NA ----> NA
Intron 1 GTAATACTTC ... CATGTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 56 | 15 | 25 |
| A2 | 23.26 | 33 | 7 | 13 |
| A3 | 21.52 | 62 | 17 | 17 |
| A4 | 20.53 | 60 | 14 | 17 |
| A5 | 19.35 | 25 | 5 | 7 |
| A6 | 17.71 | 72 | 11 | 20 |
| A7 | 18.27 | 85 | 14 | 24 |
| A8 | 17.56 | 54 | 12 | 11 |
| A9 | 21.65 | 76 | 22 | 20 |
| A10 | 15.74 | 91 | 12 | 22 |
>TRINITY_DN109255_c0_g1_i1 from sample A1 / Example spliced isoformGCCATGCCTTCTATGTCATTTGCTGGCGAAAAAACATTAGCACTTGCAATGACAGATCTCGTACTCTTTGTCCATCCCACCGTTGCTTCCAAATTTAATCAAACAGACTGGTTCTGCCAAGACAGACATACGCTTGGCCTTCGGGCTCCGAAATTTCGTGCCTTATCATCTACCTTTTATGGGAAACCATGTGGAATTCT
TCTTCATGGCTGCAGTTCAAGGATTCAGACTGTCACACAGGCGGGAGCTGCAAGAATAACTACAATTACATCTGCTTTGGACCGGGAGCTTCGTACGGTGCTTGAATTGGCCAGTGATGACGAGCTTTGTGAGCTCTGTGATATTTTATATGGCCAAAGCATTTTGAGCCCATTGCTGAAGTCAGTCACATACAGGGATG
GTCCTCAGGATATATTAGTGCAACTGGATGATCAAGAAGCAAGAGAAGCATTGATGGAGCGCCTTGAGTCTCGTTTTTTGTTCCTGGCAGCAGATGCCAAAGCCACTCTAAGTGGTCGTAGGCCCTCTTATCACCAAGTGTTACTTCAAGTGAGGAAGAAACTGAATGTTCCATGCTCAACCAAGTTATCAACTGAGGAC
ATGGAGTCTGAGATATTCCTTCACTTACTGCAAGAATATTCAAGCAAACAAAAACAGCCAAGAAACTTCTCCTGGAAGAACAGAATCTCTCATGTTAATAGAATAGAGAAGCAACAGCAAGGACCTGGTCAATGGAGAGGGTATATTTCTGCTGCACTTAAGCTTGGTGCTGAAGAACTCCTCTCAGTAATTTTGAAGGG
AGGCAGTGCTGTGACTGTTTCAAAAATTCAGCACATGCTAGCAAGGAGAGTCTCTGGAAAAATGTTGTTGGAGGCCTCGAAGTATCAACTTGCAAAGGAAATGTTGAAGCAGGGTGGACAAGCAGCAGCTACAAAGTTAGAGACGCATGTAGCCATGCTTGCAGCAAGACAGGGGTTTGCTTGTGCTGCTTCAAATTATG
TTGCTCTTAGAAGCATGATGATGCTTCTTGGCCCATTATTATGGGGAACGTTTCTGGCAGATATTGTAATCAGAGCAGCTGGTACAGACTATGCTAGAGTCGTCCGGGCAATCTATGCCTTTGCTCAGATTCGGCTTACACGCACATATGGGTGGACAGCTTCCAAGCATCAACTTGGCATTCAAGTTGTGAAGATCTAA
GCATTTCATTCAGACGGGTAGTTGGAGAATGAAAAATTTCCTAGAACCTATTATAAACTGTAAAATAGAATTTGCATGAAGCAATATAATGTAATTATGAGTGAGATACTTGTTTTCATCAGCAAGAGCTTGTAATGACCTATTGGCTCTGGAAACTTCAAGTTTTAGAACTTATAGAAACTATGCTACAGGCTTGGAGG
CCCATCGTATAATGTAATTCTTATGAGCTGATGGAAGGTGTTCATTATCACAGTTCAGACATGTTTAAGTGCAAATGGTTACTTGGAATCTTCGCAGTTTCTGAATCTTGCAGTATCACATACATTCAAGGGGGCTTTGAGGTAACGGTTTTCCTTCCACACCAGTCTTGCATATTTACATGAATGGATACTTACCTGGA
