NA ----> NA
Intron 1 GTATGCATCT ... TGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.98 | 181 | 7 | 54 |
| A2 | 24.38 | 152 | 5 | 49 |
| A3 | 14.2 | 145 | 4 | 24 |
| A4 | 16.76 | 149 | 3 | 30 |
| A5 | 16.35 | 87 | 3 | 17 |
| A6 | 20.4 | 1065 | 8 | 273 |
| A7 | 17.45 | 596 | 0 | 126 |
| A8 | 20.86 | 406 | 5 | 107 |
| A9 | 16.14 | 582 | 4 | 112 |
| A10 | 18.1 | 561 | 0 | 124 |
>TRINITY_DN122566_c7_g2_i2 from sample A1 / Example spliced isoformATTTTTTTCATTGGGGGTTGGTGTTGGGCCAAAAAGGCCGATTTGTAGCGCTATGTCGGTGTAGTTGTCGCCACGGGAGGAGGTCTTTTAAATCTTCAAAGCCCGACCCTATTGCCATTCCCATTTCCATCCCATTCACTTTCATTCTTTCATTTTATTTTGTGCGCTAGGGTTTCAAGCTGCTGAAAACCCTGACCAAT
TTTTTCCTCAGCATCCGCCACGGCGCCTAGGTGTGCTAAATACTCTTGGGCTATTTGAGGGAAAGAAGTGAAGCCTGTTCAAATTTTGACTCTGCTTCGTTGCCATTCAATTTTGGTTATAAACTTGAATGAACTATAAGATTCATGCAGCATCTTGCTGCTAAGAATAACTTGGTAGGATCAGGAGAAATGAAAGAAAT
GGGTAGACTAAGGGCTGCAATCATGAGAGAAAAATGTGAGGAGGTTGTTTTTTGTCCAAAGCCACGAAGAGTTGGGTTAGCAATAAATCCAATTCCAGAGCTTTCGAAATCCACAAGGCGGCATCGCAGCCATTCTCCAGAATACAACGAGTCTGAACCTGGAGTGGAGATTCTAGACATATTTCTGAGTAGGAGCGGTT
GTGGCGATTCATTAAGCTTTGGATGTTCACCACCATATTTTAATGGATCTCCTCCCAGTCGAGCAGATAATCCTCTTGTGCATGATATCAATTTCATTCATCAGAGAGTGCAGGCCCCACCCTCAACTCTTTCAAAGCCCAAATCATTCGGCAGGTCTTCATTTGGGCCTAATGCGGCTGTTCGAGTTGAAGGTTTTGAT
TGTTCTGGGAGGGATACAAGGTGTAGTATCCCTGCACTGGCATGACTTGCAGACATTTACACTGACGATTGACTAAATTGCAGAGTAAGGACTGCCTGAGATATTTCATGTATAAAGATAGTTATGATACCTCTAAAATCACATACTGTAAATTTTGTATTCATATGAGTGGGGCTTTCCAACACGGCAGGGGTGTAAAT
GTTGAAAAGTTCGTTTAATTGCGGATATTATTATTCAGCGATGTGCACTTATTGAGAGAGCATTTGTAGTCCTCATTGAGGATTGTTTTCTCCGAGGCTATTATTTCCAGAGATGAAGTCTTTCCTCTAATTTCTGGATTAGATTTTGTCGGAGTATGGAAGATATGCCAGGTGCTTATGCATCCCCATTACTTGTAAGC
TGTACAGATTCGGAGTCATGTAATTGGATGTAATTTTAAACGTTTTAGTTGTATTTTAGATGCAGTCTTGTAAGATGTAAGAAAGGTCTGAAGAATAAAGATTTGCATTGCGGACTTGTATATAATGTCTACGTATCGAAGATGTAAATTACAATCATCTATACATGGACATTTTGTCCTGGTTTAGTTTGTAGTATATT
