sp|F4K4J0|THO5B_ARATH ----> THO complex subunit 5B
Intron 1 GTTTTCTGTA ... TGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 27 | 0 | 6 |
| A2 | 16.95 | 49 | 2 | 10 |
| A3 | 17.14 | 58 | 0 | 12 |
| A4 | 21.62 | 29 | 1 | 8 |
| A5 | 26.32 | 14 | 0 | 5 |
| A6 | 6.67 | 42 | 0 | 3 |
| A7 | 17.14 | 87 | 0 | 18 |
| A8 | 12.82 | 34 | 0 | 5 |
| A9 | 11.32 | 47 | 0 | 6 |
| A10 | 14 | 43 | 0 | 7 |
>TRINITY_DN118265_c7_g1_i5 from sample A1 / Example spliced isoformCCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGAT
GCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAACT
CATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAAAGCTATTAAGGCGTGTAAAGATTTTAAGTCAAAAT
ATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTAAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGAAAAATCTGCAGGAAACTATTGCA
AATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTGA
TCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATC
AAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCT
CATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACA
ACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAG
TAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTT
CCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGA
GGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTATCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGG
CAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAA
GTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCA
GAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGAT
TTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAGTTTTAGAAGTTATTCTCATTTTCTCCATTTGTAGTTTGAAATGCTTATGTTAACCTTCTCTTTGACAGGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGC
GCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGC
TTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTG
TATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCT
>TRINITY_DN118265_c7_g1_i2 from sample A1 / Example unspliced isoform:AGCAAGCAAACAAAGATACAGgttttctgtaaaattcaattatttgttatatggcttatggtggggaatgcattaatgtttgctttatttttataatgatgtggccttggaatacaaatttcatgcctggatcaaaatgatacattataatgaactcttgtgatttgcagGTGCTTCTACAGGCATCGAGGAAGGCAAAA
TGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATCAAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTA
AAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCTCATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGA
CTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACAACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGT
TGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAA
GATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGT
GGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGG
AGTATCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACAT
GAAGAAAATCAAATTTTAGGACACCAAGTAAGCTTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGA
TAGGCAGAAGACTGCGAAATTAAGTTGATGGTGTATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCT
Intron 2 GTGATTCATT ... ATGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.72 | 67 | 15 | 10 |
| A2 | 21.65 | 38 | 10 | 11 |
| A3 | 14.5 | 56 | 8 | 11 |
| A4 | 16.05 | 34 | 7 | 6 |
| A5 | 18.18 | 18 | 5 | 3 |
| A6 | 8.96 | 61 | 7 | 5 |
| A7 | 12.26 | 93 | 12 | 14 |
| A8 | 7.43 | 81 | 3 | 10 |
| A9 | 11.34 | 86 | 9 | 13 |
| A10 | 13.04 | 90 | 7 | 20 |
>TRINITY_DN99427_c0_g1_i7 from sample A4 / Example spliced isoformGCAAAGTTAAATGATTGTCCAAAATATTATGCTGTCCCCTTATTCTTTTGTAAGAATTTCTTTTAATGGTTACAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAA
AGCTATTAAGGCGTGTAAAGATTTTAAGTCAAAATATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTCAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAG
AGCAGCGTAAGAAAAATCTGCAGGAAACTATTGCAAATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTT
TTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTGATCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCA
GATAAAGGAGAATGTGGATGCAATTGGTTTTTATCAAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAA
ACTTGTTTCCAGATGACACTGGGATTGAGCTTCCTCATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGT
GCATCTACTTTGGCAGGGCTGAATATATATAGACAACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTG
GTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATT
CTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGAT
GTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCC
TGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGCTTTTTAGTATTGCTGTTTGACCTTTACATGGACC
AAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTGTATATCATTTGGGTTATTCTAATGCCCAGGATGT
TTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCTATTGGATATGTTTAGGTTTTATTGGTTTGCTAACTTATATTTCAACAATAGTAAGTTGAGAATTTTGCTACCTATTCTTCTGGAAACTGAAATATTATTTTGGATTTACAATTTGTTTTATGGCATAGAGATGCGAAGAGTTCTTAC
>TRINITY_DN99427_c0_g1_i9 from sample A4 / Example unspliced isoform:CGAAACTATATTTTAAACATTACCCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTA
TGATTCCTCCTGCTAAATGTGATGCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAA
GGACGAGCGGAGCTTCGGGAACTCATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAAAGCTATTAAGGC
GTGTAAAGATTTTAAGTCAAAATATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTCAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGA
AAAATCTGCAGGAAACTATTGCAAATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAG
GAAGCTTTTGAGGAGCCTATTGATCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAA
TGTGGATGCAATTGGTTTTTATCAAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAG
ATGACACTGGGATTGAGCTTCCTCATCAGgtgattcattttttgttcagccttttggaagtttttttttctttttttttcaaacaatgcaaattcatcatacagtttgcctgttttcccattgtgcggatatgaattgtcagacttcaccatggatgtgtgcagATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATAT
GATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACAACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCG
AAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCAC
TTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTAT
GGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGA
AAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAAC
TTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGCTTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGT
ATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTGTATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCTATTGGATATGTTTAGGTTTTATTG
GTTTGCTAACTTATATTTCAACAATAGTAAGTTGAGAATTTTGCTACCTATTCTTCTGGAAACTGAAATATTATTTTGGATTTACAATTTGTTTTATGGCATAGAGATGCGAAGAGTTCTTAC
Intron 3 GTGATTCATT ... ATGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.72 | 67 | 15 | 10 |
| A2 | 21.65 | 38 | 10 | 11 |
| A3 | 14.5 | 56 | 8 | 11 |
| A4 | 16.05 | 34 | 7 | 6 |
| A5 | 18.18 | 18 | 5 | 3 |
| A6 | 8.96 | 61 | 7 | 5 |
| A7 | 12.26 | 93 | 12 | 14 |
| A8 | 7.43 | 81 | 3 | 10 |
| A9 | 11.34 | 86 | 9 | 13 |
| A10 | 13.04 | 90 | 7 | 20 |
>TRINITY_DN118265_c7_g1_i2 from sample A1 / Example spliced isoformAGCAAGCAAACAAAGATACAGGTTTTCTGTAAAATTCAATTATTTGTTATATGGCTTATGGTGGGGAATGCATTAATGTTTGCTTTATTTTTATAATGATGTGGCCTTGGAATACAAATTTCATGCCTGGATCAAAATGATACATTATAATGAACTCTTGTGATTTGCAGGTGCTTCTACAGGCATCGAGGAAGGCAAAA
TGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATCAAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTA
AAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCTCATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGA
CTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACAACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGT
TGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAA
GATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGT
GGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGG
AGTATCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACAT
GAAGAAAATCAAATTTTAGGACACCAAGTAAGCTTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGA
TAGGCAGAAGACTGCGAAATTAAGTTGATGGTGTATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCT
>TRINITY_DN118265_c7_g1_i4 from sample A1 / Example unspliced isoform:CCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGAT
GCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAACT
CATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAAAGCTATTAAGGCGTGTAAAGATTTTAAGTCAAAAT
ATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTAAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGAAAAATCTGCAGGAAACTATTGCA
AATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTGA
TCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATC
AAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCT
CATCAGgtgattcattttttgttcagccttttggaagttttttttttctttttttttttcaaacaatgcaaattcatcatacagtttgcctgttttcccattgtgcggatatgaattgtcagacttcaccatggatgtgtgcagATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAG
GCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACAACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTC
TTAAGTGAGTCATCACCACTGTGAGCACTTGACGGACGAGCTTTATCTCAAGCCCGAATACTTTTTTGCATTCTTCTCTTGTTTCAATGGATATGAGTAGGGCTATTCCTGTAAATGTTTCTATGTTTAGATTGTGAATAATGTTGATGCTATTCTTGCATGATTCTTTTAACTATTTATGTAGGATACATTCTTATTTT
TGAATCTTTATCCTAAATTAATTAAATAATGAATTTTCTGTGGTGTAATGGTCACATATGTCTTGACATTTTTTTGAGAAGTACCTCTTATAGAATCTCTTTGGCTAAGCTGCTGTTCTATGATGGGCATATCTATGCCAACAAAAACCACCCATAACTTGCCCCTGGCCTCATCTATAC
Intron 4 GTAAGTTTTA ... TCTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.35 | 40.7 | 11.4 | 13.1 |
| A2 | 23.08 | 30 | 5 | 9 |
| A3 | 23.81 | 32 | 5.3 | 10 |
| A4 | 21.88 | 25 | 3.1 | 7 |
| A5 | 31.82 | 15 | 2.4 | 7 |
| A6 | 17.23 | 115.3 | 17.1 | 24 |
| A7 | 18.53 | 165.9 | 31 | 37.7 |
| A8 | 21.6 | 155 | 14.3 | 42.7 |
| A9 | 19.37 | 139 | 24.9 | 33.4 |
| A10 | 11.21 | 118.9 | 11.4 | 15 |
>TRINITY_DN118265_c7_g1_i5 from sample A1 / Example spliced isoformCCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGAT
GCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAACT
CATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAAAGCTATTAAGGCGTGTAAAGATTTTAAGTCAAAAT
ATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTAAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGAAAAATCTGCAGGAAACTATTGCA
AATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTGA
TCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATC
AAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCT
CATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACA
ACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAG
TAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTT
CCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGA
GGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTATCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGG
CAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAA
GTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCA
GAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGAT
TTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAGTTTTAGAAGTTATTCTCATTTTCTCCATTTGTAGTTTGAAATGCTTATGTTAACCTTCTCTTTGACAGGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGC
GCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGC
TTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTG
TATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCT
>TRINITY_DN118265_c7_g1_i5 from sample A1 / Example unspliced isoform:CCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGAT
GCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAACT
CATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGGTAAATCGTGTTATCCTTCAAGAAGAAGATTGTGTAAAATCTGAAACTGAAAATGCAAAGATACCTGTAGATCATACAACTCTACAGCTTCACAATTTGATGTATGAGAAAAATCACTATTTGAAAGCTATTAAGGCGTGTAAAGATTTTAAGTCAAAAT
ATCCAGATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTAAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGAAAAATCTGCAGGAAACTATTGCA
AATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTGA
TCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTATC
AAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCCT
CATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGACA
ACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAG
TAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTT
CCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGA
GGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTATCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGG
CAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCAGTAAA
GTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGTTCCCA
GAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGGAGGAT
TTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGgtaagttttagaagttattctcattttctccatttgtagtttgaaatgcttatgttaaccttctctttgacagGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGC
GCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGGGCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGC
TTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCACTGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTG
TATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGCATTGAATGTATCATCCGCT
Intron 5 GTAAATCGTG ... AAATATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.79 | 14 | 33 | 71 |
| A2 | 77.57 | 10 | 20 | 49.2 |
| A3 | 73.02 | 17 | 30 | 62 |
| A4 | 69.01 | 22 | 55 | 43 |
| A5 | 73.53 | 9 | 35 | 15 |
| A6 | 80 | 2 | 9 | 7 |
| A7 | 75.9 | 10 | 32 | 31 |
| A8 | 70.83 | 7 | 15 | 19 |
| A9 | 74.42 | 11 | 32 | 32 |
| A10 | 83.78 | 9 | 35 | 58 |
>TRINITY_DN109443_c9_g1_i13 from sample A3 / Example spliced isoformACCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGA
TGCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAAC
TCATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGATATAGAGCTTGTCCCGGG
>TRINITY_DN109443_c9_g1_i2 from sample A3 / Example unspliced isoform:ACCGGGCTCCTTGTTAACATAGTGTACAAACCCCTTGATCTCATATGAAATGCTAAACTAACACTGAGAAACCCTCCAACGAAAACAACTTCCACCTTGCCGGGAGCTTGGCTCCTGACGTTTGTTTCTCATTGGCCAGCGAAAATGCTATCTGAATCCATTATTTCTTAGCATGGTATGATTCCTCCTGCTAAATGTGA
TGCCTGGTAGAGCGTTTATTGTTATTCTTGAAGTCTAAGATTTGTGGGTCTCAATCTGCACCGGGTCATCAAAATGGCGAAGATGGCATACGATTTGCTGGAGGAGACCAGAATTTCCACCGAGGAGATTCTGGCGAGAATGCTTTTCATCAAAAAAGAAGGCAAAAGAGAACCCAAAGGACGAGCGGAGCTTCGGGAAC
TCATCACACAGATCTCTGTCCTATTTATTAGCCTTCGTCAGgtaaatcgtgttatccttcaagaagaagattgtgtaaaatctgaaactgaaaatgcaaagatacctgtagatcatacaactctacagcttcacaatttgatgtatgagaaaaatcactatttgaaagctattaaggcgtgtaaagattttaagtcaaaa
tatccagATATAGAGCTTGTCCCGGAGGAAGAATTTTTCAGGGATGCACCAGAGGAGCTTAAGGGAGATCCTTTATTGAAGGAAGACCCACACAAGAGAATGTTACATAGACTAAACTTTGAGCTTTTCCAGAGAAAGGAGCTCTGTAAACAGCGAGAAGAGTTAGAGCAGCGTAAGAAAAATCTGCAGGAAACTATTGC
AAATCGTAAAAAGTTTATCTCAAGTCTTCCTTCGCATTTGAAATCTCTTAAGAAGGCATCATTACCAGTGCAACAACAACTGGGGATTCTTCATACAAAACGTACAAAGCAACACCAATTGGCAGAACTACTGCCAGCCCCACTTTATATTCTATACTCTCAGCTTTTAGCACAAAAGGAAGCTTTTGAGGAGCCTATTG
ATCTTGAAATTGTGGGAAGTACAAAGGATGCCCAATCTTTTTTTCGCCAGCAAGCAAACAAAGATACAGGTGCTTCTACAGGCATCGAGGAAGGCAAAATGGATGATGATGTGCCTGAAGAAGAGGATGATTCCCAGAGACGGAGAAAAAGGCCTAAAAAGGTGCAGATAAAGGAGAATGTGGATGCAATTGGTTTTTAT
CAAGTTCACCCTCTTTCTGTTACTCTTCATGTCTATGATGAACTGACTAATGGGACAAAGCCTAGCAAATTGGTCACTCTGAAATTTGAATACTTGGTAAAGCTGCATGCTGTTTGTGTTGGGGTTGATGGTGTGCAAGGAGGCAGTGAGAACAATTTTCTTATAAACTTGTTTCCAGATGACACTGGGATTGAGCTTCC
TCATCAGATAGCTAAACTCTCTGCAGGTGTCAACTTTGCATATGATCAGAAAAGAGCACAAAGGCCATTTAAATGGGCTCAGCACTTGGCAGGCATTGACTTTTTGCCTGAAGCTCCTCCATTTCTTGCTGATAACATATCTGGAAACGACGATGCTGCAAAAGGTGCATCTACTTTGGCAGGGCTGAATATATATAGAC
AACAACATCGTGTACAAACCATTTTGGAGAGAATCCGTGCTCGAAGGAAGTCTCAGCTGGCTCTTAAGGAGCAACTTGACTCATTAGCAAAACTCAGGTTGCCACCTTTAACATTCAGAAATGTGCCATGGGCAATTTACAACTCAAAATGCAGTTTGCACAGTTGGTCTTCAGTGGAAGTTGGACATAATCAGATTTCA
GTAAAGTCTGTTGCTGGAGAAGAGCCAGGGACTGATATATCACTTGTTTTGGATGGAGAGGGTGGTTCCCTAAAAGCAGAATTAGAGAGCATGAGGGAAGATGGGGAGCTTCCATCAGGAACACATCCTTCAACTACGTTGATGAAAGATTCTGATTTTGAGAATTCTAGCCGTCTCACTTTCACTTCAAAAAATGCTGT
TCCCAGAAAAGGGAAGTCCGAACAACATAAAGGATTTATTTATGGTAGCTTAGATGTTGGAGACAGTTTAGGTGAAGCTTTTGGGGAAGATCTAGCAGTGGCAATGCTGACTGACCTTGATGAGATTGAATCAGCACAGACAGAATTGGAAGCCGATTCTGCAGATGTTAGATGTGGCAGTAAAGTTGGAAAAGCTTGGG
AGGATTTTGCGGTCAGAGAGTTCTGTCTAATATACAGGAGAGAAAATGGTCCTTGTCAGAAAGCAGTTGAGTTAGAAGCAAAGGTAAAAGTAAGCATGGAGTACCCTCTCAGGCCACCCATTTTTTCCTTGCGCTTGTCTTCTGATAACTTGAAACCATCTCTTCCTGATACAAAGGCAGGCATACTTGATCTATCTGGG
GCAGCAGTCCCTGAAACTTCCAGTTGTGAATGGTATAATGAACTTCGGGCCATGGAAGCTGAGGTCAATCTCCACATTCTAAAGGCTTTACCTCAACATGAAGAAAATCAAATTTTAGGACACCAAGTAAGCTTTTTAGTATTGCTGTTTGACCTTTACATGGACCAAGAATTATCTTGCTCTGAAGTTCAAAAGGGCAC
TGCAGTGATTGATGTGGGATTATCTGAGCCAGTGAGTGGAAGTATCCTATCAAGATCGATTAGGGGAAGAGATAGGAGGAGGATGATTTCATGGAATGATAGGCAGAAGACTGCGAAATTAAGTTGATGGTGTATATCATTTGGGTTATTCTAATGCCCAGGATGTTTAACAGAGCTTCATCCTGGTCCTTTCGATTAGC
ATTGAATGTATCATCCGCTATTGGATATGTTTAGGTTTTATTGGTTTGCTAACTTATATTTCAACAATAGTAAGTTGAGAATTTTGCTACCTATTCTTCTGGAAACTGAAATATTATTTTGGATTTACAATTTGTTTTATGGCATAGAG