GCTATTGATATTCCTGTATTTAATTTTTATGTTGATATAATCTAGTCTGCAACTACAATTGATTGTCGGAATTTGTTGTGATAGGAATATAGCACAATGTCTAGTTTTTGTAGGCATGCCATGAAGTCTACTGGGTGTAGGATTGGAGGCTCATTGTAGATTTTTTTTGTTATAGAAATACATCAGAATGTCTAGTTTTG
ATGGTTATGTCATGGGGGTTCTATTGGGTGTACGTTCCATTACAACTTGGAATCCTATTAGTATTAACATAATAACCAAAAG
>TRINITY_DN109255_c0_g1_i2 from sample A1 / Example unspliced isoform:GCCATGCCTTCTATGTCATTTGCTGGCGAAAAAACATTAGCACTTGCAATGACAGATCTCGTACTCTTTGTCCATCCCACCGTTGCTTCCAAATTTAATCAAACAGACTGGTTCTGCCAAGACAGACATACGCTTGGCCTTCGGgtaatacttcataaccatcaattcttggacattccttctctgtatcttaaaaatct
cgaagaagttactaagagaattgttcaattacatgtaccagGCTCCGAAATTTCGTGCCTTATCATCTACCTTTTATGGGAAACCATGTGGAATTCTTCTTCATGGCTGCAGTTCAAGGATTCAGACTGTCACACAGGCGGGAGCTGCAAGAATAACTACAATTACATCTGCTTTGGACCGGGAGCTTCGTACGGTGCTT
GAATTGGCCAGTGATGACGAGCTTTGTGAGCTCTGTGATATTTTATATGGCCAAAGCATTTTGAGCCCATTGCTGAAGTCAGTCACATACAGGGATGGTCCTCAGGATATATTAGTGCAACTGGATGATCAAGAAGCAAGAGAAGCATTGATGGAGCGCCTTGAGTCTCGTTTTTTGTTCCTGGCAGCAGATGCCAAAGC
CACTCTAAGTGGTCGTAGGCCCTCTTATCACCAAGTGTTACTTCAAGTGAGGAAGAAACTGAATGTTCCATGCTCAACCAAGTTATCAACTGAGGACATGGAGTCTGAGATATTCCTTCACTTACTGCAAGAATATTCAAGCAAACAAAAACAGCCAAGAAACTTCTCCTGGAAGAACAGAATCTCTCATGTTAATAGAA
TAGAGAAGCAACAGCAAGGACCTGGTCAATGGAGAGGGTATATTTCTGCTGCACTTAAGCTTGGTGCTGAAGAACTCCTCTCAGTAATTTTGAAGGGAGGCAGTGCTGTGACTGTTTCAAAAATTCAGCACATGCTAGCAAGGAGAGTCTCTGGAAAAATGTTGTTGGAGGCCTCGAAGTATCAACTTGCAAAGGAAATG
TTGAAGCAGGGTGGACAAGCAGCAGCTACAAAGTTAGAGACGCATGTAGCCATGCTTGCAGCAAGACAGGGGTTTGCTTGTGCTGCTTCAAATTATGTTGCTCTTAGAAGCATGATGATGCTTCTTGGCCCATTATTATGGGGAACGTTTCTGGCAGATATTGTAATCAGAGCAGCTGGTACAGACTATGCTAGAGTCGT
CCGGGCAATCTATGCCTTTGCTCAGATTCGGCTTACACGCACATATGGGTGGACAGCTTCCAAGCATCAACTTGGCATTCAAGTTGTGAAGATCTAAGCATTTCATTCAGACGGGTAGTTGGAGAATGAAAAATTTCCTAGAACCTATTATAAACTGTAAAATAGAATTTGCATGAAGCAATATAATGTAATTATGAGTG
AGATACTTGTTTTCATCAGCAAGAGCTTGTAATGACCTATTGGCTCTGGAAACTTCAAGTTTTAGAACTTATAGAAACTATGCTACAGGCTTGGAGGCCCATCGTATAATGTAATTCTTATGAGCTGATGGAAGGTGTTCATTATCACAGTTCAGACATGTTTAAGTGCAAATGGTTACTTGGAATCTTCGCAGTTTCTG
AATCTTGCAGTATCACATACATTCAAGGGGGCTTTGAGGTAACGGTTTTCCTTCCACACCAGTCTTGCATATTTACATGAATGGATACTTACCTGGAGCTATTGATATTCCTGTATTTAATTTTTATGTTGATATAATCTAGTCTGCAACTACAATTGATTGTCGGAATTTGTTGTGATAGGAATATAGCACAATGTCTA
