NA ----> NA
Intron 1 GTACCTCATA ... TGCATTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.36 | 14 | 8 | 18.5 |
| A2 | 58.82 | 7 | 10 | 13 |
| A3 | 17.65 | 14 | 3 | 16.5 |
| A4 | 0 | 2 | 0 | 11.5 |
| A5 | 50 | 4 | 4 | 4.5 |
| A6 | 36.36 | 42 | 24 | 65.5 |
| A7 | 30.14 | 51 | 22 | 67.5 |
| A8 | 32.95 | 59 | 29 | 68.5 |
| A9 | 29.69 | 45 | 19 | 61 |
| A10 | 29.63 | 38 | 16 | 63 |
>TRINITY_DN114140_c0_g1_i7 from sample A1 / Example spliced isoformTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGATGAGGGTGCCCTGCATTTAC
ATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGTGTTTTGGAGACTGTCCAAGG
TCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGGAGTGAGCTTGGGCCTTTTTG
TTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTT
GCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGG
TGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATT
CCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAA
ACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGG
ATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTCCC
>TRINITY_DN114140_c0_g1_i2 from sample A1 / Example unspliced isoform:TTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGATGAGGGTGCCCTGCATTTAC
ATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGTGTTTTGGAGACTGTCCAAGG
TCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGGAGTGAGCTTGGGCCTTTTTG
TTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTT
GCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGgtacctcatataatgtttgaattattagcactaggagcggtacttaaattcatcatttcataattgtttcc
aaacccatgtgctaagtatatttgattggctctctattttacagattgacttcttttataatgctgaatctgatctcttcattgcattccagTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATT
GGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAA
ACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCT
TCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTT
GTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTCCC
Intron 2 GTACCCAGGT ... ATTTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.52 | 62 | 16 | 18 |
| A2 | 28.93 | 43 | 23 | 12 |
| A3 | 22.77 | 32.7 | 11.3 | 8 |
| A4 | 28.09 | 32 | 15 | 10 |
| A5 | 23.08 | 25 | 12 | 3 |
| A6 | 18.45 | 95 | 25 | 18 |
| A7 | 24.21 | 117.4 | 42 | 33 |
| A8 | 16.83 | 84 | 17 | 17 |
| A9 | 24.11 | 107 | 35 | 33 |
| A10 | 22.63 | 94 | 34 | 21 |
>TRINITY_DN43956_c2_g2_i2 from sample A6 / Example spliced isoformATCACTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCAGAAATCCGTTTAAACTAGAGAAAGCAAGACAGATTTG
CAGATGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGT
GTGTGTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGT
TTGGAGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAAT
ACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCA
GTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGC
AACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATT
TCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTT
TGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAA
CTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATCAGTAAAGAAAGTCATCAGTTGAATCATGG
>TRINITY_DN43956_c2_g2_i1 from sample A6 / Example unspliced isoform:ATCACTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCAGAAATCCGTTTAAACTAGAGAAAGCAAGACAGATTTG
CAGATGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGT
GTGTGTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGT
TTGGAGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGgtacccaggtcgccattggcatccagtcgctcctcatgctcaagggaacacgcaggctgctccacacttgatcttctgggctagtctt
cactcaaaagctccacttcaccattttaccagGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTC
CAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAA
AGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACT
TCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAAT
TAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGT
AAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATCAGTAAAGAAAGTCATCAGTTGAAT
CATGG
Intron 3 GTTAATTGAT ... CTGAAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.64 | 18 | 62 | 56.2 |
| A2 | 58.49 | 30 | 43 | 41.6 |
| A3 | 60.99 | 21 | 31.8 | 34.4 |
| A4 | 50.31 | 26 | 32 | 20.8 |
| A5 | 63.18 | 12 | 25 | 16.2 |
| A6 | 63.87 | 53 | 95 | 92.8 |
| A7 | 57.52 | 77 | 117.2 | 92 |
| A8 | 64.14 | 49 | 84 | 92.2 |
| A9 | 54.13 | 91 | 107 | 110 |
| A10 | 58.45 | 65 | 94 | 90 |
>TRINITY_DN41160_c0_g2_i9 from sample A8 / Example spliced isoformCTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGA
TGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGT
GTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGG
AGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGA
AAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACAT
GCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGA
AGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGA
GGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTC
TAGATTAGGTTGAACAAACTATGTGGATGAGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATT
TCAGTTTATCAGTAAAGAAAGTCATCA
>TRINITY_DN41160_c0_g2_i1 from sample A8 / Example unspliced isoform:CTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGA
TGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGT
GTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGG
AGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGgttaattgattcgcacaatgcctgtatgtatgctgaaatcagGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTG
GTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGGTACCTCATATAATGTTTGAATTATTAGCACTAGGAGCGGTACTTAAATTC
ATCATTTCATAATTGTTTCCAAACCCATGTGCTAAGTATATTTGATTGGCTCTCTATTTTACAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTAATAGCATAGTTGGATGGGATATTCACTTAAACATACTGAGTAACTTGAACCCTATCCTTTTA
TATTGTGATACCATTTTTGTTCATTCCCATGAGCATCATTGTCAATGTGCTTTCTTCACTGTCAAGTTTCAACTCAGGAGACTAAGATAGTGGCTATGCCTATGTTTTTCAAGTGCACAGTTCTCAAGTGCCTATGTTTTTTTTCAATAATTTTACATTTGCAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAA
TATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAG
AAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTG
TGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAA
CAAACTATGTGGATGAGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATCAGTA
AAGAAAGTCATCA
Intron 4 GTACCTCATA ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.45 | 38.8 | 8 | 6.6 |
| A2 | 26.63 | 28.1 | 10 | 7.6 |
| A3 | 9.04 | 31.2 | 3 | 4.7 |
| A4 | 0 | 23.2 | 0 | 3.8 |
| A5 | 21.59 | 14.7 | 4 | 3.1 |
| A6 | 13.27 | 159.6 | 23.9 | 23.7 |
| A7 | 13.46 | 146 | 22 | 21.8 |
| A8 | 15.91 | 157.8 | 29 | 23.7 |
| A9 | 11.02 | 154.3 | 18.7 | 20.8 |
| A10 | 10.56 | 139.6 | 16 | 21 |
>TRINITY_DN114140_c0_g1_i6 from sample A1 / Example spliced isoformTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGATGAGGGTGCCCTGCATTTAC
ATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGTGTTTTGGAGACTGTCCAAGG
TCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGGAGTGAGCTTGGGCCTTTTTG
TTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTT
GCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAG
GTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACA
TTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGAC
TTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAA
TTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAG
GAGTTACTTAAGATTTTGAATTCCC
>TRINITY_DN114140_c0_g1_i2 from sample A1 / Example unspliced isoform:TTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGATGAGGGTGCCCTGCATTTAC
ATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGTGTTTTGGAGACTGTCCAAGG
TCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGGAGTGAGCTTGGGCCTTTTTG
TTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTT
GCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGgtacctcatataatgtttgaattattagcactaggagcggtacttaaattcatcatttcataattgtttcc
aaacccatgtgctaagtatatttgattggctctctattttacagATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATT
GGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAA
ACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCT
TCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTT
GTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTCCC
Intron 5 GTAAAGTACT ... TGTGTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.26 | 23 | 9 | 1 |
| A2 | 27.68 | 30.1 | 16 | 7 |
| A3 | 15.28 | 33.8 | 9 | 3 |
| A4 | 16.2 | 20.9 | 8 | 0 |
| A5 | 24.62 | 9.3 | 3 | 3 |
| A6 | 18.12 | 95.4 | 25 | 17 |
| A7 | 18.6 | 101.6 | 30 | 16 |
| A8 | 20.92 | 106.7 | 30 | 26 |
| A9 | 14.13 | 129.2 | 32 | 10 |
| A10 | 15.65 | 92.7 | 20 | 14 |
>TRINITY_DN41160_c0_g2_i9 from sample A8 / Example spliced isoformCTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGA
TGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGT
GTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGG
AGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGA
AAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACAT
GCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGA
AGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGA
GGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTC
TAGATTAGGTTGAACAAACTATGTGGATGAGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATT
TCAGTTTATCAGTAAAGAAAGTCATCA
>TRINITY_DN41160_c0_g2_i11 from sample A8 / Example unspliced isoform:CTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCATAAATCCGTTTAAAATAGAGAAAGCAAGACAGATTTGCAGA
TGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGTGTGT
GTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGTTTGG
AGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAATACTG
GTAGGATGCCAGTAAGTTTTGCAGTTAAGgtaaagtactcgccaggattccagtgagctggttaagactataagccttggaaatactaaaattttagttataggatacttatttaattgattaaagaagaatgccatctgaatacttcaaaaatcatatgaaaagatatataggtattcacttcaatacagggtagttca
tttgaaatagattgcctgtatagccttcgttgagaaaagactatggaaaaatatgagatttgacttctcttttaagtgaaggaagaagtaaaacacgtgctgtttcagtttttaattatttcttatgactcgttgtgtcccagTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAG
TTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGGTACCTCATATAATGTTTGAATTATTAGCACTAGGAGCGGTACTTAAATTCATCATTTCATAATTGTTTCCAAACCCATGTGCTAAGTATATTTGATTGGCTCTCTATTTTACAGATTGACTTCTTTTATAATGCTG
AATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGGTAATAGCATAGTTGGATGGGATATTCACTTAAACATACTGAGTAACTTGAACCCTATCCTTTTATATTGTGATACCATTTTTGTTCATTCCCATGAGCATCATTGTCAATGTGCTTTCTTCACTGTCAAGTTTCAACTCAGGAGACTAAG
ATAGTGGCTATGCCTATGTTTTTCAAGTGCACAGTTCTCAAGTGCCTATGTTTTTTTTCAATAATTTTACATTTGCAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTT
CTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTG
GATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACA
AATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGAGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTT
TGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATCAGTAAAGAAAGTCATCA
Intron 6 GTAATAGCAT ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.87 | 52.2 | 2.4 | 13 |
