NA ----> NA
Intron 1 GTTATATTGT ... TTTCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.62 | 6 | 12 | 5 |
| A2 | 14.29 | 9 | 2 | 1 |
| A3 | 42.86 | 2 | 2 | 1 |
| A4 | 3.03 | 16 | 0 | 1 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 23.81 | 32 | 12 | 8 |
| A7 | 14.29 | 39 | 4 | 9 |
| A8 | 21.74 | 27 | 4 | 11 |
| A9 | 17.95 | 16 | 1 | 6 |
| A10 | 30 | 14 | 8 | 4 |
>TRINITY_DN29283_c0_g1_i2 from sample A6 / Example spliced isoformGGACGACCCTCTTTTCTTGATGTGGGGGTTTTGTCCTGTGGTGTGTGCAAAAGATAAAGGATAGAAGACGAGCCCTCTCCTTGCCGGGTCTCTTTTCTTGTTTTCAGTTATCATCATTAAAGGCGGTTCAAAAAAAATTCGAGGGCGGCGGCCTCCATAAGGGAGCCAAGCCTCGACAGGGAAACAGTTGTACAAGGTTT
GTCTGCAGAGAGGAGAGTTTCCTCTCAGAAAGAGAGGACGCAGAAGGGCGTAATCTTTTACAAGGGTCTAGCAAAAGGAGACTCCCGTGTAGTTTCAGATTAACTGCTTGTTAAGAAAAGATCGCTACCTCTAAAGAGGACCACTCTCTCTCTATTTGGTAAGCGAAACTGATTTCTTTAATTATGGGTTATTAAATCTT
ATTTCCTGTTCAGGCGTCTTTCTCAGGAAAGAAGAGCACGCAGTTTGCCTCCTCTTGCTCTTTGGGTTGTTCATTCCCCTGAGAAGAAAGAGAAAAGGGAAAATATTTTATTTATGTTTATTAGCATAGCTCAAACCGTGTAGATAGGGCACATACATTCTTTGCTACTATTGCTTTATTACTAGCCTTCCTTCTAGTGG
AGCTATGATGGGCGTAGCCCTAGCTAGTCCTTTGTTCGAAGAGTATTTGAATACAGGGACTCTCCTCTCCAAATATTTATAAGATACCAGATCGTGCTCATATGATAACTCTGTTGGGATTTATACAGCTTGGGTGCAGTTCATAGCCTAGCTTGGTTTGTTAAGGCTGGTTCAAAATAATATTTAAATATTGTTCATAT
AATATGTGTGGATCTAGTCGAAAAGGCGCAGCCCCTTTTTCTGAGGTCCTTTGGTTGTAATTTGTGCATGCACAATCCCAAGCTTGACTTTTGCGAATACTTGAATTAAGTATTTAAATATGTATATAAATTTGTGAGAGTTAAGTCAACGAGGGTATATTCC
>TRINITY_DN29283_c0_g1_i1 from sample A6 / Example unspliced isoform:GGACGACCCTCTTTTCTTGATGTGGGGGTTTTGTCCTGTGGTGTGTGCAAAAGATAAAGGATAGAAGACGAGCCCTCTCCTTGCCGGGTCTCTTTTCTTGTTTTCAGTTATCATCATTAAAGGCGGTTCAAAAAAAATTCGAGGGCGGCGGCCTCCATAAGGGAGCCAAGCCTCGACAGGGAAACAGTTGTACAAGGTTT
GTCTGCAGAGAGGAGAGTTTCCTCTCAGAAAGAGAGGACGCAGAAGGGCGTAATCTTTTACAAGgttatattgtagttttattttacttgctctatagttttgaagagtttcaatctccagtatagttttgaagagtttcaatctccagaagaaagaaagaaccgactgtcctctttatatttctttctatttgatatga
