sp|Q0E2Z7|RH41_ORYSJ ----> DEAD-box ATP-dependent RNA helicase 41
Intron 1 GTAATGGCCT ... ATTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.57 | 16.7 | 8.7 | 49 |
| A2 | 66.6 | 17.1 | 9.1 | 34 |
| A3 | 83.56 | 8.9 | 5.7 | 45 |
| A4 | 67.44 | 14 | 2 | 29 |
| A5 | 100 | 0 | 2 | 9 |
| A6 | 76.84 | 44 | 12 | 146 |
| A7 | 78.68 | 47.4 | 14.6 | 175 |
| A8 | 77.36 | 29.3 | 5.4 | 100 |
| A9 | 77.2 | 48.7 | 26.9 | 165 |
| A10 | 82.95 | 45.4 | 19.7 | 221 |
>TRINITY_DN110123_c0_g1_i2 from sample A1 / Example spliced isoformATGAATTTGATCTCCTCCGAATTAAACGAGACAAACACAAAAACAAGTCATAAAAAAAAGGGTTAACTTGTATGAAGCACATTGTTGTGATGCAAAGTCAAATTTATGAAGGACCAATTCCCCACTAACGCGTTGAAGAATGATTTACTTATCTCAGTATCATCCTCGTCGCAGACAAACAAGAGGGTTTCAGTTATCCA
GAAAGAAAAATGATAATGGGTAAACGAGGCAGATTTGGTATCGCAGCGCTGATCGTGGTAGGGGTGGCTATCTACATTGTAATCAGCAGAGTGTATGGAGGAGATAAGCAGGCCATCATGGAGGGTTTTCATGATCTGTTTACCAAAATGGGGATCTGGGCAATGCCAACTTATGTCATAATTCACACAATTACACTCGC
CCTGTGTTTACCATATGCGGTGTTTTTTTGAGGCAGGGGCTGCCCTTCTCTTCGGCTTCTTCCGCGGGGTGCTCTGCGTCTTCTCCGCTAAAATGCTTGGAGCTTCGCTGTCCTTCTGGTTGGGACGGGCATTGTTTAGGAGTTCAAGCTCGGCAATGGCTTGGGTGCAGAGAAACAAGTATTTTCATATTCTTAGCAAG
GGAGTTGCTCGGGACGGGTGGAGATTTGTTTTACTTGCACGATTTTCTCCCGTGCCGTCCTACGTGATCAATTATGGATTAGCTGCCACAGATGTTCGCTTTTTTGTTGATTTTCTCATCCCTACAGTTGTTGGATGCATTCCCATGATTTTACAGAATACATCCATTGGTAGCCTGACCAATGCGGCCGTGTCATCAGA
TAGTAGATCAGGGAAGAGTCAGCTTTCTTCTTACTTGTTTCCTCTACTTGGAATAACATCTAGTGTACTGATCTCTTTACGAATTAAAAAGTATTCGTCAGAGATAAACATCCTTGATGATACATCTCAAGGTAATAATTCCATAACGAAGACAAAAGTAGATGCAATTAGTTCAACCCGAATGACTTCTGAAGGCTGTA
ACGAAGACAAAAGTAGACCGAGGAAAAGATCATCATGTTCGTGCAGTTAGAACTCATTATATATGTTCTCAACAGTTTTCGATCACTTAATGATTATTATAACCCTTACCCATTCTGATTGTTGCGAATATTGAGTGCTGATTGTTTCAAAGAGTCTCCTGTGGAATCCAGGAACATCTTAACCATTTTGCCAACCAGTG
CAACATGAGAAAACTTATTTGCAAGGAAGGAAGATAAATATAAAAAAGCTTCTTGGGCAATGTTTGAGTATTTTTGTTTACTATTTTACAGTAATTGTAATTGTATATCTGGATTGTGTCAACCG
>TRINITY_DN110123_c0_g1_i1 from sample A1 / Example unspliced isoform:ATGAATTTGATCTCCTCCGAATTAAACGAGACAAACACAAAAACAAGTCATAAAAAAAAGGGTTAACTTGTATGAAGCACATTGTTGTGATGCAAAGTCAAATTTATGAAGGACCAATTCCCCACTAACGCGTTGAAGAATGATTTACTTATCTCAGTATCATCCTCGTCGCAGgtaatggcctacacctttatccatta
tctatccactatcaagaatcatagtcagattttgagacaccccgtcacagcaactatatatacaatacaaacgaaaaccatttttcattcctcagacgcagcctgtaaaatcatttgaaacagagaattggcaggtagtgtggttaaaacagtcgagtgtgttatggtttagcagtagatcggaggggtttattttaatt
agtcgagatttaatttgtttctttatcttttctgggctcttcctgagaataccggaagctaaacgtgccggtgttcgattctctcagACAAACAAGAGGGTTTCAGTTATCCAGAAAGAAAAATGATAATGGGTAAACGAGGCAGATTTGGTATCGCAGCGCTGATCGTGGTAGGGGTGGCTATCTACATTGTAATCAGC
AGAGTGTATGGAGGAGATAAGCAGGCCATCATGGAGGGTTTTCATGATCTGTTTACCAAAATGGGGATCTGGGCAATGCCAACTTATGTCATAATTCACACAATTACACTCGCCCTGTGTTTACCATATGCGGTGTTTTTTGAGGCAGGGGCTGCCCTTCTCTTCGGCTTCTTCCGCGGGGTGCTCTGCGTCTTCTCCGC
TAAAATGCTTGGAGCTTCGCTGTCCTTCTGGTTGGGACGGGCATTGTTTAGGAGTTCAAGCTCGGCAATGGCTTGGGTGCAGAGAAACAAGTATTTTCATATTCTTAGCAAGGGAGTTGCTCGGGACGGGTGGAGATTTGTTTTACTTGCACGATTTTCTCCCGTGCCGTCCTACGTGATCAATTATGGATTAGCTGCCA
CAGATGTTCGCTTTTTTGTTGATTTTCTCATCCCTACAGTTGTTGGATGCATTCCCATGATTTTACAGAATACATCCATTGGTAGCCTGACCAATGCGGCCGTGTCATCAGATAGTAGATCAGGGAAGAGTCAGCTTTCTTCTTACTTGTTTCCTCTACTTGGAATAACATCTAGTGTACTGATCTCTTTACGAATTAAA
AAGTATTCGTCAGAGATAAACATCCTTGATGATACATCTCAAGGTAATAATTCCATAACGAAGACAAAAGTAGATGCAATTAGTTCAACCCGAATGACTTCTGAAGGCTGTAACGAAGACAAAAGTAGACCGAGGAAAAGATCATCATGTTCGTGCAGTTAGAACTCATTATATATGTTCTCAACAGTTTTCGATCACTT
AATGATTATTATAACCCTTACCCATTCTGATTGTTGCGAATATTGAGTGCTGATTGTTTCAAAGAGTCTCCTGTGGAATCCAGGAACATCTTAACCATTTTGCCAACCAGTGCAACATGAGAAAACTTATTTGCAAGGAAGGAAGATAAATATAAAAAAGCTTCTTGGGCAATGTTTGAGTATTTTTGTTTACTATTTTA
CAGTAATTGTAATTGTATATCTGGATTGTGTCAACCG