NA ----> NA
Intron 1 GTAAGATAGA ... CTTGTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.62 | 2 | 10 | 12 |
| A2 | 70.21 | 14 | 24 | 42 |
| A3 | 77.78 | 11 | 31 | 46 |
| A4 | 60 | 5 | 6 | 9 |
| A5 | 75 | 2 | 8 | 4 |
| A6 | 54.29 | 8 | 8 | 11 |
| A7 | 77.27 | 10 | 26 | 42 |
| A8 | 84.62 | 2 | 6 | 16 |
| A9 | 78.72 | 5 | 13 | 24 |
| A10 | 85.51 | 5 | 26 | 33 |
>TRINITY_DN95196_c0_g1_i3 from sample A4 / Example spliced isoformTTTTAACCATAGGAACGGGATTTGCCCTTCCAAGAACATAAATTTGATCTGTTTGCCAGTAGAGAAATCATCATAGTACAACCCAGCCCGGCAAAGATTTTCCTTTGTCCAACGAACTACCTTCACCCAACTTTTAAGTAATATCTGAGCGAGAAATCCTTGAAGTTCCGCTGTAAAGTGCAGATAAAAATATGGATATG
AAAGAAAAAGGAAAAGATGAGCAAAAGATGCGCCTCCTGTAACAACTTCAAAGGTGTCGCAGACCATTAAACCTGTGTGAAGAGATCTCAGGGGTCGTCAGGCATTGAAGAAGAACAGGACATAATCAGATGGAGTCGTCGTCCGCCATGGACATGGGGCAGATGCTGCTGACGGCCTTTGACACGAGCATGTCCAAATA
CTGGCGTGAAGAGGACCGCAGATGGAGGGCAGAGGACAGAATATGGAGGGAAGATGACCTCAATTATCGCGAGGAGGAGCGCCAATGGAGAGTTCAGGAAAAGTTCATGCAGGAAGCCGAGATCAAATGGAGGCGGGAGGATATGGAACAAAGGCATGTTGAAAATGCTCGATATCTTTGGACAAGGTTTGTGGAAAAAA
ATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGCTATCTCCAACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGCAAAATGCGGTGTCTATTATTTGGATTGCATTCTATGGCGTTTTTACAGCTATTGCAGTTGGATTGATGACAATTGCAATGGTTACCTGCACG
TTAATTCTTGGCAGTATTTTAAAAAATGGGAAATCCTATGTGAATGAAGTAGCAGAAGAAGACTTCATGTTCAAGTGTCACACATTTGTAGAATCTTATCAGATTGGTGACCGCCCCCCATTTCCCAGGAGGACCTTTGAGAACTTTTGGGACATAAGGTGTGAAGAAGATTGGAGGCGTGCTTTCCAGCTGTATGCTTT
AGGTGTTTTGTCATTCCTCATCAGCCTAATTCCTATTGGGTGGATCAAGTTTTATTACTCTCCGCTCACAGCATATATTTTTATTGGAGTTATTGTTGTTTCCATTATTGCTTGGCTTCTTGTACAGTACTTCTGGGGTGGTTATTTAAGTAGTAGCTCTAGTAAGAGGAATGAAGTTTTGGCAGAAAGCGTGCAACCTG
TCGGCTTGCCCTTTGATTGGCATCTTGTTCCTGGAGTTCCCCCATCCCAGCAGAGGCAAAGCTGAAATTGGTTATGTACATTAGATTAAAAGCCTTTGGTCGTTACAATTGAAGAATGTATTCCAAAGTCATAACCAAGAAACTGGAAAAAAGCAAGTGATTGTAGCAATAGATTTATAAAAGAAGTAATCATTTGCACA
ATGAGGTATGCATTTGCTGATGTAGACTAATTTAGCTAGCACTGCTCATTTTTCCTTGGTATATTTTAGACGAAAACCCTTCAATGGAGGGGTTTACTATAATGATATGCTCAATGTTGAATAGATGGAAGTTTGAGCATAGTACTTACACAACA
>TRINITY_DN95196_c0_g1_i6 from sample A4 / Example unspliced isoform:TTTTAACCATAGGAACGGGATTTGCCCTTCCAAGAACATAAATTTGATCTGTTTGCCAGTAGAGAAATCATCATAGTACAACCCAGCCCGGCAAAGATTTTCCTTTGTCCAACGAACTACCTTCACCCAACTTTTAAGTAATATCTGAGCGAGAAATCCTTGAAGTTCCGCTGTAAAGTGCAGATAAAAATATGGATATG
