NA ----> NA
Intron 1 GTACAGCAGC ... TTGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.05 | 17 | 24 | 16 |
| A2 | 72.41 | 8 | 19 | 23 |
| A3 | 62.32 | 13 | 23 | 20 |
| A4 | 92 | 1 | 10 | 13 |
| A5 | 56.1 | 9 | 14 | 9 |
| A6 | 100 | 0 | 1 | 3 |
| A7 | 65.22 | 4 | 4 | 11 |
| A8 | 60 | 1 | 2 | 1 |
| A9 | 100 | 0 | 3 | 4 |
| A10 | 65.22 | 4 | 8 | 7 |
>TRINITY_DN113343_c0_g1_i1 from sample A1 / Example spliced isoformCGCCGACAGCATTCTAATGCGTTTTCATTTTCGAAAACGGTAAAGGCTCCCACATGCCAAGCCAAATACAGGTCACCCACCAAGGCAGGCAGTGAGGCCCGCGGCTCTGTATTCCTGTGGTTGACTCTGAGGCATGCATGGCGCCATACGCCTCCATTGTTTGGTCAATTGTGACAAAAAGCGAGATGGGATATCGAGGA
AAAAGCTGGGAAAGCAAGTGTCATCCCGATCCGCGAGTACAAAATGGGCCCTCAGGGATGACAACGAAACGAAAAGCCCAAGGAGCAAAAGAGAATTTAGTTCCTGCTGCACTGTCCGACCCACATTCAGATTCAGGCCTTTTTATGAGCAGACGAGCGCTCGTACTTATGTTTTGGGGTGTTCTTCTGATACCCAATTG
GGAAGGAAAGGATTCTGACAAGATACCGAGTGGCATCGAGGGGATCTGAGCACAGGGTATGGCTGACAACGAGCCCTTCATTGCCAAGGCATTTAGTCTTCCTACATCGTGGGTGAACACCAAGGCCCGAGTGCGGAAACATGCACTGAACACCATAGCCACCACAGTGGAGATGTTCACTGGGTTTACCAGAGTGTCCC
AGCATGATTCAGGAGAATTGCCGAGAGTTTTGGTTGGACCCATCATAGGGAAGGTCACCACCTCGAGTGCTCGAGTCCTGGTGGAGATTGATAGAGAGGACGATGTGATTGTCATGGCCTTTGTCGATGCAGAGGGCAACAGCGGGAATGGTGGGGGAACCTCTTTGCTGAGGAGGCTAGGTACCTCAGTCGGTTATTAT
CCACGGATGAGATTGGAGGAGAGCAGCAGCAGCAGCATCAACAACAGAGTGACGGTGGATGCTATTTCCAAAGTTGAGAAGCATCTGCAAGGCAGGAGCCCCACTGTGTTTGAATTAAGGGATCTGATGCCCGGAACTAGGTATGTTGTGGAGGTTCACTGCCCTGATGGGCCGATTCTCGGGGTAGTTCCGAGCAGCTT
CAGGACTTTCCCTGAGGAGGATGCTGAGGTTCTCAATGTTGGGGTCATCAGCTGCAACAAGATTTTTGTCACCCAGAAGGGGATTTCCTCACATTCGGACCTGTGGGCTCATCTTGCCAAAGGAATTGACGCTGGGAAGATAGATCTACTGGTGCATCTGGGAGATCAGATATATGGCGATGGAGATGAAAGATATGATG
CCGAAGCAGGGTGTGACCGTGACAAGTGGTCAAATCGCTTTCGTAGAGCCAAGGAGAAGCTAGGGAATGTGGAGTCAGATGAATGGAATCATTACAAGAATGATGTATGTGAGAGCTACCGTGAGGTATACAGGGAAACTTGGCAACATGCTCCAACAGCCAAAAGCCTAGCAAATTGTTCAAATCTCATGATTTATGAT
GACCATGAGATCAGGGATAATTGGGGAGATATTAAAGATGACTGGGGACAAGGTAGCCTTGATTTCTTTATTGCTCACTGTGCCTGGATTGTAAGCTTGGAGTACCAGAGACAACTGCATGAGGATGTAGATTTCACCAATTTGCAGGCAATCAAAAAGGATTACCACTTCCACGTTGTCAGCAATGTAGGACTGATGTT
CCTAGATATTCGTGGTTCTCGTACTTTTCATCGTGTTCAAGATGACGAGAATCCATATTTGGGCTCTCGGCAATGGAAGGATATTGAGAAATCATTAGGAAAGGGAGGTATCTTTGACAAAGTGAAGATGCTGCTTGTTTGTAGTCCAGCACCTCTAGTCTTCCTTCAACAAGCGATTACCAGCACAGCAGCAAACAGTG
