NA ----> NA
Intron 1 GCCCCTGACA ... TCTTTTCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.19 | 272 | 7.3 | 25.7 |
| A2 | 8.62 | 305 | 3.7 | 31.3 |
| A3 | 5.54 | 442 | 7.7 | 27.7 |
| A4 | 3.11 | 438 | 6.3 | 14.7 |
| A5 | 7.94 | 126 | 4.3 | 12.3 |
| A6 | 3.25 | 68 | 0 | 2.3 |
| A7 | 8.6 | 332 | 10.3 | 34.3 |
| A8 | 9.9 | 64 | 0.7 | 7.3 |
| A9 | 6.4 | 325 | 15.3 | 24 |
| A10 | 5.97 | 388 | 14.7 | 26.7 |
>TRINITY_DN48167_c0_g3_i3 from sample A7 / Example spliced isoformCGAGAACCTCCTTGAATACGCTCAAGGATTTGGATTTGTGCTGCCCCAGCCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTAGCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACGTCTGCTGCTTAAATGCTTTTGTC
TTTGCCCTCCTGAATTCTCTTATAATCTGAAAGAAATTAGGGTTTCCTTCAAATGCCGGTAGGATTGATTTTTCTTAAAACCGTCTGGAACTTTATTTATTTGGCTAAATTGCTGGAAGCCCCAGATTTTATCCCCAGAATTTAGAATTTGCTAATTGTAGTGGCTAAGTTAAAGGTTGCGAAACTCAGTTTAGCTGGGC
ATAAAAGAGAATCTGAAATCCTTACAGTCAAACGCGGATAAGCTTAAAGTGTGTTTTTGATAGAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACG
ATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGGTCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCAC
CATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATGGAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGG
CAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTAT
CTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGACCCCTAACAAGAGCGCTGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAG
TGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTGTCTTTGTCTAATGCAAAAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGA
GAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGA
ATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACA
CTGAATCCATACACTGGCCCTGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGT
AGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTA
AAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGAC
AAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGA
GCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTAC
AGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGAT
CAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTT
TGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTC
AAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGTTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGA
TGCATTTTGTAGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCA
TGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGG
GCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAA
ATCTTGGAATAACAACCGTTTTGTCTTTGTAGCAGTTATTGGCATGGCTGATATGTGTTCTTTGATATGCCAGGATATATGTTTTATAATGGATGGCTACAACGTTATTTTGTTCTTTTTCAATTTTAACATTTAGATAAAAGTGTTTGGTGGTGG
>TRINITY_DN48167_c0_g3_i1 from sample A7 / Example unspliced isoform:AAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGgcccctgacaagagcgatggggtatcttttcgagGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTA
TCTTTGTCTAATGCAAAAGACGTGGGTAATATAACTCTGTGCATGGCTGGTGAGACCCCTAATCCCTAACAGGAGCGATGGACAAGAGCGCTGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCT
AACAGGAGTGATGGGGTGTCTTTGTCTAATGCAAAAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGA
TCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAG
CAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCT
GTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAA
CAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAA
ATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTC
AGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCA
TATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTG
TTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGATCAGTGCAATGGTCATTCTCTT
TCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTTTGAAGGCCATAAAAATGTACC
AGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTCAAAGCTACCCTCATGTGGTAC
ATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGTTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGATGCATTTTGTAGGTTATTCCA
AGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCATGTTCCAAAGGAACATTTTGA
ATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGGGCACTAAGATCACTTTTCCTC
TGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAAATCTTGGAATAACAACCGTTT
