sp|P49689|RS30_ARATH ----> Small ribosomal subunit protein eS30z/eS30y/eS30x

Intron 1 GTATGCTACA ... GATCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.97	326	114	59
A2	23.06	292	136	39
A3	24.2	343	179	40
A4	23.16	204	95	28
A5	20.68	188	87	11
A6	20.73	5707	2153	831
A7	21.26	3796	1468	582
A8	21.57	5079	1896	897
A9	21.16	4880	1759	860
A10	21.54	2938	1220	393

>TRINITY_DN116827_c0_g4_i1 from sample A1 / Example spliced isoform

TAAAAATTGAAGAAAAGCCACACACGGTCCAAATCCTAAAGCTAAAATCCTTACCCTAAAACCACAGTATAAAGATAAACCCTAATCAGCCGAAGTTTTACTTTTCAATTTGGTTGTGGCGTTGCAAGAGTCTCGGCTAATCGAAGGATATTCAGATTGTATCCCAGCATAGAAACCGCTGCATCACAATGAGTAAGGTT
CATGGGTCCCTTGCCCGAGCAGGGAAAGTGAGAGGGCAGACGCCCAAGGTGGCGAAGCAAGACAAGAAGAAGAAGCCTAGAGGCCGTGCCCACAAGCGAATGCAATACAACCGCCGGTTTGTCACCGCAGTGCTTACTTTTGGAAAGAAGAGAGGGCCAAACTCCTCTGAGAAATAAATGACTAGGTGCAATGGCAGGAG
GGAAGGCGTCAGGTGTTGAAAGGTCATCTCTTTTGGGGATGTCTAGTTTTCGGATTTTTGAGGGTATTTAATTTGTTATTGATAAACAATCATGTAATTTTGTTGAGGTTGGATCCGAGAAGAAAATTGTTATGGATTTGTACTGTGTAAATGTTTAATTTGAATGATCGTATGGTATAGTCTTGTTTGTGTCTTGGGCT
ATTTATATATTCTCATTGCATCGAAACTTATGAATCAATCTGTGATGCAAAATATAGCCAGAAATATTAGTTTCATGAATGGGAATGCATTAATATCACCATCAACTCAAACAATTAGGAACCAGAAATATTAGTTTCATGAATGGGAAAGCATTATGCGAGAAATTTGCAGTCATCCATTGAATGTATGAGAATGAAAT
CTATGGCCTTTATGTTACGACAATGCAATCTATGGTTTAATATCATTTCTATGGTTTTCTACGAGTATCCATTTCAGATCACGGGTTGGTGGCAATCTCTATATGATGATAAGCAATTACCACAAGCTATTATTACAGCGGCATATCTTTTGTGAGATTTTGTTC

>TRINITY_DN116827_c0_g4_i2 from sample A1 / Example unspliced isoform:

TAAAAATTGAAGAAAAGCCACACACGGTCCAAATCCTAAAGCTAAAATCCTTACCCTAAAACCACAGTATAAAGATAAACCCTAATCAGCCGAAGTTTTACTTTTCAATTTGGTTGTGGCGTTGCAAGAGTCTCGGCTAATCGAAGGATATTCAGATTGTATCCCAGCATAGAAACCGCTGCATCACAATGAGTAAGGTT
CATGGGTCCCTTGCCCGAGCAGGGAAAGTGAGAGGGCAGACGCCCAAGGTGGCGAAGCAAGACAAGAAGAAGAAGCCTAGAGGCCGTGCCCACAAGCGAATGCAATACAACCGCCGGTTTGTCACCGCAGTGCTTACTTTTGGAAAGAAGAGAGGGCCAAACTCCTCTGAGAAATAAATGACTAGgtatgctacagactg
gttttaatattttctctattcttctcctgttccactgttaattatacattttgtattgatctttcagGTGCAATGGCAGGAGGGAAGGCGTCAGGTGTTGAAAGGTCATCTCTTTTGGGGATGTCTAGTTTTCGGATTTTTGAGGGTATTTAATTTGTTATTGATAAACAATCATGTAATTTTGTTGAGGTTGGATCCGA
GAAGAAAATTGTTATGGATTTGTACTGTGTAAATGTTTAATTTGAATGATCGTATGGTATAGTCTTGTTTGTGTCTTGGGCTATTTATATATTCTCATTGCATCGAAACTTATGAATCAATCTGTGATGCAAAATATAGCCAGAAATATTAGTTTCATGAATGGGAATGCATTAATATCACCATCAACTCAAACAATTAG
GAACCAGAAATATTAGTTTCATGAATGGGAAAGCATTATGCGAGAAATTTGCAGTCATCCATTGAATGTATGAGAATGAAATCTATGGCCTTTATGTTACGACAATGCAATCTATGGTTTAATATCATTTCTATGGTTTTCTACGAGTATCCATTTCAGATCACGGGTTGGTGGCAATCTCTATATGATGATAAGCAATT
ACCACAAGCTATTATTACAGCGGCATATCTTTTGTGAGATTTTGTTC