AAAGAAAAAGGAAAAGATGAGCAAAAGATGCGCCTCCTGTAACAACTTCAAAGGTGTCGCAGACCATTAAACCTGTGTGAAGAGATCTCAGGGGgtaagatagaagttgcagagaactaaacaaataattgtgagcacgaatgaatgaataaaggttgacgatatctgcacatgtatgcttgtcatagTCGTCAGGCATT
GAAGAAGAACAGGACATAATCAGATGGAGTCGTCGTCCGCCATGGACATGGGGCAGATGCTGCTGACGGCCTTTGACACGAGCATGTCCAAATACTGGCGTGAAGAGGACCGCAGATGGAGGGCAGAGGACAGAATATGGAGGGAAGATGACCTCAATTATCGCGAGGAGGAGCGCCAATGGAGAGTTCAGGAAAAGTTC
ATGCAGGAAGCCGAGATCAATGAGTGCAGAGGATTGTGCCAGTGTAGTTTTGAGCAGGACATGCGCTGACAGGATGGACTGATGAATTTGACGTGGTGCAGGCACAACAGCTAGATTTGACCATGTCAAGCAGAAATGTAGACAAGGCAAG
Intron 2 GTTGGATTGA ... GGGACATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 1 | 5 | 3 |
| A2 | 76.47 | 2 | 9 | 4 |
| A3 | 83.33 | 2 | 9 | 11 |
| A4 | 100 | 0 | 4 | 5 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 81.48 | 5 | 15 | 29 |
| A7 | 80.65 | 3 | 17 | 8 |
| A8 | 75.76 | 4 | 9 | 16 |
| A9 | 66.04 | 9 | 10 | 25 |
| A10 | 76 | 3 | 11 | 8 |
>TRINITY_DN42986_c0_g1_i1 from sample A7 / Example spliced isoformGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGCTATCTCCAACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGAAAATGCTCGATATCTTTGGACAAGGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGC
TATCTCCAACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGCAAAATGCGGTGTCTATTATTTGGATTGCATTCTATGGCGTTTTTACAGCTATTGCAGTGTGAAGAAGATTGGAGGCGTGCTTTCCAGCTGTATGCTTTAGGTGTTTTGTCATTCCTCATCAGCCTAATTCCT
ATTGGGTGGATCAAGTTTTATTACTCTCCGCTCACAGCATATATTTTTATTGGAGTTATTGTTGTTTCCATTATTGCTTGGTAAGATTCTATGCGTAGAGTAGCACTAAGATGCAGTTGTAAATTTACCTTTTTTATTTTGAACTTTTTCTTAGAATTTGGTGAAACTATAAATCGCAAAAGATGGTGCCAAAAAAACAT
TTTTTTGTTTGTTTAGACCATCATTAAAAATTTTACATTTGACTTAGAATAGGTCCTTTTTAC
>TRINITY_DN42986_c0_g1_i4 from sample A7 / Example unspliced isoform:TCGCCACATCGCAAATAAAAAGTTATACGACGAGGGAACTTTGACAACCATCTATAATTTTTTAACCATAGGAACGGGATTTGCCCTTCCAAGAACATAAATTTGATCTGTTTGCCAGTAGAGAAATCATCATAGTACAACCCAGCCCGGCAAAGATTTTCCTTTGTCCAACGAACTACCTTCACCCAACTTTTAAGTAA
TATCTGAGCGAGAAATCCTTGAAGTTCCGCTGTAAAGTGCAGATAAAAATATGGATATGAAAGAAAAAGGAAAAGATGAGCAAAAGATGCGCCTCCTGTAACAACTTCAAAGGTGTCGCAGACCATTAAACCTGTGTGAAGAGATCTCAGGGGGTAAGATAGAAGTTGCAGAGAACTAAACAAATAATTGTGAGCACGAA
TGAATGAATAAAGGTTGACGATATCTGCACATGTATGCTTGTCATAGTCGTCAGGCATTGAAGAAGAACAGGACATAATCAGATGGAGTCGTCGTCCGCCATGGACATGGGGCAGATGCTGCTGACGGCCTTTGACACGAGCATGTCCAAATACTGGCGTGAAGAGGACCGCAGATGGAGGGCAGAGGACAGAATATGGA
GGGAAGATGACCTCAATTATCGCGAGGAGGAGCGCCAATGGAGAGTTCAGGAAAAGTTCATGCAGGAAGCCGAGATCAAATGGAGGCGGGAGGATATGGAACAAAGGCATGTTGAAAATGCTCGATATCTTTGGACAAGGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGCTATCTCC
AACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGCAAAATGCGGTGTCTATTATTTGGATTGCATTCTATGGCGTTTTTACAGCTATTGCAgttggattgatgacaattgcaatggttacctgcacgttaattcttggcagtattttaaaaaatgggaaatcctatgtgaatga
agtagcagaagaagacttcatgttcaagtgtcacacatttgtagaatcttatcagattggtgaccgccccccatttcccaggaggacctttgagaacttttgggacataagGTGTGAAGAAGATTGGAGGCGTGCTTTCCAGCTGTATGCTTTAGGTGTTTTGTCATTCCTCATCAGCCTAATTCCTATTGGGTGGATCA
AGTTTTATTACTCTCCGCTCACAGCATATATTTTTATTGGAGTTATTGTTGTTTCCATTATTGCTTGGCTTCTTGTACAGTACTTCTGGGGTGGTTATTTAAGTAGTAGCTCTAGTAAGAGGAATGAAGTTTTGGCAGAAAGCGTGCAACCTGTCGGCTTGCCCTTTGATTGGCATCTTGTTCCTGGAGTTCCCCCATCC
CAGCAGAGGCAAAGCTGAAATTGGTTATGTACATTAGATTAAAAGCCTTTGGTCGTTACAATTGAAGAATGTATTCCAAAGTCATAACCAAGAAACTGGAAAAAAGCAAGTGATTGTAGCAATAGATTTATAAAAGAAGTAATCATTTGCACAATGAGGTATGCATTTGCTGATGTAGACTAATTTAGCTAGCACTGCTC
ATTTTTCCTTGGTATATTTTAGACGAAAACCCTTCAATGGAGGGGTTTACTATAATGATATGCTCAATGTTGAATAGATGGAAGTTTGAGCATAGTACTTACACAACTAAACTTCAAGAATATCTACAGAATTAAGGAATTTACAAGTTTCCAAGGGGCATCATCACTACGTGCGATTACATTATCCAGTAGCTGAATAG
ACGATGGTAGACACCCCAGCACAAACATCCTAAAAGTAGCTAGCCTGGATAATTACTGCTGTCCTTCTAAATGCAGGATCCAAATATGGTCGGCCTTGTTTGATTACTGCAAGTGTTACTGTGTAGCGAGGATGGAATTTGAGACTTTTATTAGGAAAATTCTTCTCTTTGCCCATTAGACCACAAGTTCATATCCAAGA
GGAATATTGCAATGATAAATGTGATTGTAGAATTATTGTGCGGATTAGTACAATCTTGGTGCATTGGCCAAAAGAGGACAATCATCAATGAGATTAAACAAAGAAACCTAGCAATAAACAAGATGGCTATAAAGTGTGTCACTCTAATA
Intron 3 GTGAGTGCGA ... GGGACATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 3.5 | 3 |
| A2 | 66.67 | 2 | 3.5 | 4 |
| A3 | 84.62 | 2 | 5 | 11 |
| A4 | 100 | 0 | 2 | 5 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 85.29 | 5 | 9 | 29 |
| A7 | 72.73 | 3 | 12.5 | 8 |
| A8 | 80 | 4 | 6 | 16 |
| A9 | 73.53 | 9 | 6 | 25 |
| A10 | 72.73 | 3 | 6.5 | 8 |
>TRINITY_DN42986_c0_g1_i1 from sample A7 / Example spliced isoformGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGCTATCTCCAACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGAAAATGCTCGATATCTTTGGACAAGGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGC
TATCTCCAACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGCAAAATGCGGTGTCTATTATTTGGATTGCATTCTATGGCGTTTTTACAGCTATTGCAGTGTGAAGAAGATTGGAGGCGTGCTTTCCAGCTGTATGCTTTAGGTGTTTTGTCATTCCTCATCAGCCTAATTCCT
ATTGGGTGGATCAAGTTTTATTACTCTCCGCTCACAGCATATATTTTTATTGGAGTTATTGTTGTTTCCATTATTGCTTGGTAAGATTCTATGCGTAGAGTAGCACTAAGATGCAGTTGTAAATTTACCTTTTTTATTTTGAACTTTTTCTTAGAATTTGGTGAAACTATAAATCGCAAAAGATGGTGCCAAAAAAACAT
