NA ----> NA
Intron 1 GTCTGCTCTT ... GTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.15 | 7 | 8 | 4 |
| A2 | 53.85 | 9 | 9 | 12 |
| A3 | 48.72 | 10 | 11 | 8 |
| A4 | 76.47 | 2 | 7 | 6 |
| A5 | 86.67 | 1 | 12 | 1 |
| A6 | 51.85 | 39 | 46 | 38 |
| A7 | 55.91 | 41 | 59 | 45 |
| A8 | 49.64 | 46.7 | 50 | 42 |
| A9 | 57.73 | 44.7 | 61 | 61 |
| A10 | 54.79 | 29.7 | 49 | 23 |
>TRINITY_DN113142_c0_g2_i5 from sample A3 / Example spliced isoformACTAAATCTCCTGCTTTTATTGCCTACCTTTGTCAAAGGCTATATTACAAACATAGTTTTCAAATACTCATCTTCGTGTAGAATCCGTGGAGTGCGTAGAAAGAATTGTTGGAGTGTGAAAAGGGAAACATGAATATGAAATGAAATGGGCGAATTATCACGGTGGAATGCTAAGTATCAAATCGGACTGTAACGATCTC
CAGCAAAACCCTGTGCTAACACTATACTGAAAAGTTCTCAAGGGGAAACAAAATGAGTGGAGATATTGAAAAGGAGTTATTGAAGGCCCAAATCAGGGAGCTGAAGGATATGTGGCAGGTGGAATTGAGCCATAGACAAGCTCGAGAGGACCTTCTTGAATCAGAACTATTGGAGGTAAAAGAGTGTCTTTCGAATGCTG
AGAAAAGAGAGAAGAACGAAGTTGATCATCTTCGACGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATAATGTCTATGCCAGGTTTTGCATACACTGCATGTGGCATCAAATATGAAGAAGGCGTAGGATTTGTTGACAAAAAGGGCGTTCCCATGGCTGAGTGGTGTAAGGATCCT
AATTTTTCTCTATTTGAAAGTTCAAAGGTCAAAAGATGGGGGCAAAATTCAGATCCAAAATGTGAAGTGGACATGACAGGCCCTACAGAGCAGAGTGAACAGGAGTACGTTGAACAGATAGCTATGTCTGTGATGTTAGTGAATGATGTGATGGAGGTGCTTCTCAAAAGGACTATTATAGCTGAGACAGAGATTGCATT
GGAGAGGAAAAAGGCTAATGTAAGTCAGGATCAGGTGAAGAAGAAGGCACTGCAGATTGAGAACATGTGGGCACGAGTAGAAGAGATGGAGAGTATAGCCAAAGGAACCAGTGGGGTCTTACAGGAAATGCAGCAGAAGCTTGAACGTATGGAACAGGAGACTTCAAGGCAAAGACAACGTGCTACAGAAAATGAGCAGG
AACTGTCGAGGGTGAGGCACGATTTTGAGGTTTTAAGGTCTAATATTGATAATCTAACTGGTACAAGGGAGTCTCTGTTGTCATCTGAGAAACGATTCCAAGAAATGGAGAAAGTTTTGGAAAGGCTTACTTCCAAAGCTGCAAAATTGGAGGGTGCGAACAAGCAAAAAGATTTGGAAGTCTGTGACCTTTTAAAAACT
AATGATAGATTAAAAGCATCTCTGGATATTAAGGAGGCAGAATTGTCTGCTATGAGAGAACAGTGCAAGATTCTGGCAATACAATCTCAGAAAGTGAGAGAGAGTTGATAAAGTTACATCTACTGAGTTCCATTCAGAGCTGTGTAAATAAATGATGTGGTTGAAATTGGAGCCATGGTAATGATCAGGAAAGAAGGTAG
ATACCTCAAGTCTTAGCATCAAGAAGGGACCTTGTTTCTGCAGATGTGTTTGAAATGGTATTGATCAGGAAAGGCAGGAAAAGTGATCTGGCAAATTCCTGCATACAGTTGCAGTGGATAGTGGTAGTTTGTTATCGACTGCCACACGGGAGGAAGTTCTGTCGGAATGATTTAGTTATCATATTAAAGGACACACATCT
TTTCAGACATAGATTAATGTGGAAAAGTAACTGTTGAATTTCTGCTGGCATCTGTTAGCTTCTTTTCTGCTTCTGTAATAGAAAGAAATCATCGCAAATTGTTTTTTTATGATAAACATGTGCTTTATCAATATTTTGATTATGATTGCTATGAATTCTAGCGTATTTGCCA