GTTTTTGTAGGCATGCCATGAAGTCTACTGGGTGTAGGATTGGAGGCTCATTGTAGATTTTTTTTGTTATAGAAATACATCAGAATGTCTAGTTTTGATGGTTATGTCATGGGGGTTCTATTGGGTGTACGTTCCATTACAACTTGGAATCCTATTAGTATTAACATAATAACCAAAAG
Intron 2 GTTTCACTCA ... TGTCGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.6 | 34 | 7 | 14 |
| A2 | 31.58 | 26 | 6 | 18 |
| A3 | 12.2 | 18 | 2 | 3 |
| A4 | 21.88 | 25 | 4 | 10 |
| A5 | 29.73 | 13 | 4 | 7 |
| A6 | 26.56 | 47 | 11 | 23 |
| A7 | 26.38 | 60 | 14 | 29 |
| A8 | 23.7 | 66 | 14 | 27 |
| A9 | 21.43 | 88 | 16 | 32 |
| A10 | 23.61 | 55 | 4 | 30 |
>TRINITY_DN38352_c0_g2_i1 from sample A6 / Example spliced isoformTATACATGGCTGAAGCCATGCCTTCTATGTCATTTGCTGGCGAAAAAACATTAGCACTTGCAATGACAGATCTCGTACTCTTTGTCCATCCCACCGTTGCTTCCAAATTTAATCAAACAGACTGGTTCTGCCAAGACAGACATACGCTTGGCCTTCGGGCTCCGAAATTTCGTGCCTTATCATCTACCTTTTATGGGAAA
CCATGTGGAATTCTTCTTCATGGCTGCAGTTCAAGGATTCAGACTGTCACACAGGCGGGAGCTGCAAGAATAACTACAATTACATCTGCTTTGGACCGGGAGCTTCGTACGGTGCTTGAATTGGCCAGTGATGACGAGCTTTGTGAGCTCTGTGATATTTTATATGGCCAAAGCATTTTGAGCCCATTGCTGAAGTCAGT
CACATACAGGGATGGTCCTCAGGATATATTAGTGCAACTGGATGATCAAGAAGCAAGAGAAGCATTGATGGAGCGCCTTGAGTCTCGTTTTTTGTTCCTGGCAGCAGATGCCAAAGCCACTCTAAGTGGTCGTAGGCCCTCTTATCACCAAGTGTTACTTCAAGTGAGGAAGAAACTGAATGTTCCATGCTCAACCAAGT
TATCAACTGAGGACATGGAGTCTGAGATATTCCTTCACTTACTGCAAGAATATTCAAGCAAACAAAAACAGCCAAGAAACTTCTCCTGGAAGAACAGAATCTCTCATGTTAATAGAATAGAGAAGCAACAGCAAGGACCTGGTCAATGGAGAGGGTATATTTCTGCTGCACTTAAGCTTGGTGCTGAAGAACTCCTCTCA
GTAATTTTGAAGGGAGGCAGTGCTGTGACTGTTTCAAAAATTCAGCACATGCTAGCAAGGAGAGTCTCTGGAAAAATGTTGTTGGAGGCCTCGAAGTATCAACTTGCAAAGGAAATGTTGAAGCAGGGTGGACAAGCAGCAGCTACAAAGTTAGAGACGCATGTAGCCATGCTTGCAGCAAGACAGGGGTTTGCTTGTGC
TGCTTCAAATTATGTTGCTCTTAGAAGCATGATGATGCTTCTTGGCCCATTATTATGGGGAACGTTTCTGGCAGATATTGTAATCAGAGCAGCTGGTACAGACTATGCTAGAGTCGTCCGGGCAATCTATGCCTTTGCTCAGATTCGGCTTACACGCACATATGGGTGGACAGCTTCCAAGCATCAACTTGGCATTCAAG
TTGTGAAGATCTAAGCATTTCATTCAGACGGGTAAGGTTATTGTTCTCAAGGGAAATGTTTCTGGCCCTAGGTTGTAGACATGCTTCACTATTGTAAAGAGCCAGTAGTGCAACCTTTTTGCAAACATTTCTGAGTGATAATTGTAGAGATTCTTGCCAGTTAGTCTCTTTTTATTGCAGTTCATCAGGCAAGTTTGGTA
