sp|F4HYR4|OFT15_ARATH ----> O-fucosyltransferase 15
Intron 1 GCATAAGCAT ... CTGACGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.51 | 97 | 257 | 230 |
| A2 | 68.83 | 72 | 147 | 171 |
| A3 | 69.98 | 92 | 193 | 236 |
| A4 | 70.82 | 75 | 189 | 175 |
| A5 | 68.82 | 58 | 137 | 119 |
| A6 | 62.24 | 27 | 48 | 41 |
| A7 | 61.32 | 147 | 224 | 242 |
| A8 | 62.22 | 34 | 51 | 61 |
| A9 | 58.2 | 130 | 184 | 178 |
| A10 | 62.2 | 141 | 207 | 257 |
>TRINITY_DN123069_c0_g1_i2 from sample A3 / Example spliced isoformAGGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACA
AAAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAA
GCTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGAGAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACAC
CAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAGCCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTG
CACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATATTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCA
CTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAAC
ACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGCGAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATA
TATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTT
AGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATTTATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGA
AAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGTGTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCT
TTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATATATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACC
ATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAGCCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTA
TAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCTACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAAT
TCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTGTAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTG
CCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTTTTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGG
AAAATGAATTTTGACACCCA
>TRINITY_DN123069_c0_g1_i1 from sample A3 / Example unspliced isoform:AGGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACA
AAAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAA
GCTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGgcataagcataagaacccttctcttcattgttttttttgggtttcagctgctatttgcgtttgtacaacacaataataataattatgcaaattgaagatgggttctgacgacagAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATG
AGAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACA
GCCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGAT
ATTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGCTAATCAAGTCAAAGATACGTTCAGCAGAGAATTCCAGTCGGTTGCAACTCTGTCTG
AATAAAATATTTAAATCATCAATAAAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACA
CAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGCGAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATAT
ATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTA
GGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATTTATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAA
AGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGTGTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTT
TGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATATATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCA
TTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAGCCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTAT
AGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCTACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATT
CCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTGTAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGC
CTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTTTTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGA
AAATGAATTTTGACACCCA
Intron 2 GTCAGCTTAA ... TTAACTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.24 | 196.4 | 42.7 | 18 |
| A2 | 11.46 | 141.4 | 19.3 | 14.1 |
| A3 | 10.44 | 181.9 | 22.5 | 16.6 |
| A4 | 13.86 | 163.8 | 26.9 | 16.1 |
| A5 | 15.9 | 72.9 | 13.6 | 10.8 |
| A6 | 9.8 | 62.4 | 7.6 | 5.5 |
| A7 | 11.87 | 206.3 | 30.1 | 26.1 |
| A8 | 9.19 | 116.9 | 12.3 | 12.1 |
| A9 | 9.28 | 177.2 | 19 | 18 |
| A10 | 15.28 | 219.8 | 43.1 | 23 |
>TRINITY_DN112317_c0_g1_i2 from sample A1 / Example spliced isoformAGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACT
TTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGC
GAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATT
GAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATT
TATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGT
GTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATA
TATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAG
CCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCT
ACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTG
TAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTT
TTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAAAATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATT
TTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAGTTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
>TRINITY_DN112317_c0_g1_i9 from sample A1 / Example unspliced isoform:AGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGCTAATCAAGTCAAAGATACGTTCAGCAGAGAATTCCAGTCGGTTGCAACTCTGTCTGA
ATAAAATATTTAAATCATCAATAAAGGTTGGATACTTAATTTAAGGATGTATTAACTTGCTGGATATTTCAGTTTGAGAGACTGTGTTTTAACTTTTCAGTTGTAAGAGACACACCATTTCAAAACTTAGTCGATTGAATTGGCATTTAGAGGATCATTCGTTAAATATCTGGTCAGATAACTGATTATATGGGTATCAT
GAAGATTTGTAATCCTGGCTTGATTAGATGGCATACTGCACAACTAAATGAACTATTATGAGATTGAATTCTGATAATTGTGCTCACTGCTAGGGTTGTAGATGCTCTACAGAATACGTAGTATGTTTTATCAGACTTGTTTCATCTCTGTTGCAGCTTAATTTATTTTGCATGTGGGAAAATTGTATTGTTCATTGTTT
CTGGATGTAGGACTGTCAACTGCGATCTTTAAGGCTACTGTAATTTCTTTTCTTTCTTTCTATTTTTCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGgtcagcttaaattgtattacatttgtattcaaagttcaaa
catgtgcatacagatattagagacaagttgggttcaaattaacttggaatctaaaattttgttaactctagGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGGTAACATTGTATCCTCTTCATTCTCATTT
CTGGTTCATTGAATTTGAATTTCTGGCATCTGAAGCCTCATTGTATACTGCCTGTTTTGATGGCCTTGCGGTG
Intron 3 GTAAGATTCT ... TTCTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.45 | 175 | 37 | 2 |
| A2 | 25.18 | 104 | 35 | 0 |
| A3 | 16.3 | 154 | 30 | 2 |
| A4 | 17.54 | 141 | 30 | 0 |
| A5 | 14.29 | 60 | 10 | 0 |
| A6 | 13.22 | 105 | 16 | 0 |
| A7 | 17.71 | 302 | 65 | 0 |
| A8 | 16.73 | 224 | 45 | 0 |
| A9 | 20.07 | 223 | 56 | 0 |
| A10 | 15.48 | 202 | 37 | 0 |
>TRINITY_DN112317_c0_g1_i2 from sample A1 / Example spliced isoformAGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACT
TTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGC
GAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATT
GAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATT
TATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGT
GTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATA
TATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAG
CCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCT
ACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTG
TAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTT
TTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAAAATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATT
TTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAGTTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
>TRINITY_DN112317_c0_g1_i1 from sample A1 / Example unspliced isoform:TGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGG
CAGCCTTgtaagattctcatctcaacctttctcacttctgggttgtagggagggataactgcaagtttttaatgcctctgaaatattcttcagtcagtaatattggttcttacagattttgtttctgaacagGTAACTGACATGGATATCATG
Intron 4 GTTGGATACT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.46 | 112 | 17 | 12 |
| A2 | 6.59 | 78 | 7 | 4 |
| A3 | 4.14 | 81 | 7 | 0 |
| A4 | 11.11 | 76 | 8 | 11 |
| A5 | 8.43 | 38 | 5 | 2 |
| A6 | 7.04 | 33 | 5 | 0 |
| A7 | 6.01 | 86 | 8 | 3 |
| A8 | 8.7 | 63 | 9 | 3 |
| A9 | 7.32 | 76 | 8 | 4 |
| A10 | 8.57 | 80 | 9 | 6 |
>TRINITY_DN112317_c0_g1_i8 from sample A1 / Example spliced isoformAGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGCTAATCAAGTCAAAGATACGTTCAGCAGAGAATTCCAGTCGGTTGCAACTCTGTCTGA
ATAAAATATTTAAATCATCAATAAAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACAC
AACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGCGAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATA
TCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAG
GGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATTTATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAA
GAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGTGTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTT
GAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATATATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCAT
TTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAGCCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATA
GAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCTACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTC
CCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTGTAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCC
TATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTTTTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAA
AATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATTTTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAG
TTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
>TRINITY_DN112317_c0_g1_i9 from sample A1 / Example unspliced isoform:AGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGCTAATCAAGTCAAAGATACGTTCAGCAGAGAATTCCAGTCGGTTGCAACTCTGTCTGA
ATAAAATATTTAAATCATCAATAAAGgttggatacttaatttaaggatgtattaacttgctggatatttcagtttgagagactgtgttttaacttttcagttgtaagagacacaccatttcaaaacttagtcgattgaattggcatttagaggatcattcgttaaatatctggtcagataactgattatatgggtatcat
gaagatttgtaatcctggcttgattagatggcatactgcacaactaaatgaactattatgagattgaattctgataattgtgctcactgctagggttgtagatgctctacagaatacgtagtatgttttatcagacttgtttcatctctgttgcagcttaatttattttgcatgtgggaaaattgtattgttcattgttt
ctggatgtaggactgtcaactgcgatctttaaggctactgtaatttcttttctttctttctatttttcagGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGTCAGCTTAAATTGTATTACATTTGTATTCAAAGTTCAAA
CATGTGCATACAGATATTAGAGACAAGTTGGGTTCAAATTAACTTGGAATCTAAAATTTTGTTAACTCTAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGGTAACATTGTATCCTCTTCATTCTCATTT
CTGGTTCATTGAATTTGAATTTCTGGCATCTGAAGCCTCATTGTATACTGCCTGTTTTGATGGCCTTGCGGTG
Intron 5 GTAACATTGT ... TTTCGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.49 | 190 | 48 | 44 |
| A2 | 18.1 | 129 | 38 | 19 |
| A3 | 16.77 | 139 | 36 | 20 |