| A2 | 16.4 | 24.6 | 1.9 | 4 |
| A3 | 14.5 | 37.4 | 1.1 | 6 |
| A4 | 15.1 | 28.1 | 1.6 | 4 |
| A5 | 7.41 | 13.9 | 2.1 | 1 |
| A6 | 21.23 | 175.1 | 14.8 | 43 |
| A7 | 21.19 | 184.8 | 7.8 | 47 |
| A8 | 17.49 | 168 | 7.7 | 33 |
| A9 | 17.3 | 182.3 | 9.7 | 35 |
| A10 | 20.14 | 167.6 | 13.8 | 39 |
>TRINITY_DN43956_c2_g2_i2 from sample A6 / Example spliced isoformATCACTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCAGAAATCCGTTTAAACTAGAGAAAGCAAGACAGATTTG
CAGATGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGT
GTGTGTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGT
TTGGAGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAAT
ACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCA
GTGTGATCACTATGTTTCATACAGGTATAAATATAAGTTTCTACATGCAACTACTGCAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGC
AACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGATGAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATT
TCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAGGTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTT
TGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGTTGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAA
CTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATCAGTAAAGAAAGTCATCAGTTGAATCATGG
>TRINITY_DN43956_c2_g2_i3 from sample A6 / Example unspliced isoform:ATCACTATATTCTGGTGTAATTTCTTCCGAAACCTGGGGTCATCCCTTTCGACAACTAAGTAGGAGGACATTCACCTATTGAGCGGGAACTGAAAACAAATTGGTGCATCATATGAACAATGTGCTCCAACCTTAGCCAAATTCATCTCAGTATATGAATGCAGAAATCCGTTTAAACTAGAGAAAGCAAGACAGATTTG
CAGATGAGGGTGCCCTGCATTTACATGTCTGCTCCATAATCACGATCCACAAACAATTTCTTTGTGGGCATTGAAAATACATAGATCTATCGCTTTTGGTTTATGGCAGGTACGGTGAATATCGAGAGGATGACTTTGGCATCACCCGCAGAAGATAGAGGAGGAGGAGGAGGGGGGGAAGGAGATGGCGCAGAGTTGGT
GTGTGTTTTGGAGACTGTCCAAGGTCTTGTGGATGCCTTGTCCTCTGTTAGATGGAAAAAGCAACAGGATGCACTTGTTGAGTTGTCAGAGCATGGACTTGTGATAATTGTCGAAGAACGGGGATGTCTTCAAGCACGAGTTTATTTCAGGAAAGAGCTTTTCCGTAGTTATGCTTACAATGCTGAGGTGCGACCAAGGT
TTGGAGTGAGCTTGGGCCTTTTTGTTGACTGCCTCAATACTTTTACATTATCTGGTGGGACGACAGCTCTTGAGCTTCGTTATCCCGGACCTGACATGCAACTCCTTCTTAGGTTAATTGATTCGCACAATGCCTGTATGTATGCTGAAATCAGGACCAGGATTCCAGAAACAATTCCATGGGATTACAATGTTGAGAAT
ACTGGTAGGATGCCAGTAAGTTTTGCAGTTAAGTCTACTGCATTGAAAGAAGCAATAGAGGACCTTGAATGGCCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGGTACCTCATATAATGTTTGAATTATTAGCACTAGGAGCGGTACTTAA
ATTCATCATTTCATAATTGTTTCCAAACCCATGTGCTAAGTATATTTGATTGGCTCTCTATTTTACAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGTTTCATACAGgtaatagcatagttggatgggatattcacttaaacatactgagtaacttgaaccctatcct
tttatattgtgataccatttttgttcattcccatgagcatcattgtcaatgtgctttcttcactgtcaagtttcaactcaggagactaagatagtggctatgcctatgtttttcaagtgcacagttctcaagtgcctatgttttttttcaataattttacatttgcagGTATAAATATAAGTTTCTACATGCAACTACTG
CAAATATTCCAACTGGTGTTTTAAAGGATAACAGAGGGAGCAAGTTAACAATTGGGAGCGGTGGGCTGTTGAAGATTCAACATTTGGTTTCTGTTCGACCTGCACCTGGCCAGCAGCAGCCCGTAGATCCTAGTGGCAATAAGCAACCACAGAATCGTATTTCTCACATTGAATTTTTTGTGAAACCGGAAGAAGATGAT
GAAGAAACAAACGATTCCTAGACTTCTATTAACAGGGTCATCATGAATCAGAAACACTTCTAGCAGGTTGCAGAAGAAATTCACAGATTGGATAAAGAAATAGAAGCGTGCTTCCTTGAGAGCTACAAATTGGTTAGTATGATTTCAGGGAAAACGATTGTACCTGACTTGTAACTGTAAACTAAACAGAGGTGGCAAAG
GTTGTGTATTTTTGAAACTGCAATTAACCATACAAAAAATGTTACTAGAGGCTTCAACGTTTAGTACTTTGCTAGTTGCTACCATGTACAAATTTAGCATGGCTAATTTTTTAGAGTCAATACTAGAGAGATGGCCTGTATTTTTGAGTTCTTACATTGGGTCCAAAATTGATGGTGGGCATATAGAGTCTAGATTAGGT
TGAACAAACTATGTGGATGGGAGTAAAATGCTGTTCTTAAGAACATAGATGTTGTAATCTAGGTATTAGCTTTTATGGCTACTGTGTCTTTGCAAGTTACATTCCTGCAGGCTAAATGACAGGTTTGTCCCTCCATAGCTGTAACTTCAAGGAAGCTGAAATTTATAGGAGTTACTTAAGATTTTGAATTTCAGTTTATC
AGTAAAGAAAGTCATCAGTTGAATCATGG