NA ----> NA

Intron 1 GTATGGTTTC ... GTGTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	63.64	18	35	28
A2	54.02	20	21	26
A3	57.45	10	13	14
A4	74.19	4	12	11
A5	38.1	13	11	5
A6	31.3	90	46	36
A7	36.46	88	71	30
A8	43.23	86	87	44
A9	37.74	80	66	31
A10	33.59	87	57	31

>TRINITY_DN40438_c3_g1_i7 from sample A6 / Example spliced isoform

CAGGAACCGACGACCTTCAGTTGTTTGCAGGCGGGGGAGCTGTTGGCCTGCGATATCTCTTCCGTAGTGAGATTACTGCATCGCATCTTGGACAGAGCCCAGATTCCACCGTCAGAGCCCAGATGCAGAGTTATAAAGAAAGGAAAGAAAACAGGGTCAGTCCCTTCTTCTTTCTACTTTCATCATGCCATTGTCACTGA
ATTTTAAAGTACCTCCACCGACCGGAGTTCAGGTCTCATGACAAGCCAGATTTTGCTACTGTTCATGGAATGTAATCTAAGAATGGTTTTGTTGTATGTGGATTAAAATTTGAGTTCATTTAGCAATCGGGACTTTTTTACTGTGAAATATTCGATTATTAGTTGTAATTTTCAAAATTATCTATACTCTACACACTTCT
TCCAAAACATGTTCTGATTACTCTGGAGAAACTTGAAAATGGTGTGCTTCGCACCTGCCCTTCTCCGGGCAGAGTGTGTGCGGAGTGGACTCGTCCTACCGTCCTACTTTGATTGATCTTTGACTCTTATACAATCAAAATGTCAAAAAATCTCTTCAATATTCATTTGAAAGATCTGGTTTAACAGCA

>TRINITY_DN40438_c3_g1_i2 from sample A6 / Example unspliced isoform:

CAGGAACCGACGACCTTCAGTTGTTTGCAGGCGGGGGAGCTGTTGGCCTGCGATATCTCTTCCGTAGTGAGATTACTGCATCGCATCTTGGACAGAGCCCAGATTCCACCGTCAGAGCCCAGATGCAGAGTTATAAAGAAAGGAAAGAAAACAGgtatggtttcgtgatctctgacttcccctatactgttaatcaaaga
aatgaaagaaatcactatatcaatctacacttgatagttagaaatgtacaagaaaaggcatattaggaatgcattcgtagatcagatttgttagattattttcagctggatcaacttggcctatactgctaatgaaataaaggaaagaaatcaatatatcaatgtagacttgatagttagaaatgtacaagaaaagacat
attaggaatgcattcgtacatcagatttgttagattattttcagcagtatcaactggttagcaacaggatcaagaaattgtccattcttaattctcttacaaactgttccaccctactagaggtaaatttagataataatcatgttacgggattcggtaaatttgccttattctttgggccaccactctacaaagttgaa
ttacataaactggcggcttcactgcattcgttggagaaatatctccgcagtttggaaacctaactagtttatgacttatcggtttacatgacaatgtgtttacagGGTCAGTCCCTTCTTCTTTCTACTTTCATCATGCCATTGTCACTGAATTTTAAAGTACCTCCACCGACCGGAGTTCATGTCTCATAACAAGCCAG
ATTTTGCTACTGTTCATGGAATGTAATCTAAGAATGGTTTTGTTGTATGTGGATTAAAATTTGAGTTCATTTAGGCAATCGGGACTTTTTTACTGTGAAATATTCGATTATTAGTTGTAATTTTCAAAATTATCTATACTCTACACACTTCTTCCAAAACATGTTCTGATTACTCTGGAGAAACTTGAAAATGGTGTGCT
TCGCACCTGCCCTTCTCCGGGCAGAGTGTGTGCGGAGTGGACTCGTCCTACCGTCCTACTTTGATTGATCTTTGACTCTTATACAATCAAAATGTCAAAAAATCTCTTCAATATTCATTTGAAAGATCTGGTTTAACAGCA