| A4 | 20.03 | 159.7 | 60 | 20 |
| A5 | 23.53 | 52 | 24 | 8 |
| A6 | 13.33 | 52 | 12 | 4 |
| A7 | 17.24 | 192 | 54 | 26 |
| A8 | 16.15 | 109 | 24 | 18 |
| A9 | 15.93 | 195.3 | 53 | 21 |
| A10 | 15.92 | 203.3 | 59 | 18 |
>TRINITY_DN97377_c0_g1_i5 from sample A4 / Example spliced isoformGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAAAAAGAAAGGAGG
GGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAGCTTCTCTGAGAT
ACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGAGAGTGGGATGAG
GATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAGCCTCCCAGAGCA
GGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATATTCATAGTGCTA
GGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGC
AGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGCGAGTAGCGGTGT
GTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGGC
AGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATTTATCCCCAAAAT
TCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGTGTGAGTTTGGTG
GTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATATATCTTGCAGGT
GCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGGTAAATCATAGAAGTTGCAATCATTTAGTAACTGCTTTCCTGGTTAGTAGGTCCAATATTTATGAGAAACCTGATTC
TTATTTTTTTTGTCAACTGTGCTTAGTAGGTCCAGGTCAGGTTTAGAAATCATCAAATAGTAGCTTTCTTCTGTAAGAAAGACTGCTTTTCCAGTTATTTCCCATCTCTTCTTTCTTTGTTTCACCTATTAACAAACCAATTAAGTGTAGGAGACAGCAAAAGTTTACATCAGAGAAAAGTCTCTTAGAGCCTCCTCTTT
ACTTGCAATAGCATTGATACATGCATGACGAGTAGTTCATAATTTAGTGTTTAGGC
>TRINITY_DN97377_c0_g1_i8 from sample A4 / Example unspliced isoform:ACTGCCTCAAAAGTAGTAATGCTTATAGCTTGTATCTCCAGTCAATCCTTTTTTATGATTTTGCAAGTACCTATTTCATTTGCATCCACTTCAGTTCTCAACTGTAGGGCTCTTTGTATGTGTGCGCGCAGGAATGTTGTACACGGTTCCATCTTGCCCAAGAGCTTACGTGTCACCCAAGGAGTTTCAAACCACTCTGA
AGCAGTGGTGTTCTTTGTGTCAACGTTGTAGACAATATTGGGGACATTTTTTGTGTTGTAGTATCTCCTTCCTCTCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATG
GGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGgtaacattgtatcctcttcattctcatttctggttcattgaatttgaatttctggcatctgaagcctcattgtatactgcctgttttgatggccttgcggtaacaatttctattatttggatatgcttctca
gtcagtagagggcctttctggaactatgttcagtattttgtgcatattattcgttgaagtttttcttttgtttgatttgttaaattttatgtcgctcagaactttgacattctagttatttattacatgttttttcgagtagAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCT
AAATCAGCAGCGAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAAT
CATTGGATATTGAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCAT
GCTCTGAAATTTATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGC
CTATTCCATGTGTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTG
GAACACACATATATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACG
GACTCAGGGAGCCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGC
AAGGAGCATCTACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAA
AATAAGTTTTGTAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGT
CACCGTTTTTTTTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAAAATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTG
CGTTAAGGATTTTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAG
Intron 6 GCTAATCAAG ... ATCAATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.79 | 221.9 | 104 | 112 |
| A2 | 32.3 | 204.7 | 117 | 78 |
| A3 | 30.9 | 189.4 | 88 | 81 |
| A4 | 29.24 | 214.6 | 101 | 76 |
| A5 | 31 | 82.7 | 36 | 38 |
| A6 | 29.67 | 91.3 | 44 | 33 |
| A7 | 28.08 | 289.7 | 140 | 86 |
| A8 | 31.91 | 160.3 | 87 | 63 |
| A9 | 30.99 | 216.2 | 118 | 76 |
| A10 | 27.25 | 319.2 | 159 | 80 |
>TRINITY_DN112317_c0_g1_i2 from sample A1 / Example spliced isoformAGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACT
TTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGC
GAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATT
GAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATT
TATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGT
GTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATA
TATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAG
CCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCT
ACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTG
TAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTT
TTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAAAATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATT
TTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAGTTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
>TRINITY_DN112317_c0_g1_i8 from sample A1 / Example unspliced isoform:AGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGgctaatcaagtcaaagatacgttcagcagagaattccagtcggttgcaactctgtctga
ataaaatatttaaatcatcaataaagGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACAC
AACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGCGAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATA
TCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATTGAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAG
GGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATTTATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAA
GAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGTGTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTT
GAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATATATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCAT
TTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAGCCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATA
GAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCTACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTC
CCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTGTAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCC
TATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTTTTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAA
AATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATTTTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAG
TTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
Intron 7 GCTAATCAAG ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.34 | 225 | 98 | 12 |
| A2 | 34.49 | 207 | 109 | 4 |
| A3 | 29.67 | 192 | 81 | 0 |
| A4 | 30.67 | 217 | 96 | 11 |
| A5 | 30 | 84 | 36 | 2 |
| A6 | 31.34 | 92 | 42 | 0 |
| A7 | 31.29 | 292 | 133 | 3 |
| A8 | 33.61 | 162 | 82 | 3 |
| A9 | 33.13 | 218 | 108 | 4 |
| A10 | 32.42 | 321 | 154 | 6 |
>TRINITY_DN112317_c0_g1_i2 from sample A1 / Example spliced isoformAGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACT
TTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGAACCTCCATCTCCGGAAAACAGCACAGGATATATTTTGGTCAGTGCAAATGGAGGTCTAAATCAGCAGC
GAGTAGCGGTGTGTAATGCTGTTGCTATTGCACGTTTGCTGAATGCAACTTTGGTTCTTCCAAAGTTTCTTTACAGCACTGTTTGGAAAGATAGCAGCCAGTTCGGAGATATATATCAAGAGGAATATTTTGTAAACTACCTTAAGCCAGATGTCAATATTGTAAAAGAACTTCCTTTGGAGCTACAATCATTGGATATT
GAGGCGATTGGCAGCCTTGTAACTGACATGGATATCATGAAGGAGTCGAAGCCAAGTTATTATCTTGCAAATATTCTCCCCCTTATACTGCGTAACAGGGTGGTTCACTTTTTAGGGTTTGGTAACCGTTTGGCCTTTGATCCAATACCATTTGAATTGCAGAGATTACGATGCAGATGCAATTTCCATGCTCTGAAATT
TATCCCCAAAATTCAGGAAACTGGTGCATTGTTGATACAAAGGATGCGTGAACATAGTAAAAGATGGGGCCCTCTAGATGAACATTTGATTGGGGTACCTTCACCATATCTGAAAGAAGGGGAAGAAGTTTCTCATAGCTCTTCCAAATATTTGGCTTTGCATCTAAGGTTTGAAATTGATATGGCAGCCTATTCCATGT