GTCTCTTAGATTGCTGTCTTTGAATTTTTCTTAAACCTGTTGTTTTTCTCAATGAAAGAGGGATAACACGGTGATAATTACAAATATACG
>TRINITY_DN122566_c7_g2_i1 from sample A1 / Example unspliced isoform:ATTTTTTTCATTGGGGGTTGGTGTTGGGCCAAAAAGGCCGATTTGTAGCGCTATGTCGGTGTAGTTGTCGCCACGGGAGGAGGTCTTTTAAATCTTCAAAGCCCGACCCTATTGCCATTCCCATTTCCATCCCATTCACTTTCATTCTTTCATTTTATTTTGTGCGCTAGGGTTTCAAGCTGCTGAAAACCCTGACCAAT
TTTTTCCTCAGCATCCGCCACGGCGCCTAGGTGTGCTAAATACTCTTGGGCTATTTGAGGGAAAGAAGTGAAGCCTGTTCAAATTTTGACTCTGCTTCGTTGCCATTCAATTTTGGTTATAAACTTGAATGAACTATAAGATTCATGCAGCATCTTGCTGCTAAGAATAACTTGGTAGGATCAGGAGAAATGAAAGAAAT
GGGTAGACTAAGGGCTGCAATCATGAGAGAAAAATGTGAGGAGGTTGTTTTTTGTCCAAAGCCACGAAGAGTTGGGTTAGCAATAAATCCAATTCCAGAGCTTTCGAAATCCACAAGGCGGCATCGCAGGTAAGTTAAAGTTAATATTTTGTGTTCAATTGTAAGTTCTATTTTATCGGTAGATGATGCTCTTGATATTT
GTTGTATGCATTGATACTGATATTCATCCTCACTATCTTGTGCTATCTTCAGCCATTCTCCAGAATACAACGAGTCTGAACCTGGAGTGGAGATTCTAGACATATTTCTGAGTAGGgtatgcatctttttcattgtataattgtagaattgcaactgcagctctcccaatatttgttgttcttttgaactagaggaggtg
tttagtgattggcttttattttgttgtgcagAGCGGTTGTGGCGATTCATTAAGCTTTGGATGTTCACCACCATATTTTAATGGATCTCCTCCCAGTCGAGCAGATAATCCTCTTGTGCATGATATCAATTTCATTCATCAGAGAGTGCAGGCCCCACCCTCAACTCTTTCAAAGCCCAAATCATTCGGCAGGTCTTCAT
TTGGGCCTAATGCGGCTGTTCGAGTTGAAGGTTTTGATTGTTCTGGGAGGGATACAAGGTGTAGTATCCCTGCACTGGCATGACTTGCAGACATTTACACTGACGATTGACTAAATTGCAGAGTAAGGACTGCCTGAGATATTTCATGTATAAAGATAGTTATGATACCTCTAAAATCACATACTGTAAATTTTGTATTC
ATATGAGTGGGGCTTTCCAACACGGCAGGGGTGTAAATGTTGAAAAGTTCGTTTAATTGCGGATATTATTATTCAGCGATGTGCACTTATTGAGAGAGCATTTGTAGTCCTCATTGAGGATTGTTTTCTCCGAGGCTATTATTTCCAGAGATGAAGTCTTTCCTCTAATTTCTGGATTAGATTTTGTCGGAGTATGGAAG
ATATGCCAGGTGCTTATGCATCCCCATTACTTGTAAGCTGTACAGATTCGGAGTCATGTAATTGGATGTAATTTTAAACGTTTTAGTTGTATTTTAGATGCAGTCTTGTAAGATGTAAGAAAGGTCTGAAGAATAAAGATTTGCATTGCGGACTTGTATATAATGTCTACGTATCGAAGATGTAAATTACAATCATCTAT
ACATGGACATTTTGTCCTGGTTTAGTTTGTAGTATATTGTCTCTTAGATTGCTGTCTTTGAATTTTTCTTAAACCTGTTGTTTTTCTCAATGAAAGAGGGATAACACGGTGATAATTACAAATATACG