TAAATCGCTTAGAAGACTTCAAAGGACACTGGTCTGTACACCCACATGAGCAATGCCACATGATTGATTGCTTGTATAAGTGGAAGACATCCAAACAACATCGAGATATCCTCATCCTAGGAGGTGATGTACATTGTGGTGGTCATTCAACTATTCAAGTATCTAAAAGTATTGCATTTCACCAATTGACAACAAGTGCT
ATAGCAAATAGGCCGCTGCCTAAGTCAGTGTACTACACCTTACGCTTGGCTGAGCAATTGGGAAGCCTAACAACAATGTATACATTTACACATCACAACTGGACAAGGGCTCGAAACTATGGCATTGTGCAGATCAAGAACCATAGAAGACAGGACAAAGGAGAACCAGATTTTACAGCACAACTTATCAGAGGAAAGTA
TGTTAGTGGGATAAAAATGGGAGTGAAAATAAGCAATCATGAACGACGGAAACAAATCATTTGGTTTAAACTATGTTGTGCAACCAGTTTTTATAGTTCCTTAATACGCACCACAGAAGACAAGAGGAAGCTCACATTTGTAAATTAACTAGTTGTGGTCTTCTCTATACTCCACTTCCCTTCTCTTCATACTAGAAATT
GAATGTAAAGAAGTTTTGTTTTCAACTATATGCATCTCCATGTTTGCAAATGCCAACTCGTTTATCCAAAAACGAAAGACCATATCGAGAATCAAGTAATCTTTCCCCTGGACAAGTGTACCTGTCGTCAGTGTCATGATAAAATTTCAAAATTCAAAGATAATGAAAATGTCCATTCCATTATCCTGGACTGATCAAAC
AACTTGTTGAAGAAATTAGTGCTAAGCAAGTCTGGTGAGTTTTTTTGCCCCCATGATGTAGTTTTTCATTTCAGATATTCTTTTATTCATATCCTTGGCAATAACAATCTTGGACTTCCCAGTTCAGTCAAGCACATACTTGAGCATGCCTGAGATAAATTCAGCATCATTTCTTGTAATTGATAACATTGGGCAGTAAA
ATATAACCCTGAATTTTCACAAGCAAGTGGGTTACCAAAATGTTGACAATTGTATGATGTTAAACATTCTTGCAAGGAATTCC
>TRINITY_DN113343_c0_g1_i3 from sample A1 / Example unspliced isoform:CGCCGACAGCATTCTAATGCGTTTTCATTTTCGAAAACGGTAAAGGCTCCCACATGCCAAGCCAAATACAGGTCACCCACCAAGGCAGGCAGTGAGGCCCGCGGCTCTGTATTCCTGTGGTTGACTCTGAGGCATGCATGGCGCCATACGCCTCCATTGTTTGGTCAATTGTGACAAAAAGCGAGATGGGATATCGAGGA
AAAAGCTGGGAAAGCAAGTGTCATCCCGATCCGCGAGTACAAAATGGGCCCTCAGGGATGACAACGAAACGAAAAGCCCAAGGAGCAAAAGAGAATTTAGTTCCTGCTGCACTGTCCGACCCACATTCAGATTCAGGCCTTTTTATGAGCAGACGgtacagcagcatttacctatataaccatcgaatgattcgatcatt
gcaaacagagtgattgtacttatgttttggattgttcagcagatacccaattggaattgggtccatatcaacatcgaactcttccatcgatatagtgctcgtgcatatgttttgaattgttcgtttggtatccaactgggaattaagttttataaacattgaacgattcgattattgcatacagagcgcttgtacttttg
ttttggattttttgtctgataccaattgggagttagctctctaaacatcgaatgattcgattattgcatgcagAGCGCTCGTACTTATGTTTTGGGGTGTTCTTCTGATACCCAATTGGGAAGGAAAGGATTCTGACAAGATACCGAGTGGCATCGAGGGGATCTGAGCACAGGGTATGGCTGACAACGAGCCCTTCATT
GCCAAGGCATTTAGTCTTCCTACATCGTGGGTGAACACCAAGGCCCGAGTGCGGAAACATGCACTGAACACCATAGCCACCACAGTGGAGATGTTCACTGGGTTTACCAGAGTGTCCCAGCATGATTCAGGAGAATTGCCGAGAGTTTTGGTTGGACCCATCATAGGGAAGGTCACCACCTCGAGTGCTCGAGTCCTGGT