Intron 2 GTATGCTATA ... GATCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.62	333	103	2
A2	30.86	289	129	5
A3	32.73	370	180	0
A4	30.31	200	87	0
A5	29.51	203	85	0
A6	25.48	6314	2159	2
A7	26.52	3978	1436	1
A8	26.92	5075	1869	1
A9	26.52	4850	1750	0
A10	28.65	2906	1167	1

>TRINITY_DN109118_c0_g1_i4 from sample A2 / Example spliced isoform

GTTCAAGGTAGCCATTTTTTATTGAATTAAAAAAAACACAAAACCCTAAAGCTCAAATCCTTACACTAAAACCACAGTATAAATCCAAACCCTAATCGGCCGAAGTCTTACTTTGCAATTCAGTATTGGCGTTGAAAGAGCTCGGCTAATCGAAGGAGATTCAGATTGTATCCAAGCATTGAAATCGCTACATCACAATG
AGTAAGGTTCACGGTTCCCTTGCCCGAGCAGGGAAAGTGAGAGGGCAGACGCCCAAGGTGGCGAAGCAAGACAAGAAGAAGAAGCCTAGAGGCCGTGCTCACAAGCGAATGCAATACAACCGCCGGTTTGTCACCGCTGTGGCTACTTTTGGAAAGAAGAGAGGGCCAAACTCCTCTGAGAAATAAATGACTAGGCCCAA

TGGCAGGAGAGAAGGCATCCGGTTTTGAAAGGTCATCTTTTTTGGGGATGTCTCTATTTAACTTTGGAATTTTTTGTTGGTAGTTAACAATCATGAATCATGTAATTTTGTTTAGGTTTGAACATAGAAGAAAATCGTTATCGATTTGTACTCTTCAAAATGTTTAATTTGATGATCATATGATATAATCCGCTGTGTCT
TGGGCTATTTATATTTTCTCATTGCATTAAAACTTATGGATGAATCTGTGATGCAAAACATAGCCAGAAATATCACATAGTTCCATGCTGTCTGTAGTAAAATTCGGTAGATTCATGAATTGGAATGCTTAATATCACCATGACCTTCATATTTGTTTATGATAAGAATGCATTAATATCACCATCACCTTCAAAACAAT
TAGTAAACTATGTATATGGAAGTATAATGTGAGAAATTTGCAGTCATGGAATGACCCTTAATGTATGAGATTGAAATATATGGCCTTTGCATTATGACAATGCAGTCTAGTCTGTTATTCCTGCTGCTTGGTTTTAAAAATAAAACAAGGGTTAGTTCTGCACTTCTAATACTGGTTATTTTCCATTGCTTGTGATGTAT
GAATAATTTGTTTCATTTACTGTTCTGTCTTAAAAGCACTCTTATACTGCTTATTTATCTATTCTTGAAATGTTGTATAAATGATTTGTATAAAATATAGTGAATGTAAGCTTATCTGAATAAA

>TRINITY_DN109118_c0_g1_i3 from sample A2 / Example unspliced isoform:

GTTCAAGGTAGCCATTTTTTATTGAATTAAAAAAAACACAAAACCCTAAAGCTCAAATCCTTACACTAAAACCACAGTATAAATCCAAACCCTAATCGGCCGAAGTCTTACTTTGCAATTCAGTATTGGCGTTGAAAGAGCTCGGCTAATCGAAGGAGATTCAGATTGTATCCAAGCATTGAAATCGCTACATCACAATG
AGTAAGGTTCACGGTTCCCTTGCCCGAGCAGGGAAAGTGAGAGGGCAGACGCCCAAGGTGGCGAAGCAAGACAAGAAGAAGAAGCCTAGAGGCCGTGCTCACAAGCGAATGCAATACAACCGCCGGTTTGTCACCGCTGTGGCTACTTTTGGAAAGAAGAGAGGGCCAAACTCCTCTGAGAAATAAATGACTAGgtatgc
tatagagcgattttaatatttttttaatcttctcctgttccactgttaattatacgttttatattgatctttcagGCCCAATGGCAGGAG