TTTTTTGTTTGTTTAGACCATCATTAAAAATTTTACATTTGACTTAGAATAGGTCCTTTTTAC
>TRINITY_DN42986_c0_g1_i11 from sample A7 / Example unspliced isoform:TCGCCACATCGCAAATAAAAAGTTATACGACGAGGGAACTTTGACAACCATCTATAATTTTTTAACCATAGGAACGGGATTTGCCCTTCCAAGAACATAAATTTGATCTGTTTGCCAGTAGAGAAATCATCATAGTACAACCCAGCCCGGCAAAGATTTTCCTTTGTCCAACGAACTACCTTCACCCAACTTTTAAGTAA
TATCTGAGCGAGAAATCCTTGAAGTTCCGCTGTAAAGTGCAGATAAAAATATGGATATGAAAGAAAAAGGAAAAGATGAGCAAAAGATGCGCCTCCTGTAACAACTTCAAAGGTGTCGCAGACCATTAAACCTGTGTGAAGAGATCTCAGGGGGTAAGATAGAAGTTGCAGAGAACTAAACAAATAATTGTGAGCACGAA
TGAATGAATAAAGGTTGACGATATCTGCACATGTATGCTTGTCATAGTCGTCAGGCATTGAAGAAGAACAGGACATAATCAGATGGAGTCGTCGTCCGCCATGGACATGGGGCAGATGCTGCTGACGGCCTTTGACACGAGCATGTCCAAATACTGGCGTGAAGAGGACCGCAGATGGAGGGCAGAGGACAGAATATGGA
GGGAAGATGACCTCAATTATCGCGAGGAGGAGCGCCAATGGAGAGTTCAGGAAAAGTTCATGCAGGAAGCCGAGATCAAATGGAGGCGGGAGGATATGGAACAAAGGCATGTTGAAAATGCTCGATATCTTTGGACAAGGTTTGTGGAAAAAAATCGGAGGGATGTTGAAGAAAAGTCAGAGCAACTGAAGGCTATCTCC
AACCTTGCTGCACTCTTTGCAGGATTTGCAGTGGTTACATTGACTCAGTTTTCATTTCAGCAAAATGCGGTGTCTATTATTTGGATTGCATTCTATGGCGTTTTTACAGCTATTGCAgtgagtgcgataaggttggattgatgacaattgcaatggttacctgcacgttaattcttggcagtattttaaaaaatgggaaa
tcctatgtgaatgaagtagcagaagaagacttcatgttcaagtgtcacacatttgtagaatcttatcagattggtgaccgccccccatttcccaggaggacctttgagaacttttgggacataagGTGTGAAGAAGATTGGAGGCGTGCTTTCCAGCTGTATGCTTTAGGTGTTTTGTCATTCCTCATCAGCCTAATTCC
TATTGGGTGGATCAAGTTTTATTACTCTCCGCTCACAGCATATATTTTTATTGGAGTTATTGTTGTTTCCATTATTGCTTGGCTTCTTGTACAGTACTTCTGGGGTGGTTATTTAAGTAGTAGCTCTAGTAAGAGGAATGAAGTTTTGGCAGAAAGCGTGCAACCTGTCGGCTTGCCCTTTGATTGGCATCTTGTTCCTG
GAGTTCCCCCATCCCAGCAGAGGCAAAGCTGAAATTGGTTATGTACATTAGATTAAAAGCCTTTGGTCGTTACAATTGAAGAATGTATTCCAAAGTCATAACCAAGAAACTGGAAAAAAGCAAGTGATTGTAGCAATAGATTTATAAAAGAAGTAATCATTTGCACAATGAGGTATGCATTTGCTGATGTAGACTAATTT
AGCTAGCACTGCTCATTTTTCCTTGGTATATTTTAGACGAAAACCCTTCAATGGAGGGGTTTACTATAATGATATGCTCAATGTTGAATAGATGGAAGTTTGAGCATAGTACTTACACAACTAAACTTCAAGAATATCTACAGAATTAAGGAATTTACAAGTTTCCAAGGGGCATCATCACTACGTGCGATTACATTATC
CAGTAGCTGAATAGACGATGGTAGACACCCCAGCACAAACATCCTAAAAGTAGCTAGCCTGGATAATTACTGCTGTCCTTCTAAATGCAGGATCCAAATATGGTCGGCCTTGTTTGATTACTGCAAGTGTTACTGTGTAGCGAGGATGGAATTTGAGACTTTTATTAGGAAAATTCTTCTCTTTGCCCATTAGACCACAA
GTTCATATCCAAGAGGAATATTGCAATGATAAATGTGATTGTAGAATTATTGTGCGGATTAGTACAATCTTGGTGCATTGGCCAAAAGAGGACAATCATCAATGAGATTAAACAAAGAAACCTAGCAATAAACAAGATGGCTATAAAGTGTGTCACTCTAATA