TGTCTTTGTAGCAGTTATTGGCATGGCTGATATGTGTTCTTTGATATGCCAGGATATATGTTTTATAATGGATGGCTACAACGTTATTTTGTTCTTTTTCAATTTTAACATTTAGATAAAAGTGTTTGGTGGTGG
Intron 2 GTGGGTAATA ... CTGTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.89 | 123.7 | 6 | 42 |
| A2 | 40.73 | 131.3 | 6 | 32 |
| A3 | 42.8 | 201.3 | 4 | 50 |
| A4 | 42.13 | 237 | 7 | 58 |
| A5 | 37.93 | 54 | 1 | 6 |
| A6 | 37.25 | 32 | 0 | 3 |
| A7 | 42.63 | 168.7 | 0 | 41 |
| A8 | 40 | 36 | 0 | 6 |
| A9 | 39.39 | 173.7 | 2 | 31 |
| A10 | 41.16 | 165.3 | 0 | 33 |
>TRINITY_DN110295_c0_g1_i3 from sample A4 / Example spliced isoformAAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGGTGGGTAATATAACTCTGGTGAGGTTAGTCTGGGAACAATTATGAATGCTTGAATTTGTCAGACATTGGTTGTAATGTGTCGCAAAACATACGTAAGGATTAGTGATCTCCAACTTTCTAAGTATTTTTTAAA
TTATAAAGTATGAGAGAACTAAGAACCTTAATGGTGTCTGTAAACAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGAT
GGGGTATCTTTGTCTAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTAAAGAGTGCATGGCGTGTGAGACCC
CTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAGGGTAATATAACTCTGGTGAG
>TRINITY_DN110295_c0_g1_i3 from sample A4 / Example unspliced isoform:AAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGgtgggtaatataactctggtgaggttagtctgggaacaattatgaatgcttgaatttgtcagacattggttgtaatgtgtcgcaaaacatacgtaaggattagtgatctccaactttctaagtattttttaaa
ttataaagtatgagagaactaagaaccttaatggtgtctgtaaacagTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGAT
GGGGTATCTTTGTCTAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTAAAGAGTGCATGGCGTGTGAGACCC
CTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAGGGTAATATAACTCTGGTGAG
Intron 3 GTGTGTAATA ... TGCAAAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.53 | 70 | 18 | 30 |
| A2 | 40 | 54 | 20 | 52 |
| A3 | 20.46 | 103 | 18 | 35 |
| A4 | 16.84 | 121 | 10 | 39 |
| A5 | 21.95 | 32 | 7 | 11 |
| A6 | 40.74 | 8 | 4 | 7 |
| A7 | 24.19 | 94 | 12 | 48 |
| A8 | 60.71 | 11 | 10 | 24 |
| A9 | 24.05 | 120 | 25 | 51 |
| A10 | 26.1 | 109 | 24 | 53 |
>TRINITY_DN122549_c0_g1_i13 from sample A2 / Example spliced isoformAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTGCATGGC
TTGTGAGAGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTACCCTTAACAAGAGCGATGAGGTTAAAAGACGTGGGTAATATAACTCTGTGCATGGCTGGTGAGACCCCTAACAAGAGCGCTGGGGTATCTTTGTCTAA
TGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGT
>TRINITY_DN122549_c0_g1_i20 from sample A2 / Example unspliced isoform:AAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTTGAGACCCTTAACAAGAGCGATGAGGTTTCCCTAACAGGAGTGATGGGGTAT
CTTTGTCTAATGCAAAAGACGTGGGTAATATAACTCTGTGCATGGCTGGTGAGACCCCTAACAAGAGCGCTGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGgtgtgtaatataactctggtgagtgcatggcttgtgagatcc
ctaacaggagtgatggggtgtctttgtctaatgcaaaagagTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTGGGTAATATAACTCTGGTGAGAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACT
GAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAA
GAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAA
CACTGAATCCATACACTGGCCCTGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAAT
GTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGG
TAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGG
ACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCACCTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCA
GAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCT
ACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAG
ATCAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCG
TTTGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGG
TCAAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGTTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGA
GATGCATTTTGTAGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTC
CATGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGG
GGGCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTCACAGGATGTTCA
Intron 4 ATTAGTCTGG ... GTCTGTAAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.94 | 26 | 7 | 27 |
| A2 | 56 | 11 | 9 | 14 |
| A3 | 64.71 | 12 | 12 | 22 |
| A4 | 53.33 | 21 | 10 | 24 |