Intron 2 GTAAGTTAAA ... CTATCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.5 | 167 | 33 | 9 |
| A2 | 17.59 | 178 | 38 | 3.8 |
| A3 | 20 | 220 | 55 | 2.3 |
| A4 | 18.45 | 168 | 38 | 3 |
| A5 | 20.31 | 102 | 26 | 2.3 |
| A6 | 19.55 | 1292 | 314 | 4.3 |
| A7 | 19.13 | 778 | 184 | 0 |
| A8 | 19.85 | 521 | 129 | 3 |
| A9 | 17.17 | 762 | 158 | 3 |
| A10 | 16.09 | 709 | 136 | 0 |
>TRINITY_DN122566_c7_g2_i2 from sample A1 / Example spliced isoformATTTTTTTCATTGGGGGTTGGTGTTGGGCCAAAAAGGCCGATTTGTAGCGCTATGTCGGTGTAGTTGTCGCCACGGGAGGAGGTCTTTTAAATCTTCAAAGCCCGACCCTATTGCCATTCCCATTTCCATCCCATTCACTTTCATTCTTTCATTTTATTTTGTGCGCTAGGGTTTCAAGCTGCTGAAAACCCTGACCAAT
TTTTTCCTCAGCATCCGCCACGGCGCCTAGGTGTGCTAAATACTCTTGGGCTATTTGAGGGAAAGAAGTGAAGCCTGTTCAAATTTTGACTCTGCTTCGTTGCCATTCAATTTTGGTTATAAACTTGAATGAACTATAAGATTCATGCAGCATCTTGCTGCTAAGAATAACTTGGTAGGATCAGGAGAAATGAAAGAAAT
GGGTAGACTAAGGGCTGCAATCATGAGAGAAAAATGTGAGGAGGTTGTTTTTTGTCCAAAGCCACGAAGAGTTGGGTTAGCAATAAATCCAATTCCAGAGCTTTCGAAATCCACAAGGCGGCATCGCAGCCATTCTCCAGAATACAACGAGTCTGAACCTGGAGTGGAGATTCTAGACATATTTCTGAGTAGGAGCGGTT
GTGGCGATTCATTAAGCTTTGGATGTTCACCACCATATTTTAATGGATCTCCTCCCAGTCGAGCAGATAATCCTCTTGTGCATGATATCAATTTCATTCATCAGAGAGTGCAGGCCCCACCCTCAACTCTTTCAAAGCCCAAATCATTCGGCAGGTCTTCATTTGGGCCTAATGCGGCTGTTCGAGTTGAAGGTTTTGAT
TGTTCTGGGAGGGATACAAGGTGTAGTATCCCTGCACTGGCATGACTTGCAGACATTTACACTGACGATTGACTAAATTGCAGAGTAAGGACTGCCTGAGATATTTCATGTATAAAGATAGTTATGATACCTCTAAAATCACATACTGTAAATTTTGTATTCATATGAGTGGGGCTTTCCAACACGGCAGGGGTGTAAAT
GTTGAAAAGTTCGTTTAATTGCGGATATTATTATTCAGCGATGTGCACTTATTGAGAGAGCATTTGTAGTCCTCATTGAGGATTGTTTTCTCCGAGGCTATTATTTCCAGAGATGAAGTCTTTCCTCTAATTTCTGGATTAGATTTTGTCGGAGTATGGAAGATATGCCAGGTGCTTATGCATCCCCATTACTTGTAAGC
TGTACAGATTCGGAGTCATGTAATTGGATGTAATTTTAAACGTTTTAGTTGTATTTTAGATGCAGTCTTGTAAGATGTAAGAAAGGTCTGAAGAATAAAGATTTGCATTGCGGACTTGTATATAATGTCTACGTATCGAAGATGTAAATTACAATCATCTATACATGGACATTTTGTCCTGGTTTAGTTTGTAGTATATT