GTGAGTTTGGTGGTGGTGACGCTGAGAGAAGGGAGTTACAAGCATACAGAGAGATTCATTTTCCCACACTAACAATTCAAAAGAAGAGTGTCAAAATACCTTCTGCTGCAGCTTTGAGGGCCTTGGGTAGATGTCCATTGACACCAGAAGAAGCTGTTCTTATGCTTGTTGCACTAGGTTTTAAACGTGGAACACACATA
TATCTTGCAGGTGCTCATATATATGGGGGACAATCCAGGATGGTTGCGTTGACTAGTCTGTACCCTAATTTAGTCACTAAAGAAGACCTCCTATCATCAGAAGAAATTAAACCATTTACCAATTTCTCATCTCAGTTGGCAGCGCTTGATTTTATTGGTTGTGCTGCTGCTGATGCATTTGCAATGACGGACTCAGGGAG
CCAACTTTCATCTCTTGCATCAGGGTATCGGATCTATTATGGGGGTGGGCACCTTCCTACAATACGCCCCAACAAGAAACGGTTAGCTGGTATATTCTCAAAAAATAATACTATAGAATGGAATGAATTTCAAGAAAGAGTCAGAAAGACCGTTAGGGAAAGTAAAAGAATACAGGTTCGTCCAATTGCAAGGAGCATCT
ACAGACATCCTAGGTGCCCTGAATGCATGTGCAATATAGAAACTTCCCAAACGGAAAGCAATGTACAGTAGCACGATCATATTGATTCTGCACCCGCCCCCCCCTGGTCCAATTCCCCAAACATCCTTTTGTAATGTAGCTATATTTCAGGCCAGCTTCCTTCCCTTTCAGGGCTTGGAAATTCATCAAAATAAGTTTTG
TAGGAATTAGTCTACATTCATTTGACTAACCATCTGATTTCATTGGCTCGTTCATTCTTGTTATTCTTATTCATTTCAAAATCAAACTTTTCCAAGAAAATTGATCTTTGCTGCCTATTGCCATAGCAAATGGAGACTGAAGTCCCCTTTTTTGAAGACGTGATTTGGCAGGAATTGATGTCAGAAGGTCACCGTTTTTT
TTCTTCTGTTTCATTGTATTGAATTCATGCCTAGCCTTGGAACGATGATTGAACAAACTTGACAAATGTTTCCACTGTGTTAATGAACATTACTCTATTGTATTCAATATAGGAAAATGAATTTTGACACCTATATACGATTTTCTTCTTTCTCTGCACTGTAAGTATTGCTCATTGAAAATGTGTTTGCGTTAAGGATT
TTAAATAATTTGTAAGTGGTGGTGATTTAATTGAGACCTTGTCCTATTGGCACATATTCTACTAGAATGAGATGCGAGATGACTTGTGGATGGTATTGCTATTATGTTTTCCCAGTTGTGTGAGCATAATGTCATCGCTTTTATTTTCTCTATGCAGTAGCAACTTAAAATTTC
>TRINITY_DN112317_c0_g1_i9 from sample A1 / Example unspliced isoform:AGAGGGGGAGGAGGGGATTTCAATTCCAGAGTATAGGATAGCTCCATTGATTTCATTTTACTCAGTCACCTCCCATGCTATCTTAACTTACAAGCCAACCTTTCTGCCGCAACCAACGATGGGTGAGTTGGCAAGTGTGAATATGCGATTTAAGGAGACTCGAAGGTGGAAGCGGCCAGGCAAGCGGATTAACTGAACAA
AAAGAAAGGAGGGGGAGAGCTGTGAGCGGCCAGCCCAGCGCATTCCACGGGTGTGTTGAATATACAATTCAAAAGAATATACATTTTACTGGCATTGGATTGAAGTAGAAGTATGTATTTCTATTGGTTCACAGGGCTGATCCGTCCGATGGATGGGTTGAAAGAAGATTATCGGACCTCTTCCTCTCCGAAATTTCAAG
CTTCTCTGAGATACCAGTCATTCGATGATGATTTGGCATAGGCATAAGCATAAGAACCCTTCTCTTCATTGTTTTTTTTGGGTTTCAGCTGCTATTTGCGTTTGTACAACACAATAATAATAATTATGCAAATTGAAGATGGGTTCTGACGACAGAATGCAGGAAATTGGGTCTGAATTATCAGACAAGGATGAAGATGA
GAGTGGGATGAGGATAAACACAAAACATATAGAGGGTCATGGCAATGGCAATGCATGGAGCAGCTCTTTCTTGATGAGATCCGCATCCACATCCACATCCACATTATCGACACCAAGAAGCAGGCAGGGATCCCCCAGAAGTCCCTCGCCAACAAACTCTTCCTCCTCGCCTTTCAGGGATGTAGCCCCTCTCAAAACAG
CCTCCCAGAGCAGGCTCTCAAATGCATATTCGTTCTCATCTTCAGCTACTCCAAAGCACCAGGTGAAGAAGGGATGGACGAATTTTCTATACGAAACGAAAAAGTCAAGACTGCACAGTCCGAGAACGGAGTTGCAGGAAACAGCATCAGGCACAACAATAAGGAGAAGGCAGAGGAGGACGCGTGTGAGAGGGATGATA
TTCATAGTGCTAGGATTGCTAGCAGCCTTTTTTTTATTGGATTGGTGGGTGTTGTCCCGTTTGCAGGATGATCATAATCAGCATCATCATCTTCTTCTTCATGAGTACCCCCACTCCCCAGACAAGTCAAGACGGTTGCAGgctaatcaagtcaaagatacgttcagcagagaattccagtcggttgcaactctgtctga
ataaaatatttaaatcatcaataaaggttggatacttaatttaaggatgtattaacttgctggatatttcagtttgagagactgtgttttaacttttcagttgtaagagacacaccatttcaaaacttagtcgattgaattggcatttagaggatcattcgttaaatatctggtcagataactgattatatgggtatcat
gaagatttgtaatcctggcttgattagatggcatactgcacaactaaatgaactattatgagattgaattctgataattgtgctcactgctagggttgtagatgctctacagaatacgtagtatgttttatcagacttgtttcatctctgttgcagcttaatttattttgcatgtgggaaaattgtattgttcattgttt
ctggatgtaggactgtcaactgcgatctttaaggctactgtaatttcttttctttctttctatttttcagGGGGGATGGAGCAAATTTGCCAAAGGGAAAAGACCTCCGAGAGTCCTGTATGACAGACTTTTAGCTTTAGCAGCCCATGCCCTTGCAGAGGTCAGCTTAAATTGTATTACATTTGTATTCAAAGTTCAAA
CATGTGCATACAGATATTAGAGACAAGTTGGGTTCAAATTAACTTGGAATCTAAAATTTTGTTAACTCTAGGGAGAGTCCAAGCCTGAGCCAAAAGAATTATGGGAAGAACCCTTTTTGCAGGCGTCTGCATGGAAGCCTTGTGCAGATGAACACAACTTAGACTTTCGAGGTAACATTGTATCCTCTTCATTCTCATTT
CTGGTTCATTGAATTTGAATTTCTGGCATCTGAAGCCTCATTGTATACTGCCTGTTTTGATGGCCTTGCGGTG