gaactttctttttccgtagccgtatacagattatatttgatagctgagtttttacactctgaaagattactcttagtattttcttctggagctcttaggtcatgagttggccaagaaatatggcgcagctctttgcctaatgtttaaaaaaatttacatcaagagtataacttcttgaggctgttgcagaagtttccttt
cacgactgtcttatgccaagaatttccttcagGGTCTAGCAAAAGGAGACTCCCGTGTAGTTTCAGATTAACTGCTTGTTAAGAAAAGATCGCTACCTCTAAAGAGGACCACTCTCTCTCTATTTGGTAAGCGAAACTGATTTCTTTAATTATGGGTTATTAAATCTTATTTCCTGTTCAGGCGTCTTTCTCAGGAAAGA
AGAGCACGCAGTTTGCCTCCTCTTGCTCTTTGGGTTGTTCATTCCCCTGAGAAGAAAGAGAAAAGGGAAAATATTTTATTTATGTTTATTAGCATAGCTCAAACCGTGTAGATAGGGCACATACATTCTTTGCTACTATTGCTTTATTACTAGCCTTCCTTCTAGTGGAGCTATGATGGGCGTAGCCCTAGCTAGTCCTT
TGTTCGAAGAGTATTTGAATACAGGGACTCTCCTCTCCAAATATTTATAAGATACCAGATCGTGCTCATATGATAACTCTGTTGGGATTTATACAGCTTGGGTGCAGTTCATAGCCTAGCTTGGTTTGTTAAGGCTGGTTCAAAATAATATTTAAATATTGTTCATATAATATGTGTGGATCTAGTCGAAAAGGCGCAGC
CCCTTTTTCTGAGGTCCTTTGGTTGTAATTTGTGCATGCACAATCCCAAGCTTGACTTTTGCGAATACTTGAATTAAGTATTTAAATATGTATATAAATTTGTGAGAGTTAAGTCAACGAGGGTATATTCC
Intron 2 GTTATATTGT ... ATAATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.62 | 6 | 12 | 5 |
| A2 | 18.18 | 9 | 2 | 2 |
| A3 | 50 | 2 | 2 | 2 |
| A4 | 0 | 16 | 0 | 0 |
| A5 | 50 | 1 | 0 | 2 |
| A6 | 24.71 | 32 | 12 | 9 |
| A7 | 16.13 | 39 | 4 | 11 |
| A8 | 20.59 | 27 | 4 | 10 |
| A9 | 15.79 | 16 | 1 | 5 |
| A10 | 33.33 | 14 | 8 | 6 |
>TRINITY_DN29283_c0_g1_i2 from sample A6 / Example spliced isoformGGACGACCCTCTTTTCTTGATGTGGGGGTTTTGTCCTGTGGTGTGTGCAAAAGATAAAGGATAGAAGACGAGCCCTCTCCTTGCCGGGTCTCTTTTCTTGTTTTCAGTTATCATCATTAAAGGCGGTTCAAAAAAAATTCGAGGGCGGCGGCCTCCATAAGGGAGCCAAGCCTCGACAGGGAAACAGTTGTACAAGGTTT
GTCTGCAGAGAGGAGAGTTTCCTCTCAGAAAGAGAGGACGCAGAAGGGCGTAATCTTTTACAAGGGTCTAGCAAAAGGAGACTCCCGTGTAGTTTCAGATTAACTGCTTGTTAAGAAAAGATCGCTACCTCTAAAGAGGACCACTCTCTCTCTATTTGGTAAGCGAAACTGATTTCTTTAATTATGGGTTATTAAATCTT
ATTTCCTGTTCAGGCGTCTTTCTCAGGAAAGAAGAGCACGCAGTTTGCCTCCTCTTGCTCTTTGGGTTGTTCATTCCCCTGAGAAGAAAGAGAAAAGGGAAAATATTTTATTTATGTTTATTAGCATAGCTCAAACCGTGTAGATAGGGCACATACATTCTTTGCTACTATTGCTTTATTACTAGCCTTCCTTCTAGTGG