| A5 | 57.14 | 6 | 4 | 8 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 41.03 | 23 | 0 | 16 |
| A8 | 44.44 | 5 | 2 | 4 |
| A9 | 41.46 | 24 | 2 | 17 |
| A10 | 40.91 | 13 | 0 | 9 |
>TRINITY_DN110295_c0_g1_i1 from sample A4 / Example spliced isoformGTATCTTTGTCTAATGCAAAAGAGGTGGGTAATATAACTCTGGTGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGAATGCAAAAGAGTGAAAA
GAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAGTTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGA
GCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAAC
ATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCTGTGTCTATGGATATGGGCTATACTGATACTGTCAGT
GACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGA
GAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTGGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTG
ATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCGCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCACCTAAAGTTTCACTT
GTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGA
CTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCCAGTAAATAAGCTTGGTTTCATTCAAAGAA
AGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTATACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATGCTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGATCAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAAT
TCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTTTGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTC
AGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTCAAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGG
GGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGCTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGATGCATTTTGTAGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTG
TTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGGCCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCATGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTA
TATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGGGCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCT
TACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTCACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAAATCTTGGAATAACA
>TRINITY_DN110295_c0_g1_i5 from sample A4 / Example unspliced isoform:AATGCAAAAGAGTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGGTGGGTAATATAACTCTGGTGAGattagtctggaaacaattatgaatgcttgaatttgtcagacattggtcttaatgtgttgcaaaacttacataaggattagtgactccaatttcttaagtatttct
ttaataatcaagtatgagagaactaagaagcttaatggtgtctgtaaacTGCATGGCTTGCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGAATGCAAAAGAGTGAA
AAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTGGGTAATATAACTCTGGTGAG
Intron 5 GTCTTTGTCT ... AATGCAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.47 | 17 | 93 | 67 |
| A2 | 91.59 | 9 | 123 | 73 |
| A3 | 78.11 | 29 | 125 | 82 |
| A4 | 82.19 | 22 | 126 | 77 |
| A5 | 92.59 | 3 | 51 | 24 |
| A6 | 100 | 0 | 19 | 7 |
| A7 | 91.06 | 11 | 146 | 78 |
| A8 | 78.95 | 8 | 29 | 31 |
| A9 | 86.49 | 15 | 124 | 68 |
| A10 | 90.85 | 13 | 181 | 77 |
>TRINITY_DN119832_c1_g1_i13 from sample A3 / Example spliced isoformCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACGTCTGCTGCTTAAATGCTTTTGTCTTTGCCCTCCTGAATTCTCTTATAATCTGAAAGAAATTAGGGTTTCCTTC
AAATGCCGGTAGGATTGATTTTTCTTAAAACCGTCTGGAACTTTATTTATTTGGCTAAATTGCTGGAAGCCCCAGATTTTATCCCCAGAATTTAGAATTTGCTAATTGTAGTGGCTAAGTTAAAGGTTGCGAAACTCAGTTTAGCTGGGCATAAAAGAGAATCTGAAATCCTTACAGTCAAACGCGGATAAGCTTAAAGT
GTGTTTTTGATAGAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGG
TCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACCATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATG
GAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGCAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAA
CAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGC
GATGGGGTATCTTTGTCTAGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGTGCATGGCTTGTGAGACCCTTAACAAGAGCAATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGA
AGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCA
AAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAAT
CTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGA
TTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGG
TCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTG
CAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGA
TCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTA
AGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGT
AGGCTTAATTGTCAGAAG
>TRINITY_DN119832_c1_g1_i14 from sample A3 / Example unspliced isoform:CAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGTATCTTTGTCTAATGCAAAAGAGTGCATGG
CTTGTGAGACCCTTAACAAGAGCAATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTgtctttgtctaatgcaaaagagtgcatggcgtgtgagacccctaataggagcaatggggtatctttgtctaatgcaaaagAGGTAGCTGACAATCCAGGGTCTATATCA
TCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGA
TGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGG
GACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGG
CTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATAC
AACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTC
AACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGT
ATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATG
TGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAAT
ACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGATCAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGT
CATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTTTGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAAT
ATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTCAAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAGAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGCTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCA
TGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGATGCATTTTGTGGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCA
CATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCATGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACA
GTGCTGCTTTCCTCAAAGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGGGCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTC
CTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAAATCTTGG
Intron 6 GTGTGTAATA ... CTCTGGTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.03 | 90.8 | 12 | 13 |
| A2 | 42.95 | 84.8 | 12 | 15 |
| A3 | 33.09 | 131 | 7 | 8 |
| A4 | 38.44 | 149.3 | 10 | 18 |
| A5 | 32.76 | 42.5 | 4 | 3 |
| A6 | 55.46 | 19 | 3 | 5 |
| A7 | 33.38 | 107.8 | 9 | 14 |
| A8 | 50.68 | 20 | 4 | 6 |
| A9 | 31.82 | 112 | 13 | 14 |
| A10 | 33.77 | 120.8 | 18 | 20 |
>TRINITY_DN48167_c0_g3_i3 from sample A7 / Example spliced isoformCGAGAACCTCCTTGAATACGCTCAAGGATTTGGATTTGTGCTGCCCCAGCCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTAGCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACGTCTGCTGCTTAAATGCTTTTGTC
TTTGCCCTCCTGAATTCTCTTATAATCTGAAAGAAATTAGGGTTTCCTTCAAATGCCGGTAGGATTGATTTTTCTTAAAACCGTCTGGAACTTTATTTATTTGGCTAAATTGCTGGAAGCCCCAGATTTTATCCCCAGAATTTAGAATTTGCTAATTGTAGTGGCTAAGTTAAAGGTTGCGAAACTCAGTTTAGCTGGGC
ATAAAAGAGAATCTGAAATCCTTACAGTCAAACGCGGATAAGCTTAAAGTGTGTTTTTGATAGAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACG
ATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGGTCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCAC
CATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATGGAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGG
CAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTAT
CTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGACCCCTAACAAGAGCGCTGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAG
TGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTGTCTTTGTCTAATGCAAAAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGA
GAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGA
ATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACA
CTGAATCCATACACTGGCCCTGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGT
AGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTA
AAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGAC
AAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGA
GCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTAC
AGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGAT
CAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTT
TGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTC
AAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGTTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGA
TGCATTTTGTAGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCA
TGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGG
GCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAA
ATCTTGGAATAACAACCGTTTTGTCTTTGTAGCAGTTATTGGCATGGCTGATATGTGTTCTTTGATATGCCAGGATATATGTTTTATAATGGATGGCTACAACGTTATTTTGTTCTTTTTCAATTTTAACATTTAGATAAAAGTGTTTGGTGGTGG
>TRINITY_DN48167_c0_g3_i5 from sample A7 / Example unspliced isoform:AAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTCGAGGCCCCTGACAAGAGCGATGTGGTATCTTTGTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTA
TCTTTGTCTAATGCAAAAGACGTGGGTAATATAACTCTGTGCATGGCTGGTGAGACCCCTAATCCCTAACAGGAGCGATGGACAAGAGCGCTGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGACCCTTAACAAGAGCGATGAGGTTTCTTTGTCTAATGCAAAAGAGgtgtgtaatataactctggtg
agTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTGTCTTTGTCTAATGCAAAAGAGTGCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACT
GAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAA
GAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAA
CACTGAATCCATACACTGGCCCTGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAAATTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAAT
GTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGG
TAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGG
ACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCA
GAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCT
ACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAG
ATCAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCG
TTTGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGG
TCAAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAAAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGTTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGA
GATGCATTTTGTAGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTC
CATGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCATGGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGG
GGGCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGAT
AAATCTTGGAATAACAACCGTTTTGTCTTTGTAGCAGTTATTGGCATGGCTGATATGTGTTCTTTGATATGCCAGGATATATGTTTTATAATGGATGGCTACAACGTTATTTTGTTCTTTTTCAATTTTAACATTTAGATAAAAGTGTTTGGTGGTGG
Intron 7 GTGGGTAATA ... GTGAGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 3 | 0 |
| A2 | 55.56 | 12 | 15 | 0 |
| A3 | 60 | 10 | 15 | 0 |
| A4 | 100 | 0 | 1 | 0 |
| A5 | 50 | 1 | 1 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 73.68 | 5 | 14 | 0 |
| A8 | 66.67 | 3 | 6 | 0 |
| A9 | 56.25 | 7 | 9 | 0 |
| A10 | 34.62 | 17 | 9 | 0 |
>TRINITY_DN132184_c0_g1_i16 from sample A1 / Example spliced isoformGAGAACCTCCTTGAATACGCTCAAGGATTTGGATTTGTGCTGCCCCAGCCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACGTCTGCTGCTTAAATGCTTTTGTCT
TTGCCCTCCTGAATTCTCTTATAATCTGAAAGAAATTAGGGTTTCCTTCAAATGCCGGTAGGATTGATTTTTCTTAAAACCGTCTGGAACTTTATTTATTTGGCTAAATTGCTGGAAGCCCCAGATTTTATCCCCAGAATTTAGAATTTGCTAATTGTAGTGGCTAAGTTAAAGGTTGCGAAACTCAGTTTAGCTGGGCA
TAAAAGAGAATCTGAAATCCTTACAGTCAAACGCGGATAAGCTTAAAGTGTGTTTTTGATAGAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGA
TGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGGTCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACC
ATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATGGAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGC
AGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATC
TTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGGGTGAGACCCCTAACAAGAGCGCTGAGTGAGATCCCTAACAGGAGTGATG
GGGTCATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGA
>TRINITY_DN132184_c0_g1_i11 from sample A1 / Example unspliced isoform:GTTGGCAGGAAACCTTTAAGGAGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAA
AGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGGTGAGACCCCTAACAAGAGCGCTGGAGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGGGTGAGACCCCTAACAAGAGCGCTGAGgtgggtaatataactctggtgagtttagTGAGATCCCT
