sp|Q42521|DCE1_ARATH ----> Glutamate decarboxylase 1
Intron 1 GTAATGGCAG ... TTTGGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.75 | 26.5 | 9 | 18 |
| A2 | 28.8 | 23.5 | 0 | 19 |
| A3 | 33.33 | 13 | 2 | 11 |
| A4 | 27.46 | 37 | 9 | 19 |
| A5 | 44.19 | 12 | 7 | 12 |
| A6 | 42.86 | 56 | 34 | 50 |
| A7 | 40.49 | 48.5 | 28 | 38 |
| A8 | 53.08 | 49.5 | 48 | 64 |
| A9 | 28.25 | 91.5 | 21 | 51 |
| A10 | 31.74 | 57 | 26 | 27 |
>TRINITY_DN40604_c0_g1_i8 from sample A9 / Example spliced isoformTGCTTCTTTGTCACCACATGGATGGAACCAGAATGCGATAAGCTCCGGATGCAGGCAATCAACAAGAATTATGTCGACATGAACGAGTATCCAGTTACCACAGAGTTGCGGAATCGATGTGTGAACATTATAACCAATCTGTTTAATGCCCCCACTCGGCGATGGAGAAGAAGCTGTGGGAGTGGGTACAGTTGGATCTT
CAGAAGCGATCATGTTGCCAGGCCTTGCATTCAAACGCAAATGGAAAAACAAGCGCAAGGCAGAGGGGAAGCCTTATGACAAGCCAAACATTGTTACTGGTGCAAATGTGCTGGTAACTTGAGATTCTACATCTATATAAGTTGATGTGTATAAATTGGATTAGCCCAAATCCATCTAAATGTGCTTTGTATCAATTAAA
TTAGTCAAATTCAT
>TRINITY_DN40604_c0_g1_i9 from sample A9 / Example unspliced isoform:TGCTTCTTTGTCACCACATGGATGGAACCAGAATGCGATAAGCTCCGGATGCAGGCAATCAACAAGAATTATGTCGACATGAACGAGTATCCAGTTACCACAGAGTTGCGGgtaatggcagcccgtgtgataagcttcgtcttctaatctctcaagatcatctgaaagcccctttcaaatctattttagttatttgggca
ttgtttatttagtttgtcttcttttctctattttttattctgaaagtgtgagtgctttgatgtttttggatttggaaaagAATCGATGTGTGAACATTATAACCAATCTGTTTAATGCCCCCACTCGGCGATGGAGAAGAAGCTGTGGGAGTGGGTACAGTTGGATCTTCAGAAGCGATCATGTTGCCAGGCCTTGCATT
CAAACGCAAATGGAAAAACAAGCGCAAGGCAGAGGGGAAGCCTTATGACAAGCCAAACATTGTTACTGGTGCAAATGTGCTGGTAACTTGAGATTCTACATCTATATAAGTTGATGTGTATAAATTGGATTAGCCCAAATCCATCTAAATGTGCTTTGTATCAATTAAATTAGTCAAATTCAT
Intron 2 GTACGTATAA ... GCCTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.34 | 116 | 34 | 36.7 |
| A2 | 20.08 | 69 | 20 | 14.7 |
| A3 | 21.3 | 117 | 19 | 44.3 |
| A4 | 20.53 | 80 | 16 | 25.3 |
| A5 | 19.8 | 56 | 13.7 | 14 |
| A6 | 23.13 | 139 | 44 | 39.7 |
| A7 | 25.08 | 222 | 70.7 | 78 |
| A8 | 22.63 | 98 | 17 | 40.3 |
| A9 | 23.47 | 251 | 57 | 97 |
| A10 | 22.15 | 232 | 52 | 80 |
>TRINITY_DN44869_c1_g2_i4 from sample A6 / Example spliced isoformGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATTAGAATCCCC
GATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCCGGAGAGATC
GATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGATGTGTCAACA
TTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAA
TTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGG
GTGAGTCCAGCAAGTACCCTTAGATTTTTTAGTGCCCTTATAATTTGGGATGGGTTTGATAGAAGAATTCTGTTGAAACAATCCTATTTAGTATTATATCGATCTTAACCCTGGTCATCTAGGATACCCTTTTTCTTGTCTTTTTTCTTGCAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTTAATTTTGTC
TTTTTTCTTACAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTTAATTTTGTCTTTTTTCTTACAGCACATTGTCTCCATTCAATC
>TRINITY_DN44869_c1_g2_i7 from sample A6 / Example unspliced isoform:GGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATTAGAATCCCC
GATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGgtacgtatataattctctgga
gggaaatctagggacaaaccgcacttatcaaagctgatatcatttgatgtgattgatttgaatgtttgtcttggtagGCTTCAAATGCCGGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACC
AGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCAT
TCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACT
ATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAG
CATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGT
TCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCC
GCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACAT
AGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTT
CCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATG
ATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAATTATTTATTCAGAAGATCATTATCTTTGC
Intron 3 GTAACATTAA ... ACAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.14 | 156.5 | 41.2 | 32.4 |
| A2 | 22.61 | 105 | 27.5 | 30.7 |
| A3 | 11.04 | 135 | 38.2 | 16.8 |
| A4 | 19.79 | 125.3 | 32 | 30.9 |
| A5 | 23.16 | 73 | 10.5 | 22 |
| A6 | 19.69 | 298.6 | 68.9 | 73.2 |
| A7 | 16.67 | 345.7 | 95.5 | 69.2 |
| A8 | 19.71 | 222.2 | 59.7 | 54.5 |
| A9 | 18.8 | 575.5 | 153.2 | 133.2 |
| A10 | 16.27 | 429.4 | 116.8 | 83.5 |
>TRINITY_DN110483_c0_g1_i3 from sample A2 / Example spliced isoformGAAGCATTCATTGATCGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGA
AAGCCTATGTCCATTAGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCC
TCGGCTTCAAATGCCGGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAG
AATTGCAGGTAATGACACACTCTGGATATCTTTGGCCTCTTTAGTCTTTCTAGATCTGAAGGCCCTTGGCAGATATGTTTTGGGCATTAATTTTACTTGTATTTCTTGTTTTTCTCAATTTGTTTCATATGTCTGGATTTGGAAAAAGAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGG
GAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTT
AAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGG
CGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCA
CCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAG
GACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAA
GTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAAC
TTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTG
ACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAAAA
>TRINITY_DN110483_c0_g1_i1 from sample A2 / Example unspliced isoform:GAAGCATTCATTGATCGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGA
AAGCCTATGTCCATTAGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCC
TCGGCTTCAAATGCCGGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAG
AATTGCAGAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCA
AATGTGCAGgtaacattaagattatccccctatatagtcgcgttgtatctctagcccaaatccatggatatttttataacaattagattagctcaaaactatcttgattcttgtttgatgtgcacctaaatcttgaagtgagcttaatgaagctcaggttgcacacgtggagttcacaatctgtgctaatagatcaaggg
ctatgtggatctggcctagcgcttaagaatttagttgggtttgccctagtctttagattcaatgcacctaatgctgtagaatgtattgggagaaattgttttgcttagatttgacattcttcttacaattgcagGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGAT
TATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACC
GTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCA
AAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCAC
GACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGT
GACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCA
TTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCT
GTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAAAA
Intron 4 GTGAGTCCAG ... GTCGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.4 | 125.8 | 37 | 28 |
| A2 | 25.54 | 65 | 26 | 16 |
| A3 | 27.31 | 78.5 | 28 | 26 |
| A4 | 16.23 | 68 | 14 | 10 |
| A5 | 21.21 | 52 | 13 | 14 |
| A6 | 24.15 | 288 | 100 | 73 |
| A7 | 22.34 | 387.8 | 126 | 87 |
| A8 | 28.4 | 223.5 | 65 | 97 |
| A9 | 23.01 | 484.8 | 142 | 134 |
| A10 | 26.13 | 449.5 | 158 | 144 |
>TRINITY_DN40604_c0_g1_i12 from sample A9 / Example spliced isoformGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAATTTGC
TCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGG
ACACACCCATACATGTCGACGCGGCGAGCGGCGGATTCATTGCAC
>TRINITY_DN40604_c0_g1_i11 from sample A9 / Example unspliced isoform:GTCACCGGTGCAAATGTGCAGGTAACATTAAGATTATCCCCCTATATAGTCGCGTTGTATCTCTAGCCCAAATCCATGGATATTTTTATAACAATTAGATTAGCTCAAAACTATCTTGATTCTTGTTTGATGTGCACCTAAATCTTGAAGTGAGCTTAATGAAGCTCAGGTTGCACACGTGGAGTTCACAATCTGTGCTA
ATAGATCAAGGGCTATGTGGATCTGGCCTAGCGCTTAAGAATTTAGTTGGGTTTGCCCTAGTCTTTAGATTCAATGCACCTAATGCTGTAGAATGTATTGGGAGAAATTGTTTTGCTTAGATTTGACATTCTTCTTACAATTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAG
CTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGgtgagtccagcaagtacccttagattttttagtgccctt
ataatttgggatgggtttgatagaagaattctgttgaaacaatcctatttagtattatatcgatcttaaccctggtcatctaggataccctttttcttgtcttttttcttgcagcacattgtctccattcaatccggtgggacataaactttaattttgtcttttttcttacagcacattgtctccattcaatccggtgg
gacataaactttaattttgtcttttttcttacagcacattgtctccattcaatcaaacattaacgtggcctggtcgtttccgttgattgtgcgagtcgttgcagGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGT
GAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTC
TGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATC
GTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTGTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAA
AGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTA
TTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTC
GTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAAAAAA
Intron 5 GTGAGTCCAG ... GTCGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.1 | 157.4 | 20.6 | 28 |
| A2 | 16.16 | 83 | 15.3 | 16 |
| A3 | 19.85 | 105 | 16 | 26 |
| A4 | 10 | 90 | 8 | 10 |
| A5 | 18.18 | 63 | 7.4 | 14 |
| A6 | 16.82 | 366 | 59.3 | 74 |
| A7 | 15.48 | 480.4 | 72.3 | 88 |
| A8 | 24.62 | 300 | 37.6 | 98 |
| A9 | 18.27 | 603.9 | 80.4 | 135 |
| A10 | 20.28 | 566 | 91.6 | 144 |
>TRINITY_DN41824_c0_g1_i5 from sample A8 / Example spliced isoformCGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATT
AGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCC
GGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGGTAATGA
CACACTCTGGATATCTTTGGCCTCTTTAGTCTTTCTAGATCTGAAGGCCCTTGGCAGATATGTTTTGGGCATTAATTTTACTTGTATTTCTTGTTTTTCTCAATTTGTTTCATATGTCTGGATTTGGAAAAAGAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTG
GTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTAACATTAAGATTATCCCCCTATATAGTCGCGTTGTATCTCTAGCCCAAATCCATGGATATTTTT
ATAACAATTAGATTAGCTCAAAACTATCTTGATTCTTGTTTGATGTGCACCTAAATCTTGAAGTGAGCTTAATGAAGCTCAGGTTGCACACGTGGAGTTCACAATCTGTGCTAATAGATCAAGGGCTATGTGGATCTGGCCTAGCGCTTAAGAATTTAGTTGGGTTTGCCCTAGTCTTTAGATTCAATGCACCTAATGCT
CTAGAATGTATTGGGAGAAATTGTTTTGCTTAGATTTCACATTCTTCTTACAATTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGT
TCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTA
TGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGA
GCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCA
CAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTC
TCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTT
TTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTC
TCGTGGGTTCTTTTCAAATAAATTATTTATTCAG
>TRINITY_DN41824_c0_g1_i3 from sample A8 / Example unspliced isoform:CGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATT
AGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCC
GGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGAT
GTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGT
TGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAA
GGAAACAGGgtgagtccagcaagtacccttagattttttagtgcccttataatttgggatgggtttgatagaagaattctgttgaaacaatcctatttagtattatatcgatcttaaccctggtcatctaggataccctttttcttgtcttttttcttgcagcacattgtctccattcaatccggtgggacataaacttt
aattttgtcttttttcttacagcacattgtctccattcaatccggtgggacataaactttaattttgtaaacattaacgtggcctggtcgtttccgttgattgtgcgagtcgttgcagGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTC
CGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTA
CCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAA
GGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAA
CTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCAC
TACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAA
ATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAATTATTTATTCAG
Intron 6 GTAATGACAC ... TTGGAAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 129.3 | 32.2 | 43 |
| A2 | 24.68 | 85.7 | 28.9 | 28 |
| A3 | 22.04 | 85 | 18.2 | 24 |
| A4 | 26.16 | 121.5 | 26 | 43 |
| A5 | 22.26 | 63 | 19.9 | 18 |
| A6 | 20.8 | 190.5 | 36.5 | 50 |
| A7 | 18.15 | 257.5 | 58.9 | 57 |
| A8 | 23.44 | 137.2 | 21.8 | 42 |
| A9 | 21.39 | 342.7 | 84.1 | 93 |
| A10 | 14.35 | 352.9 | 80 | 59 |
>TRINITY_DN115867_c0_g5_i3 from sample A1 / Example spliced isoformTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATTAGAATCCCCGATCCACT
TTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCCGGAGAGATCGATCCCTA
AAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGATGTGTCAACATTATAGCC
AATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTAACATTAAGATTATCCCCCTA
TATAGTCGCGTTGTATCTCTAGCCCAAATCCATGGATATTTTTATAACAATTAGATTAGCTCAAAACTATCTTGATTCTTGTTTGATGTGCACCTAAATCTTGAAGTGAGCTTAATGAAGCTCAGGTTGCACACGTGGAGTTCACAATCTGTGCTAATAGATCAAGGGCTATGTGGATCTGGCCTAGCGCTTAAGAATTT
AGTTGGGTTTGCCCTAGTCTTTAGATTCAATGCACCTAATGCTGTAGAATGTATTGGGAGAAATTGTTTTGCTTAGAGTTGACAGTCTT
>TRINITY_DN115867_c0_g5_i2 from sample A1 / Example unspliced isoform:TTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATTAGAATCCCCGATCCACT
TTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCCGGAGAGATCGATCCCTA
AAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGgtaatgacacactctggatatctt
tggcctctttagtctttctagatctgaaggcccttggcagatatgttttgggcattaattttacttgtatttcttgtttttctcaatttgtttcatatgtctggatttggaaaaagAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGA
TCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCC
TGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATT
TGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATA
ATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTC
TCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAG
AAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATG
ACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCAT
GCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGG
Intron 7 GTTTGCTGTC ... GTTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.21 | 112 | 10.1 | 44 |
| A2 | 18.58 | 92 | 11.8 | 21 |
| A3 | 21.31 | 96 | 11.9 | 26 |
| A4 | 31.53 | 76 | 7.6 | 35 |
| A5 | 30.53 | 66 | 5.4 | 29 |
| A6 | 25.92 | 463 | 57.5 | 162 |
| A7 | 25.67 | 469 | 58.2 | 162 |
| A8 | 23.25 | 406 | 60.3 | 123 |
| A9 | 24.36 | 624 | 86.2 | 201 |
| A10 | 26.9 | 595 | 56.9 | 219 |