GGAGATTGATAGAGAGGACGATGTGATTGTCATGGCCTTTGTCGATGCAGAGGGCAACAGCGGGAATGGTGGGGGAACCTCTTTGCTGAGGAGGCTAGGTACCTCAGTCGGTTATTATCCACGGATGAGATTGGAGGAGAGCAGCAGCAGCAGCATCAACAACAGAGTGACGGTGGATGCTATTTCCAAAGTTGAGAAGC
ATCTGCAAGGCAGGAGCCCCACTGTGTTTGAATTAAGGGATCTGATGCCCGGAACTAGGTATGTTGTGGAGGTTCACTGCCCTGATGGGCCGATTCTCGGGGTAGTTCCGAGCAGCTTCAGGACTTTCCCTGAGGAGGATGCTGAGGTTCTCAATGTTGGGGTCATCAGCTGCAACAAGATTTTTGTCACCCAGAAGGGG
ATTTCCTCACATTCGGACCTGTGGGCTCATCTTGCCAAAGGAATTGACGCTGGGAAGATAGATCTACTGGTGCATCTGGGAGATCAGATATATGGCGATGGAGATGAAAGATATGATGCCGAAGCAGGGTGTGACCGTGACAAGTGGTCAAATCGCTTTCGTAGAGCCAAGGAGAAGCTAGGGAATGTGGAGTCAGATGA
ATGGAATCATTACAAGAATGATGTATGTGAGAGCTACCGTGAGGTATACAGGGAAACTTGGCAACATGCTCCAACAGCCAAAAGCCTAGCAAATTGTTCAAATCTCATGATTTATGATGACCATGAGATCAGGGATAATTGGGGAGATATTAAAGATGACTGGGGACAAGGTAGCCTTGATTTCTTTATTGCTCACTGTG
CCTGGATTGTAAGCTTGGAGTACCAGAGACAACTGCATGAGGATGTAGATTTCACCAATTTGCAGGCAATCAAAAAGGATTACCACTTCCACGTTGTCAGCAATGTAGGACTGATGTTCCTAGATATTCGTGGTTCTCGTACTTTTCATCGTGTTCAAGATGACGAGAATCCATATTTGGGCTCTCGGCAATGGAAGGAT
ATTGAGAAATCATTAGGAAAGGGAGGTATCTTTGACAAAGTGAAGATGCTGCTTGTTTGTAGTCCAGCACCTCTAGTCTTCCTTCAACAAGCGATTACCAGCACAGCAGCAAACAGTGTAAATCGCTTAGAAGACTTCAAAGGACACTGGTCTGTACACCCACATGAGCAATGCCACATGATTGATTGCTTGTATAAGTG
GAAGACATCCAAACAACATCGAGATATCCTCATCCTAGGAGGTGATGTACATTGTGGTGGTCATTCAACTATTCAAGTATCTAAAAGTATTGCATTTCACCAATTGACAACAAGTGCTATAGCAAATAGGCCGCTGCCTAAGTCAGTGTACTACACCTTACGCTTGGCTGAGCAATTGGGAAGCCTAACAACAATGTATA
CATTTACACATCACAACTGGACAAGGGCTCGAAACTATGGCATTGTGCAGATCAAGAACCATAGAAGACAGGACAAAGGAGAACCAGATTTTACAGCACAACTTATCAGAGGAAAGTATGTTAGTGGGATAAAAATGGGAGTGAAAATAAGCAATCATGAACGACGGAAACAAATCATTTGGTTTAAACTATGTTGTGCA
ACCAGTTTTTATAGTTCCTTAATACGCACCACAGAAGACAAGAGGAAGCTCACATTTGTAAATTAACTAGTTGTGGTCTTCTCTATACTCCACTTCCCTTCTCTTCATACTAGAAATTGAATGTAAAGAAGTTTTGTTTTCAACTATATGCATCTCCATGTTTGCAAATGCCAACTCGTTTATCCAAAAACGAAAGACCA
TATCGAGAATCAAGTAATCTTTCCCCTGGACAAGTGTACCTGTCGTCAGTGTCATGATAAAATTTCAAAATTCAAAGATAATGAAAATGTCCATTCCATTATCCTGGACTGATCAAACAACTTGTTGAAGAAATTAGTGCTAAGCAAGTCTGGTGAGTTTTTTTGCCCCCATGATGTAGTTTTTCATTTCAGATATTCTT
TTATTCATATCCTTGGCAATAACAATCTTGGACTTCCCAGTTCAGTCAAGCACATACTTGAGCATGCCTGAGATAAATTCAGCATCATTTCTTGTAATTGATAACATTGGGCAGTAAAATATAACCCTGAATTTTCACAAGCAAGTGGGTTACCAAAATGTTGACAATTGTATGATGTTAAACATTCTTGCAAGGAATTC
C