AACAGGAGTGATGGGGTTCTGGGAACAATTATGAATGCTTGAATTTGTCAGACATGGCGTGTGAGACCCCTAATAGGAGCAATGGGGTATCTTTGTCTAATGCAAAAGAGGTTGCATGGCTGGTGAGATCCCTAACAGGAGCGATGGAGTATCTTTGTCTAATGCAAAAGAGGGTAATATAACTCTGGTGAGGATAGTCT
GGGAAAAATTATGAATGCT
Intron 8 GTGAGACCCC ... TGCAAAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 97.45 | 3 | 92 | 137 |
| A2 | 96.58 | 4 | 89 | 137 |
| A3 | 97.6 | 4 | 122 | 204 |
| A4 | 98.49 | 3 | 149 | 242 |
| A5 | 89.74 | 6 | 40 | 65 |
| A6 | 100 | 0 | 29 | 48 |
| A7 | 100 | 0 | 124 | 198 |
| A8 | 97.67 | 1 | 37 | 47 |
| A9 | 95.83 | 8 | 147 | 221 |
| A10 | 99 | 2 | 154 | 241 |
>TRINITY_DN119832_c1_g1_i13 from sample A3 / Example spliced isoformCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACGTCTGCTGCTTAAATGCTTTTGTCTTTGCCCTCCTGAATTCTCTTATAATCTGAAAGAAATTAGGGTTTCCTTC
AAATGCCGGTAGGATTGATTTTTCTTAAAACCGTCTGGAACTTTATTTATTTGGCTAAATTGCTGGAAGCCCCAGATTTTATCCCCAGAATTTAGAATTTGCTAATTGTAGTGGCTAAGTTAAAGGTTGCGAAACTCAGTTTAGCTGGGCATAAAAGAGAATCTGAAATCCTTACAGTCAAACGCGGATAAGCTTAAAGT
GTGTTTTTGATAGAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGG
TCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACCATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATG
GAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGCAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAA
CAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGC
GATGGGGTATCTTTGTCTAGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGTGCATGGCTTGTGAGACCCTTAACAAGAGCAATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGA
AGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCA
AAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAAT
CTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGA
TTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGG
TCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTG
CAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGA
TCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTA
AGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGT
AGGCTTAATTGTCAGAAG
>TRINITY_DN119832_c1_g1_i7 from sample A3 / Example unspliced isoform:CAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTAT
CTTTGTCTAATCCCTAACAGGAGTGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGgtgagacccctaagaagagcgatggggtatctttgtctaatgcaaaagagTGCATGGCTTGTGAGACCCTTAACAAGAGCAATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAG
GAGTGATGGGGTATCTTTGTCTAATGCAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTT
GGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTAC
TATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGG
AGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAA
AGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCC
GAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAA
ATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAA
GTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTA
CTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAG
Intron 9 GTCTGCTGCT ... TTTTTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.88 | 28.8 | 18 | 61 |
| A2 | 58.87 | 19.3 | 22 | 33 |
| A3 | 48.56 | 26.5 | 23 | 27 |
| A4 | 56.39 | 36 | 20 | 73 |
| A5 | 56.75 | 20.5 | 29.8 | 24 |
| A6 | 100 | 0 | 0 | 2 |
| A7 | 52.94 | 23 | 9.8 | 42 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 52.29 | 11.3 | 14.5 | 10 |
| A10 | 56.94 | 20.3 | 30.5 | 23 |
>TRINITY_DN119832_c1_g1_i17 from sample A3 / Example spliced isoformCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAG
TGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGGTCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCA
AGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACCATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATGGAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCC
CGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGCAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGTAGCTGACAATCCAGGGTCTATATCATCACAATCTA
AGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCT
AGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCC
TAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAG
AGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATG
CTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGAC
TCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAA
AGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGA
AGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTAC
ATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGATCAGTGCAATGGTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATG
AGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTTTGAAGGCCATAAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCG
AGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTCAAAGCTACCCTCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAGAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGCTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATG
TCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGATGCATTTTGTGGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCT
GCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCATGTTCCAAAGGAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTT
CCTCAAAGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGGGCACTAAGATCACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGAC
AGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAAATCTTGG
>TRINITY_DN119832_c1_g1_i13 from sample A3 / Example unspliced isoform:CGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACgtctgctgcttaaatgcttttgtctttgccctcctgaattctcttataatctgaaagaaattagggtttccttc
aaatgccggtaggattgatttttcttaaaaccgtctggaactttatttatttggctaaattgctggaagccccagattttatccccagaatttagaatttgctaattgtagtggctaagttaaaggttgcgaaactcagtttagctgggcataaaagagaatctgaaatccttacagtcaaacgcggataagcttaaagt
gtgtttttgatagAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAGTGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGG
TCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCAAGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACCATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATG
GAAAGATGGTCCTGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCCCGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGCAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAA
CAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGC
GATGGGGTATCTTTGTCTAGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGTGCATGGCTTGTGAGACCCTTAACAAGAGCAATGAGGTTTCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGATCCCTAACAGGAGTGATGGGGTAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGA
AGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCA
AAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAAT
CTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGA
TTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGG
TCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTG
CAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGA
TCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTA
AGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGT
AGGCTTAATTGTCAGAAG
Intron 10 GTGAGATCCC ... TGCAAAAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.91 | 12 | 29 | 39 |
| A2 | 72.41 | 8 | 19 | 23 |
| A3 | 65.59 | 16 | 21 | 40 |
| A4 | 69.77 | 13 | 22 | 38 |
| A5 | 82.61 | 2 | 10 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 84 | 6 | 32 | 31 |
| A8 | 69.7 | 5 | 8 | 15 |
| A9 | 73.03 | 12 | 28 | 37 |
| A10 | 83.78 | 6 | 28 | 34 |
>TRINITY_DN119832_c1_g1_i11 from sample A3 / Example spliced isoformCGTTAATAAAGCATCTCCCACATAAATTTGCCCGCTCACGGCGCCTTCTCGCCGTGAGCTGCTTGGTCGTCTACCTCACTCCACTACTTCGACACTACAGGATATGGTCAAGCGAGCTTTTTCAACAATTTGCACAATGGCAACGGAGACGAGAATTCCCAAGCTGGAATTCAAGTCCGGAGATGATGCTTGGTACGAAG
TGGCCATTGAGCTTGTAGGTTCGCGCCTCAAGGTCCATTATGAAGACTTTACGGAAGACGACGATGAGATGCTGCCATTGAAAGAAGAGTTTAAAACTGTAGAGGACATAAGGTCGCGATTTCGATTCACATCCAAACAACTTCAGGATAACCATTGCGGGAGGGTGAAAGAGGGCACGGACGTCTGTGTCTCTTGCTCA
AGCGACGGTGACGATAATAGATTTTTCGATGCCGTTATCAAGCAGGTTCATCGGTCTAAGCACCATTTGGTGGCGGGTGAGGAGCAGTGTACATGTACTTTCAAGGTATTATGGAAAGCTGGTCCAGTTGCAAACAGAAGGACCTCTGTTTCCTGTGAGAACATCTGCGTGTTGATTGCAGGAAGCATTGAAACTCATCC
CGTAATTAATGAGTTGATAAGGTTGGTGGAGGAAAAATTAGACTCCAGGACACGGTCGGTTGGCAGGAAACCTTTAAGGAGTAAGAGACCAAACACAAAAGGAAGAGATGCAACAAACTTCAAAGACAGACAGGCACGACCAGGGAAGAGAGCAGATGAAAAAGGCATGGCTTGTGAGACCACTAACAGGAGGGATGAGG