>TRINITY_DN44869_c1_g2_i2 from sample A6 / Example spliced isoformAGTCCAGCAAGTACCCTTAGATTTTTTAGTGCCCTTATAATTTGGGATGGGTTTGATAGAAGAATTCTGTTGAAACAATCCTATTTAGTATTATATCGATCTTAACCCTGGTCATCTAGGATACCCTTTTTCTTGTCTTTTTTCTTGCAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTTAATTTTGTCTTT
TTTCTTACAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTTAATTTTGTCTTTTTTCTTACAGCACATTGTCTCCATTCAATCAAACATTAACGTGGCCTGGTCGTTTCCGTTGATTGTGCGAGTCGTTGCAGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATA
CCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCA
GCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTAT
GAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTC
TCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTT
TTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCC
GCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAATTATTTATTCAGAAGATCATTATCTTTGC
>TRINITY_DN44869_c1_g2_i1 from sample A6 / Example unspliced isoform:GGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATTAGAATCCCC
GATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCCGGAGAGATC
GATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGATGTGTCAACA
TTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGTTGGGAGAAA
TTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGG
GTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTC
ACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGgtttgctgtcgcctgtcaaacattcattattaatatttcattcagctgtaagccctttcaaattacagtgtgtgacgcgttttaaattgtttg
ttgtttggtcagGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGAT
CGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACA
AAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACT
ATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTT
CGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAATTATTTATTCAGAAGATCATTATCTTTGC
Intron 8 GTAATACTAA ... AACCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 141 | 24.4 | 0 |
| A2 | 3.51 | 110 | 15.4 | 4 |
| A3 | 0 | 123 | 15.4 | 0 |
| A4 | 0.94 | 105 | 19.3 | 1 |
| A5 | 0 | 80 | 12.9 | 0 |
| A6 | 0.18 | 563 | 80.3 | 1 |
| A7 | 0.93 | 638.6 | 97.3 | 6 |
| A8 | 0.59 | 502.6 | 75.9 | 3 |
| A9 | 0.36 | 838 | 124.1 | 3 |
| A10 | 0.56 | 712.6 | 103.6 | 4 |
>TRINITY_DN41824_c0_g1_i5 from sample A8 / Example spliced isoformCGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATT
AGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCC
GGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGGTAATGA
CACACTCTGGATATCTTTGGCCTCTTTAGTCTTTCTAGATCTGAAGGCCCTTGGCAGATATGTTTTGGGCATTAATTTTACTTGTATTTCTTGTTTTTCTCAATTTGTTTCATATGTCTGGATTTGGAAAAAGAATCGATGTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTG
GTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTAACATTAAGATTATCCCCCTATATAGTCGCGTTGTATCTCTAGCCCAAATCCATGGATATTTTT
ATAACAATTAGATTAGCTCAAAACTATCTTGATTCTTGTTTGATGTGCACCTAAATCTTGAAGTGAGCTTAATGAAGCTCAGGTTGCACACGTGGAGTTCACAATCTGTGCTAATAGATCAAGGGCTATGTGGATCTGGCCTAGCGCTTAAGAATTTAGTTGGGTTTGCCCTAGTCTTTAGATTCAATGCACCTAATGCT
CTAGAATGTATTGGGAGAAATTGTTTTGCTTAGATTTCACATTCTTCTTACAATTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGT
TCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAAGGAAACAGGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTCCGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTA
TGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGGCTATCGGAATATCATGA
GCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAGCAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCA
CAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGAGGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTC
TCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGTCTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTT
TTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTACATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTC
TCGTGGGTTCTTTTCAAATAAATTATTTATTCAG
>TRINITY_DN41824_c0_g1_i2 from sample A8 / Example unspliced isoform:CGTAATTAAGGGGAGTGTTAGCATTCATTGACAGTTTTCTTTAACGGTTAGAAGTGTTTCTTGGCAAATCTTCTTGAGCCGACTACTATATATTTCTTGAATAACATGAGGGTTACAGTCTGTGTGAATTCTTGGACCTGATATTCGGTGTGACTGTTGCAACAGTCCAATATTAATTTATTTGAAAGCCTATGTCCATT
AGAATCCCCGATCCACTTTCAATTCTGCAACCGATCACCACAAACATTGTTGTGGAGTAAGATTTCTTTGAAGATCGATCCTTGGACATTAGGATTTCCAACAAAATGGCTCTGAGCAAGGCTACTGATTCGGAAGGCTCCATACATTCAACCTTTGCCTCCAGATATGTTCGAGAATCCCTGCCTCGGCTTCAAATGCC
GGAGAGATCGATCCCTAAAGATGCTGCCTATCAGATCATCAGCGACGAGCTCATGTTGGATGGGAACCCCAGACTTAATCTTGCTTCTTTTGTCAACACGTGGATGGAACCAGAATGTGATAAGCTCATCATGCAGTCAATCAACAAGAATTATGTCGACATGGACGAGTATCCTGTCACTACAGAATTGCAGAATCGAT
GTGTCAACATTATAGCCAATCTGTTTAACGCCCCACTCGGCGAGGGAGAGGAAGCTGTTGGTGTAGGCACGGTTGGATCTTCAGAAGCGATCATGTTGGCAGGCCTTGCATTCAAACGCAAATGGCAGAACAATCGCAAGGCAGAGGGAAAGCCTTATGACAAGCCAAACATTGTCACCGGTGCAAATGTGCAGGTGTGT
TGGGAGAAATTTGCTCGTTATTTTGAAGTGGAGCTTAAAGAAGTTAAGCTCAGGGAGGATTATTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGACGAGAACACTATTTGTGTTGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGTTGAACGATCTCCTCCTGCAGAAAAACAA
GGAAACAGGGTGAGTCCAGCAAGTACCCTTAGATTTTTTAGTGCCCTTATAATTTGGGATGGGTTTGATAGAAGAATTCTGTTGAAACAATCCTATTTAGTATTATATCGATCTTAACCCTGGTCATCTAGGATACCCTTTTTCTTGTCTTTTTTCTTGCAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTT
AATTTTGTCTTTTTTCTTACAGCACATTGTCTCCATTCAATCCGGTGGGACATAAACTTTAATTTTGTAAACATTAACGTGGCCTGGTCGTTTCCGTTGATTGTGCGAGTCGTTGCAGGTGGGACACACCCATACATGTGGATGCGGCGAGCGGCGGATTTATTGCACCGTTCCTATACCCGGATTTGGAATGGGATTTC
CGGCTTCCCTTGGTGAAGAGCATCAACGTGAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATTGGATGGGTTATCTGGAGAGCAAAGCAGGACCTTCCTGAAGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACATTCACCCTCAACTTCTCCAAAGgtaatactaaattttatttaccaaatag
atcttgatgctcctttcaattcagttgttcaataggatataggaaaaaggttatctttggggaaagcatctttgaattaaagccctttaccttgtaaccctgcagGAGCCAGCCAAATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGAGGTTTGCTGTCGCCTGTCAAACATTCATTATTAATATTTCATT
CAGCTGTAAGCCCTTTCAAATTACAGTGTGTGACGCGTTTTAAATTGTTTGTTGTTTGGTCAGGGCTATCGGAATATCATGAGCAACTGCGTGGCAAATGCCAAGACTCTGGCCGACGGCCTGGTGAGGACCGGGCGGTTCAACATCCTGTCGAAAGATGTCGGAGTCCCTGTGGTGGCGTTCTCGCTGAAGGACAATAG
CAAGCACGACGAGTATGAGATCTCTCACCACCTGAGAAGGTACGGTTGGATCGTGCCCGCGTACAACATGGCTCCCGACGCACAGCACGTCACCCTTCTGCGAGTGGTGGTTCGAGAAGATTTCTGTCTCGCGGAACGACTGGTTCGTGACATAGAGAAGGTGTTGCACGAACTTGACTTGCTTCCTCCAAAGTTAGTGA
GGGAAGTGACGGCCTCTCTGGTAGAAAGCCATCCTCAACTCAAAGAAAACAAAGACATAGACGCTGCGAAGTTGAAGTCGTCTCATTTGTTCAATGAGATCCTTAAGTCACAGAGAACCGCAAAAGCATGGAAGAGATATGTTGCGCACAAGCACAATCGTGTGTGCTGAGAGGCATTGAAATGGCTAAAACTTGGAAGT
CTCGTCATTTTTTGTTTTCTTATGACTCTGGCCAGCACTACTACCATTACTATTACTTCCATCCATCTAGTAAACTGTTGTTTTTTCTAGGGCTGAAGTGCTTTCACGCAGTCTCCATTGTTGTTCATGCGTGGCTTTAGTTTCAGATTGGTATCGAATATGCTAGATTTGTCGAAGCCGCGTTCGTTGGTGACTTTCTA
CATATCTGTCGGAGCCGCGTTCATGCTGCCTTTCTGAAATTTTGTATGTTTCGTAATGATAAAATTAATATATTTGGGTCTCTCGTGGGTTCTTTTCAAATAAATTATTTATTCAG