AGCTATGATGGGCGTAGCCCTAGCTAGTCCTTTGTTCGAAGAGTATTTGAATACAGGGACTCTCCTCTCCAAATATTTATAAGATACCAGATCGTGCTCATATGATAACTCTGTTGGGATTTATACAGCTTGGGTGCAGTTCATAGCCTAGCTTGGTTTGTTAAGGCTGGTTCAAAATAATATTTAAATATTGTTCATAT
AATATGTGTGGATCTAGTCGAAAAGGCGCAGCCCCTTTTTCTGAGGTCCTTTGGTTGTAATTTGTGCATGCACAATCCCAAGCTTGACTTTTGCGAATACTTGAATTAAGTATTTAAATATGTATATAAATTTGTGAGAGTTAAGTCAACGAGGGTATATTCC
>TRINITY_DN29283_c0_g1_i3 from sample A6 / Example unspliced isoform:GGACGACCCTCTTTTCTTGATGTGGGGGTTTTGTCCTGTGGTGTGTGCAAAAGATAAAGGATAGAAGACGAGCCCTCTCCTTGCCGGGTCTCTTTTCTTGTTTTCAGTTATCATCATTAAAGGCGGTTCAAAAAAAATTCGAGGGCGGCGGCCTCCATAAGGGAGCCAAGCCTCGACAGGGAAACAGTTGTACAAGGTTT
GTCTGCAGAGAGGAGAGTTTCCTCTCAGAAAGAGAGGACGCAGAAGGGCGTAATCTTTTACAAGgttatattgtagttttattttacttgctctatagttttgaagagtttcaatctccagtatagttttgaagagtttcaatctccagaagaaagaaagaaccgactgtcctctttatatttctttctatttgatatga
gaactttctttttccgtagccgtatacagattatatttgatagctgagtttttacactctgaaagattactcttagtattttcttctggagctcttaggtcatgagttggccaagaaatatggcgcagctctttgcctaatgtttaaaaaaatttacatcaagagtataacttcttgaggctgttgcagaagtttccttt
cacgactgtcttatgccaagaatttccttcaggaaggagccgtcttttccagttttcatagttaatgtttacagttgttgtacactatataagatgattgaatttcctgattatctatttataattacagGGTCTAGCAAAAGGAGACTCCCGTGTAGTTTCAGATTAACTGCTTGTTAAGAAAAGATCGCTACCTCTAA
AGAGGACCACTCTCTCTCTATTTGGTAAGCGAAACTGATTTCTTTAATTATGGGTTATTAAATCTTATTTCCTGTTCAGGCGTCTTTCTCAGGAAAGAAGAGCACGCAGTTTGCCTCCTCTTGCTCTTTGGGTTGTTCATTCCCCTGAGAAGAAAGAGAAAAGGGAAAATATTTTATTTATGTTTATTAGCATAGCTCAA
ACCGTGTAGATAGGGCACATACATTCTTTGCTACTATTGCTTTATTACTAGCCTTCCTTCTAGTGGAGCTATGATGGGCGTAGCCCTAGCTAGTCCTTTGTTCGAAGAGTATTTGAATACAGGGACTCTCCTCTCCAAATATTTATAAGATACCAGATCGTGCTCATATGATAACTCTGTTGGGATTTATACAGCTTGGG
TGCAGTTCATAGCCTAGCTTGGTTTGTTAAGGCTGGTTCAAAATAATATTTAAATATTGTTCATATAATATGTGTGGATCTAGTCGAAAAGGCGCAGCCCCTTTTTCTGAGGTCCTTTGGTTGTAATTTGTGCATGCACAATCCCAAGCTTGACTTTTGCGAATACTTGAATTAAGTATTTAAATATGTATATAAATTTG
TGAGAGTTAAGTCAACGAGGGTATATTCC