GTGTTATGCAAGAACTTTATTTTTCACAACAACCATGTTTCTGGTTTGCTGTTTATTAACAGTATTTAAGGACTTCATTTTTTCCCACTGCTAAATCCC
>TRINITY_DN38352_c0_g2_i3 from sample A6 / Example unspliced isoform:TATACATGGCTGAAGCCATGCCTTCTATGTCATTTGCTGGCGAAAAAACATTAGCACTTGCAATGACAGATCTCGTACTCTTTGTCCATCCCACCGTTGCTTCCAAATTTAATCAAACAGACTGGTTCTGCCAAGACAGACATACGCTTGGCCTTCGGGCTCCGAAATTTCGTGCCTTATCATCTACCTTTTATGGGAAA
CCATGTGGAATTCTTCTTCATGGCTGCAGTTCAAGGATTCAGACTGTCACACAGGCGGGAGCTGCAAGAATAACTACAATTACATCTGCTTTGGACCGGGAGCTTCGTACGGTGCTTGAATTGGCCAGTGATGACGAGCTTTGTGAGCTCTGTGATATTTTATATGGCCAAAGCATTTTGAGCCCATTGCTGAAGTCAGT
CACATACAGGGATGGTCCTCAGGATATATTAGTGCAACTGGATGATCAAGAAGCAAGAGAAGCATTGATGGAGCGCCTTGAGTCTCGTTTTTTGTTCCTGGCAGCAGATGCCAAAGCCACTCTAAGTGGTCGTAGGCCCTCTTATCACCAAGTGTTACTTCAAGTGAGGAAGAAACTGAATGTTCCATGCTCAACCAAGT
TATCAACTGAGGACATGGAGTCTGAGATATTCCTTCACTTACTGCAAGAATATTCAAGCAAACAAAAACAGCCAAGAAACTTCTCCTGGAAGAACAGAATCTCTCATGTTAATAGAATAGAGAAGCAACAGCAAGGACCTGGTCAATGGAGAGGGTATATTTCTGCTGCACTTAAGCTTGGTGCTGAAGAACTCCTCTCA
GTAATTTTGAAGgtttcactcattcttcaattttgaactttgtcgcccagGGAGGCAGTGCTGTGACTGTTTCAAAAATTCAGCACATGCTAGCAAGGAGAGTCTCTGGAAAAATGTTGTTGGAGGCCTCGAAGTATCAACTTGCAAAGGAAATGTTGAAGCAGGGTGGACAAGCAGCAGCTACAAAGTTAGAGACGCAT
GTAGCCATGCTTGCAGCAAGACAGGGGTTTGCTTGTGCTGCTTCAAATTATGTTGCTCTTAGAAGCATGATGATGCTTCTTGGCCCATTATTATGGGGAACGTTTCTGGCAGATATTGTAATCAGAGCAGCTGGTACAGACTATGCTAGAGTCGTCCGGGCAATCTATGCCTTTGCTCAGATTCGGCTTACACGCACATA
TGGGTGGACAGCTTCCAAGCATCAACTTGGCATTCAAGTTGTGAAGATCTAAGCATTTCATTCAGACGGGTAGTTGGAGAATGAAAAATTTCCTAGAACCTATTATAAACTGTAAAATAGAATTTGCATGAAGCAATATAATGTAATTATGAGTGAGATACTTGTTTTCATCAGCAAGAGCTTGTAATGACCTATTGGCT
CTGGAAACTTCAAGTTTTAGAACTTATAGAAACTATGCTACAGGCTTGGAGGCCCATCGTATAATGTAATTCTTATGAGCTGATGGAAGGTGTTCATTATCACAGTTCAGACATGTTTAAGTGCAAATGGTTACTTGGAATCTTCGCAGTTTCTGAATCTTGCAGTATCACATACATTCAAGGGGGCTTTGAGGTAACGG
TTTTCCTTCCACACCAGTCTTGCATATTTACATGAATGGATACTTACCTGGAGCTATTGATATTCCTGTATTTAATTTTTATGTTGATATAATCTAGTCTGCAACTACAATTGATTGTCGGAATTTGTTGTGATAGGAATATAGCACAATGTCTAGTTTTTGTAGGCATGCCATGAAGTCTACTGGGTGTAGGATTGGAG
GCTCATTGTAGATTTTTTTTGTTATAGAAATACATCAGAATGTCTAGTTTTGATGGTTATGTCATGGGGGTTCTATTGGGTGTACGTTCCATTACAACTTGGAATCCTATTAGTATTAACATAATAACCAAAAGAATTCATGCGAATATATTTTTGCAGTGATT