GTCTCTTAGATTGCTGTCTTTGAATTTTTCTTAAACCTGTTGTTTTTCTCAATGAAAGAGGGATAACACGGTGATAATTACAAATATACG
>TRINITY_DN122566_c7_g2_i1 from sample A1 / Example unspliced isoform:ATTTTTTTCATTGGGGGTTGGTGTTGGGCCAAAAAGGCCGATTTGTAGCGCTATGTCGGTGTAGTTGTCGCCACGGGAGGAGGTCTTTTAAATCTTCAAAGCCCGACCCTATTGCCATTCCCATTTCCATCCCATTCACTTTCATTCTTTCATTTTATTTTGTGCGCTAGGGTTTCAAGCTGCTGAAAACCCTGACCAAT
TTTTTCCTCAGCATCCGCCACGGCGCCTAGGTGTGCTAAATACTCTTGGGCTATTTGAGGGAAAGAAGTGAAGCCTGTTCAAATTTTGACTCTGCTTCGTTGCCATTCAATTTTGGTTATAAACTTGAATGAACTATAAGATTCATGCAGCATCTTGCTGCTAAGAATAACTTGGTAGGATCAGGAGAAATGAAAGAAAT
GGGTAGACTAAGGGCTGCAATCATGAGAGAAAAATGTGAGGAGGTTGTTTTTTGTCCAAAGCCACGAAGAGTTGGGTTAGCAATAAATCCAATTCCAGAGCTTTCGAAATCCACAAGGCGGCATCGCAGgtaagttaaagttaatattttgtgttcaattgtaagttctattttatcggtagatgatgctcttgatattt
gttgtatgcattgatactgatattcatcctcactatcttgtgctatcttcagCCATTCTCCAGAATACAACGAGTCTGAACCTGGAGTGGAGATTCTAGACATATTTCTGAGTAGGGTATGCATCTTTTTCATTGTATAATTGTAGAATTGCAACTGCAGCTCTCCCAATATTTGTTGTTCTTTTGAACTAGAGGAGGTG
TTTAGTGATTGGCTTTTATTTTGTTGTGCAGAGCGGTTGTGGCGATTCATTAAGCTTTGGATGTTCACCACCATATTTTAATGGATCTCCTCCCAGTCGAGCAGATAATCCTCTTGTGCATGATATCAATTTCATTCATCAGAGAGTGCAGGCCCCACCCTCAACTCTTTCAAAGCCCAAATCATTCGGCAGGTCTTCAT
TTGGGCCTAATGCGGCTGTTCGAGTTGAAGGTTTTGATTGTTCTGGGAGGGATACAAGGTGTAGTATCCCTGCACTGGCATGACTTGCAGACATTTACACTGACGATTGACTAAATTGCAGAGTAAGGACTGCCTGAGATATTTCATGTATAAAGATAGTTATGATACCTCTAAAATCACATACTGTAAATTTTGTATTC
ATATGAGTGGGGCTTTCCAACACGGCAGGGGTGTAAATGTTGAAAAGTTCGTTTAATTGCGGATATTATTATTCAGCGATGTGCACTTATTGAGAGAGCATTTGTAGTCCTCATTGAGGATTGTTTTCTCCGAGGCTATTATTTCCAGAGATGAAGTCTTTCCTCTAATTTCTGGATTAGATTTTGTCGGAGTATGGAAG
ATATGCCAGGTGCTTATGCATCCCCATTACTTGTAAGCTGTACAGATTCGGAGTCATGTAATTGGATGTAATTTTAAACGTTTTAGTTGTATTTTAGATGCAGTCTTGTAAGATGTAAGAAAGGTCTGAAGAATAAAGATTTGCATTGCGGACTTGTATATAATGTCTACGTATCGAAGATGTAAATTACAATCATCTAT
ACATGGACATTTTGTCCTGGTTTAGTTTGTAGTATATTGTCTCTTAGATTGCTGTCTTTGAATTTTTCTTAAACCTGTTGTTTTTCTCAATGAAAGAGGGATAACACGGTGATAATTACAAATATACG