TATCTTTGTCTAATGCAAAAGAGTGCATGGCTTGTGAGGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGTGCATGGCTAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTCACTGGTTATGATCTCTTGCTC
CAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGTTCCGCCTGAAGCAGCATCTCT
ATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCATACACTGGCCCCGTGTCTATGG
ATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAATGGCATTGAAAACAGTGGAAGA
ATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAACACTTTGGAAAATTTCTTACA
ACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTGTCAAACACCTCAGAAGCAATG
AGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATGAAGAAGGTGCATATTAATGTT
TGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCATACATACAACTGTTGATCTAGT
AAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAG
>TRINITY_DN119832_c1_g1_i2 from sample A3 / Example unspliced isoform:CAAAAGAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCAGTGCATGGCTTGTGAGGCCCCTGACAAGAGCGATGGGGTATCTTTTTCTAATGCAAAAGAGTTCATGGCTTGTGAGACCCCTAACAGGAGCGATGGGGTAT
CTTTGTCTAGATGGGGTATCTTTGTCTAATGCAAAAGAGTGCATGGCTGgtgagatccctaacaggagcgatggagtatctttgtctaatgcaaaagagTGCATGGCTAGGTAGCTGACAATCCAGGGTCTATATCATCACAATCTAAGGAAGAAGAGAAGAAATTTGAGGAGGAATTAAGTGCCACTGAGAATGTTCTC
ACTGGTTATGATCTCTTGCTCCAAGAAAGAGCTGCCAGTGATAATGAGCTGAAAAGTTCTGTTGAAAGCGACTCCAATGTTGGCTTTGAAGCAAATATTTCCTCATATTCACATAGAGTTACTACACTAAAAGAAGATGGCATATCTAGCAAAATAACAAGTCTTCAAGGGGAAAATGATATATGCAAGAATGATTCTGT
TCCGCCTGAAGCAGCATCTCTATCCTCATGGAATAAAAATTTCCAACATGAAATTGTATCAAAAAATGGCAAGGAAGCTACTATTGATGCAGAAGTCCTCAAATGCAAGGAAACAAATTTGAATATGGGGAGAAAGGGACAAAAGCCTAATCTTCCTGATCTGAATTCATTCCCTGTTGAGTTAGAAACACTGAATCCAT
ACACTGGCCCCGTGTCTATGGATATGGGCTATACTGATACTGTCAGTGACAATGCAAATACAACAGATAAAAATTTTTGGGAGTTGGATGATAGGGCAGTAATTATTGAAAATACATGGCCTTGTCATAGTGGTTGGCTTGAGGCAGAGGATTGTGATAACCTTCTTGAGGAGTGTACAGATCATAATGTAGTTTGCAAT
GGCATTGAAAACAGTGGAAGAATAAGCAAACAATTGACAATTGGAGACAATCAGAAGGGTCAAGAAATTACAAATGATAAAAGTTTAGAAAAACATTTCCTTGCATCTTGGGGCAGGGTTAAGCGGCACAAGCATACAACTGAAATGCTGGTCAGTGAAAGGCTAGTACAGGACAACAGCGAGAAAGGTAAAGATACAAA
CACTTTGGAAAATTTCTTACAACCTACCAGTGATTCTGATGGATTTGATATTTTACGATCAAGTTTGACAACTTCACCTCCGAAACCTCTCAATCCAGAGAAACCTCTTGATTGCTATAGATACAAATGTGGAATTCAACATCAGACTCTGCAGAATGTGGAAGAGATTGGAAATGATGTATATGAGGACAAACTACCTG
TCAAACACCTCAGAAGCAATGAGGTGCAAGCAACTAAAGTTTCACTTGTAGCAGTGGACGACAAAAACAGGGAATCCAGAAATGTTGATATTGGTGCGTTAAAATGCAATTACTTGACAACTCAATCTGTGAAACGTATCAAAAGAAAGGATCCGTTTAATACTTTTAAAGAACTGAGTGGTCCTCCAGAGCAACCCATG
AAGAAGGTGCATATTAATGTTTGTGAACTCACACACAAACAAGCTGACTGTGAGATAAGTCCACTAGATGTCCGGCCTCAAGTAGTGGTTATTTCATCTGATGATGAAAATGACTTTGCTTCTCCAAGGAAGGAATGTGACTATGGAAGTAAGGATTTCAGCAGTCAACATAAAGATCATGTTCATCTACAGGAAGGCAT
ACATACAACTGTTGATCTAGTAAATAAGCTTGGTTTCATTCAAAGAAAGAGTTGTAAAAGGAGAAAAGAAGATAAAATGTACTCTACAGCTATGTGTAAAGGTCATATCAATGAACCAGGCATAAAGGAAGACAAATACTACTGTACATGTAGGCTTAATTGTCAGAAGCATATATTGGCAACACAAGATCAGTGCAATG
GTCATTCTCTTTCAGAAAAGTACAACTGGTCTTCAGCTGGTTCAAATTCTGCTAACATTCCTTCCCATTTGAAAGTTGATCCTCAGAGGCACTGCTTTCATTCTACTTCTAAATATTGTGAACAGCCAAGCCATGGTCATATGAATGAGCCAGGCACAATGGAGGACAAATCGTACTGTACATGTTCGTTTGAAGGCCAT
AAAAATGTACCAGTGTCACAACATCAGTGCAATGGTGATTCTCTTTCAGAAAAGTGGACCTGTTGTTCTTCAGGAGGTCCTTCCCACGATAAAGGCCTTGGGTTGTGATTGATACTGAGGATGGAGTATGTATAAATATTGATACCGAGGAAGGCATCTTTGGAGCTTTTACTGTAAATTCACAGGGGTCAAAGCTACCC
TCATGTGGTACATCGGCGTTAGAGAAGGTGCACTTCGTGCGTAAAGGGGAAGAGGCATATGAAAAAGCGAAAAGAAGGAAAGACGCTTTTCTGAAATTCAGGGATAATTTAGCGCTTCTCCACAGGCAATTGAAGCATGAATAAATGTCCTTCGTGGATTTACGTAAATGAAATCAGTGGTTATCCGAGATGCATTTTGT
GGGTTATTCCAAGCAAAATATGGATATAGCCTATTTGTTTACTGCTGTTTCATCAAATTTGTTAGCGCACATACAGAAGTGGTGTTTAAACAGTGGAGAAATCAAACAGGGACCAAGGCCAGAGAGGGACATTGTCACATTACTGCTGCCTTGTTCGCCTCAGTGGTATATGAATTGGCCATCTATTCCATGTTCCAAAG
GAACATTTTGAATTTATAGCAAGGTTGTCACTTTCTGATGCAATCTATATTACAGAGATGTAGACAACTGATTTATGTTGGTAATGTATATTAGTAGTGGACATACAGTGAGCAATATTGATATAATTTATCCCACAGTGCTGCTTTCCTCAAAGGGGAATTGTGCACCACTGTTTTTGTTTGGTAGGGGGCACTAAGAT
CACTTTTCCTCTGGTGCTGTTCTTCTCTTCTCACAGGACGTTCATCTTACTTGTAATTGCCTAATTTTCTGGTAAAATTTTTGAATAACAACGGTCTTGTCTTTGCTGTTGTTCCCGGCCTTCCACCAGTGCTGGTCCTTTTCTGACAGGATGTTCACCTCATTTTTTTAATTGCCCAATTTTCCGATAAATCTTGG