7 | 19.7 | 316 | 102 | 53 |
| A8 | 19.44 | 232 | 67 | 45 |
| A9 | 19.94 | 291 | 79 | 66 |
| A10 | 16.85 | 222 | 57 | 33 |
>TRINITY_DN44278_c2_g3_i4 from sample A8 / Example spliced isoformGGGCAGAGCACCTTTGGGCAACCGTGAGAACTACAATTATTTCCTTGCTTCTCTTTCTTATGAATATGAGATTCATGTCATTAGTGCCGTTTGCTCTTCTAACAGAGCACCTCCTTCCTCTTGTTGCAGCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGC
CTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGC
GATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATT
TGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTG
GGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACT
GATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAA
AAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATC
TCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATG
TAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAG
>TRINITY_DN44278_c2_g3_i3 from sample A8 / Example unspliced isoform:GGGCAGAGCACCTTTGGGCAACCGTGAGAACTACAATTATTTCCTTGCTTCTCTTTCTTATGAATATGAGATTCATGTCATTAGTGCCGTTTGCTCTTCTAACAGAGCACCTCCTTCCTCTTGTTGCAGCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGC
CTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGgttaagtgacagcca
ttaatggagcatttcttgtttcacacacctgcaggatagttcgaaatgcataaggtttctagtttacactgtgtgctggtattcctaatttggttcttttgctgcaatgtagGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTT
TCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTT
CGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTA
CTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAA
GCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAA
TTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTA
ACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTA
TTGTGGGTTGTTAACTAG
Intron 6 GTAAAAAGTC ... TAAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 8 | 30 | 10 |
| A2 | 68.18 | 7 | 26 | 4 |
| A3 | 77.27 | 5 | 26 | 8 |
| A4 | 74.36 | 5 | 16 | 13 |
| A5 | 83.33 | 2 | 14 | 6 |
| A6 | 70.91 | 16 | 47 | 31 |
| A7 | 69.49 | 9 | 23 | 18 |
| A8 | 68.42 | 9 | 28 | 11 |
| A9 | 95.12 | 1 | 14 | 25 |
| A10 | 86.49 | 5 | 35 | 29 |
>TRINITY_DN43442_c0_g1_i17 from sample A7 / Example spliced isoformTTCTTCTATGCCACAGTATAAGGACAAAAGTCACGAAGAATTAAGATGGGAGGATTATCAATTGGGTGACAAAGGGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAACATTTTGGGTTTCCCG
TACTCCAACTGTTGGGGCTTCGAGTACTCCTCCATTTAGTTTTGGAAGCACCGTCACTTTGGGTCAGCCGGTTGCGGCATTTGGTGCAGCATCTACTCCAGCATTTGGGAATGACACACCATTCGAAAGCACTTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGC
GTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCT
TTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTT
GGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGAGGCCTAATCCCAGCAAGACAA
CAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGT
>TRINITY_DN43442_c0_g1_i5 from sample A7 / Example unspliced isoform:GCAACTAGCACACCTTTATTTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTAC
AGCATTTGGTGCAACATCTACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAG
AGGGTGCTAGTTATGGCGAGGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGgtaaaaagtcatgaagaattaagatgggaggattatgatgtgggagataaaggtactagtcaattttttcattgttagtgttattgtgatctgcaaaaatatgtctgttttggcattggtcttgttgttcattta
tgcagtaattactattagactgatgaagttgtaaatttcagGAGGCCTAATCCCAGCAAGACAACAACCTGCAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGTGAAAGACTACCTGCCTTTGGAACATCTACATTCAGATTATATGGATTACCAAGTCTTGATCAATCAAGTCCTTTTAGAAGTA
CTTTTGGTCAGACAAAACCAGTGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGCACACCTGCATTTCTATCCACTTTGACACCAGCGTTTGGTGCCACAACCTCTGCATTCGGTGCAAGTGCAACAAGTGTGCCTTCCTTTGGTGCTTTTAATTCTCCAGTGTTTGGGATTTCCAGT
ACTCCAGCCATTGGAACTTCAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAACAAAATGTTTGGATGCACTTCATCTCATTTTGGTCAAATTTTGCATTCCAGTGAGCATATTTTCTTCAAGC
Intron 7 GTGAGATCTC ... TGTATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.21 | 107 | 1 | 40 |
| A2 | 26.09 | 102 | 0 | 36 |
| A3 | 18.64 | 96 | 1 | 22 |
| A4 | 30.68 | 61 | 0 | 27 |
| A5 | 35.09 | 37 | 0 | 20 |
| A6 | 25.57 | 227 | 0 | 78 |
| A7 | 23.02 | 217.4 | 1 | 65 |
| A8 | 22.22 | 245 | 2 | 70 |
| A9 | 26.82 | 199.2 | 1 | 73 |
| A10 | 19.1 | 161 | 0 | 38 |
>TRINITY_DN43442_c0_g1_i15 from sample A7 / Example spliced isoformCCGGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCA
AATCGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTT
AGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATT
CGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTG
GATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACT
CCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACC
TGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAA
CACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCT
CCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTC
ATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTT
TTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCA
GCTTTTGGGCAGAGCACCTTTGGGCAACCGTGAGAACTACAATTATTTCCTTGCTTCTCTTTCTTATGAATATGAGATTCATGTCATTAGTGCCGTTTGCTCTTCTAACAGAGCACCTCCTTCCTCTTGTTGCAGCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAG
CAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTT
TTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATC
ATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATA
GAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGG
GAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATT
TGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTC
AACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTT
GCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAG
>TRINITY_DN43442_c0_g1_i18 from sample A7 / Example unspliced isoform:GCCATACCTATTAATGATAATGgtgagatctcaggattcactttcaaaatgtagggtgtggtgcccattagtcttgataataattggactgtaatttgtatgcttcttaattggaccgacaatgggcttgtaatttggatggtggttaagcttagcctactattcttgaggtgtagttcactgttatttacttggttttg
attaacttatcaccttataaggaccaaggtgcaatgacaatgttgatactgtttttgatgtgtccactctctgaaatattttgttctgtatgtcagGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACA
AACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTC
AGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGG
ATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAA
TGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCT
GGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAAT
ATTTTATTGTGGGTTGTTAACTAG
Intron 8 GTATGTATTG ... TTATGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.64 | 96 | 0 | 22 |
| A2 | 21.21 | 78 | 4 | 21 |
| A3 | 20.81 | 137 | 8 | 36 |
| A4 | 16.46 | 66 | 3 | 13 |
| A5 | 13.98 | 80 | 0 | 13 |
| A6 | 9.2 | 79 | 0 | 8 |
| A7 | 10.62 | 101 | 0 | 12 |
| A8 | 7.41 | 25 | 0 | 2 |
| A9 | 12.5 | 84 | 0 | 12 |
| A10 | 12.15 | 94 | 0 | 13 |
>TRINITY_DN107543_c0_g1_i3 from sample A2 / Example spliced isoformATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCA
GCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGA
GGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCT
GCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTAC
TTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCAT
TTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAA
CTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGC
CTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTC
TTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGA
TTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAG
CAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTG
GGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTG
ACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGC
TGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATG
CCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCC
AAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAA
GCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTA
ATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTG
ATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGC
>TRINITY_DN107543_c0_g1_i1 from sample A2 / Example unspliced isoform:GGCGTCTTCTGGAGAATTTAAGGTACGGCACTTGACGAACTTACTCTGATTTAATTAAATGTATTGTCTAGTGTTTAATTGCACTGATTTGATTCAAGATCATGTGGGTATGGCTTTTTAGGGCCATCGGATAAACATTCCAGTTTTATTGACAAGCACTGGGTTTTGTGTATCAGGATCGAATAATATCGGATTTCACC
ATGTTTGGATCGAGTAACCgtatgtattgcatcgcttttaatctgttcaagggcttatttgttgagttagggttattttaggtttaattttgatgatagatttagaagagtagtggggtttgatatcagtagatttagggcaaacgggcagggttttttattggttttttagtgagggggaaactgttctgtctttctat
tattgaaaattcatggattggggaattttttatttgggattcaatttaatgcatgtttttcattatttttatgatttgcaattggcgtttttcattgctttgatgatttgcaatcatttctgcgttggtgtgattgattttaatcgttatgggcagCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCA
TTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTC
GACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTC
AGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTT
GGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAAC
TACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATC
CCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACC
TCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGC
ATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGAC
AGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCA
GCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCC
TGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAA
GGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGAT
ACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCA
TTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACA
TGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGA
GAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCT
TCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAAT
AATATTTTATTGTGGGC
Intron 9 GTAGCGGAAA ... TGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.86 | 168 | 44 | 50 |
| A2 | 21.92 | 130 | 44 | 29 |
| A3 | 21.79 | 140 | 36 | 42 |
| A4 | 20.2 | 81 | 23 | 18 |
| A5 | 23.14 | 88 | 33 | 20 |
| A6 | 23.23 | 114 | 33 | 36 |
| A7 | 22.22 | 196 | 42 | 70 |
| A8 | 22.82 | 93 | 19 | 36 |
| A9 | 24.19 | 163 | 33 | 71 |
| A10 | 23.44 | 129 | 34 | 45 |
>TRINITY_DN103137_c0_g1_i11 from sample A5 / Example spliced isoformCTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAAAGCGCCCATTCTACGTCTCAAATCGCAGCAA
AGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCC
TTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGC
CATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCA
ACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGG
GAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTA
TTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTT
GGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTT
TGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCA
CACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCT
TTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGG
TTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGC
CTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATT
CAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAA
TAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACA
CAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAA
AAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCG
TGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTG
TATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTG
GGTTGTTAACTAGTTATGAGTTGTAAATTCAAATTGTTTTTTGTTCTTTGATATGGATGGTATGTTGCAAATTTTGGTAGGCAGTAGACATGTTTAAGTTCGCTACGGATTGCC
>TRINITY_DN103137_c0_g1_i8 from sample A5 / Example unspliced isoform:CTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAAAGCGCCCATTCTACGTCTCAAATCGCAGCAA
AGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCC
TTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGC
CATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCA
ACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGG
GAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTA
TTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGgtagcggaaaaatattttattattagtattattatcatctgcaagaatatggttgttttagcatggtcttgctcttgatttatgcactaattactaatagattgttgaagttgtgtttt
tcagGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAA
TAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAA
CTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTT
GGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACC
AGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAA
CACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGT
AGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAA
TGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATA
ATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTG
GTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGAC
AGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTC
TCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTC
GTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAGTTATGAGTTGTAAATTCAAATTGTTTTTTGTTCTTTGATATGGATGGTATGTTGCAAATTTTGG
TAGGCAGTAGACATGTTTAAGTTCGCTACGGATTGCC
Intron 10 GTGAGAACTA ... CTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.58 | 66.6 | 9.1 | 18 |
| A2 | 22.39 | 48.8 | 4.6 | 14 |
| A3 | 30.52 | 73.4 | 6.3 | 32 |
| A4 | 24.64 | 46 | 1.3 | 15 |
| A5 | 25.48 | 35.5 | 3 | 12 |
| A6 | 18.06 | 109.6 | 2.1 | 24 |
| A7 | 24.18 | 123.4 | 6.3 | 39 |
| A8 | 25.37 | 89.3 | 2.9 | 30 |
| A9 | 24.09 | 126.9 | 5 | 40 |
| A10 | 22.75 | 109.1 | 3.5 | 32 |
>TRINITY_DN107543_c0_g1_i3 from sample A2 / Example spliced isoformATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCA
GCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGA
GGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCT
GCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTAC
TTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCAT
TTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAA
CTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGC
CTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTC
TTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGA
TTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAG
CAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTG
GGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTG
ACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGC
TGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATG
CCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCC
AAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAA
GCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTA
ATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTG
ATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGC
>TRINITY_DN107543_c0_g1_i2 from sample A2 / Example unspliced isoform:GTTTATTTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTGGACCTTGTGTTTTAATATTTGATTGGTATGAACTGCAGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGGTATGTTAATGATCATTATTA
CTAACTATAGATATTCCAATTCTATTAGTTGGATTTATCTTTCACTATCAATGGAATTTGTATTAGGTTACAAGATTTGACATGGGATGTGTATCTTTTCTGCACTTCATTAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCgtgagaactacaattatttcctt
gcttctctttcttatgaatatgagattcatgtcattagtgccgtttgctcttctaacagagcacctccttcctcttgttgcagCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATA
TGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCA
TCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGG
TCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCT
TATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAAT
GCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCA
TATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTAT
AGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAA
GTATTTTTGATATGAAATAATATTTTATTGTGGGC
Intron 11 GTACGGCACT ... TGTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 124 | 0 | 0 |
| A2 | 3.19 | 91 | 2 | 3 |
| A3 | 4.76 | 160 | 0 | 8 |
| A4 | 0 | 78 | 0 | 0 |
| A5 | 0 | 87 | 0 | 0 |
| A6 | 0 | 86 | 0 | 0 |
| A7 | 0 | 127 | 0 | 0 |
| A8 | 0 | 33 | 0 | 0 |
| A9 | 0 | 106 | 0 | 0 |
| A10 | 0 | 124 | 0 | 0 |
>TRINITY_DN107543_c0_g1_i3 from sample A2 / Example spliced isoformATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCA
GCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGA
GGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCT
GCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTAC
TTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCAT
TTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAA
CTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGC
CTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTC
TTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGA
TTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAG
CAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTG
GGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTG
ACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGC
TGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATG
CCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCC
AAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAA
GCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTA
ATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTG
ATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGC
>TRINITY_DN107543_c0_g1_i1 from sample A2 / Example unspliced isoform:GGCGTCTTCTGGAGAATTTAAGgtacggcacttgacgaacttactctgatttaattaaatgtattgtctagtgtttaattgcactgatttgattcaagatcatgtgggtatggctttttagggccatcggataaacattccagttttattgacaagcactgggttttgtgtatcagGATCGAATAATATCGGATTTCACC
ATGTTTGGATCGAGTAACCGTATGTATTGCATCGCTTTTAATCTGTTCAAGGGCTTATTTGTTGAGTTAGGGTTATTTTAGGTTTAATTTTGATGATAGATTTAGAAGAGTAGTGGGGTTTGATATCAGTAGATTTAGGGCAAACGGGCAGGGTTTTTTATTGGTTTTTTAGTGAGGGGGAAACTGTTCTGTCTTTCTAT
TATTGAAAATTCATGGATTGGGGAATTTTTTATTTGGGATTCAATTTAATGCATGTTTTTCATTATTTTTATGATTTGCAATTGGCGTTTTTCATTGCTTTGATGATTTGCAATCATTTCTGCGTTGGTGTGATTGATTTTAATCGTTATGGGCAGCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCA
TTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTC
GACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTC
AGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTT
GGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAAC
TACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATC
CCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACC
TCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGC
ATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGAC
AGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCA
GCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCC
TGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAA
GGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGAT
ACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCA
TTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACA
TGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGA
GAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCT
TCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAAT
AATATTTTATTGTGGGC