>TRINITY_DN113142_c0_g2_i4 from sample A3 / Example unspliced isoform:ACTAAATCTCCTGCTTTTATTGCCTACCTTTGTCAAAGGCTATATTACAAACATAGTTTTCAAATACTCATCTTCGTGTAGAATCCGTGGAGTGCGTAGAAAGAATTGTTGGAGTGTGAAAAGGGAAACATGAATATGAAATGAAATGGGCGAATTATCACGGTGGAATGCTAAGTATCAAATCGGACTGTAACGATCTC
CAGCAAAACCCTGTGCTAACACTATACTGAAAAGTTCTCAAGGGGAAACAAAATGAGTGGAGATATTGAAAAGGAGTTATTGAAGGCCCAAATCAGGGAGCTGAAGGATATGTGGCAGGTGGAATTGAGCCATAGACAAGCTCGAGAGGACCTTCTTGAATCAGAACTATTGGAGGTAAAAGAGTGTCTTTCGAATGCTG
AGAAAAGAGAGAAGAACGAAGTTGATCATCTTCGACGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATAATGTCTATGCCAGGTTTTGCATACACTGCATGTGGCATCAAATATGAAGAAGGCGTAGGATTTGTTGACAAAAAGGGCGTTCCCATGGCTGAGTGGTGTAAGGATCCT
AATTTTTCTCTATTTGAAAGTTCAAAGGTCAAAAGATGGGGGCAAAATTCAGATCCAAAATGTGAAGTGGACATGACAGGCCCTACAGAGCAGAGTGAACAGGAGTACGTTGAACAGATAGCTATGTCTGTGATGTTAGTGAATGATGTGATGGAGGTGCTTCTCAAAAGGACTATTATAGCTGAGACAGAGATTGCATT
GGAGAGGAAAAAGGCTAATGTAAGTCAGGATCAGGTGAAGAAGAAGGCACTGCAGATTGAGAACATGTGGGCACGAGTAGAAGAGATGGAGAGTATAGCCAAAGGAACCAGTGGGGTCTTACAGGAAATGCAGCAGAAGCTTGAACGTATGGAACAGGAGACTTCAAGGCAAAGACAACGTGCTACAGAAAATGAGCAGG
AACTGTCGAGGGTGAGGCACGATTTTGAGGTTTTAAGGTCTAATATTGATAATCTAACTGGTACAAGGGAGTCTCTGTTGTCATCTGAGAAACGATTCCAAGAAATGGAGAAAGTTTTGGAAAGGCTTACTTCCAAAGCTGCAAAATTGGAGGGTGCGAACAAGCAAAAAGATTTGGAAGTCTGTGACCTTTTAAAAACT
AATGATAGATTAAAAGCATCTCTGGATATTAAGGAGGCAGAATTGTCTGCTATGAGAGAACAGTGCAAGATTCTGGCAATACAATCTCAGAAAGTGAGAGAGAGTTGATAAAGTTACATCTACTGAGTTCCATTCAGAGCTGTGTAAATAAATGgtctgctcttaatttgtttccaagtttttattatttttggtctcag
ttatgacgatcagaattgacaaactctaagcccaagatactttaacttctatgaagttaaccatctcaagtcttaacatcaagagggaaccttgtttctgcagATGTGGTTGAAATTGGAGCCATGGTAATGATCAGGAAAGAAGGTAGATACCTCAAGTCTTAGCATCAAGAAGGGACCTTGTTTCTGCAGATGTGTTT
GAAATGGTATTGATCAGGAAAGGCAGGAAAAGTGATCTGGCAAATTCCTGCATACAGTTGCAGTGGATAGTGGTAGTTTGTTATCGACTGCCACACGGGAGGAAGTTCTGTCGGAATGATTTAGTTATCATATTAAAGGACACACATCTTTTCAGACATAGATTAATGTGGAAAAGTAACTGTTGAATTTCTGCTGGCAT
CTGTTAGCTTCTTTTCTGCTTCTGTAATAGAAAGAAATCATCGCAAATTGTTTTTTTATGATAAACATGTGCTTTATCAATATTTTGATTATGATTGCTATGAATTCTAGCGTATTTGCCA
Intron 2 GTAAATAAAT ... GTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 10 | 11 | 4 |
| A2 | 52.63 | 9 | 8 | 12 |
| A3 | 42.11 | 11 | 8 | 8 |
| A4 | 76.47 | 2 | 7 | 6 |
| A5 | 86.67 | 1 | 12 | 1 |
| A6 | 50.62 | 40 | 44 | 38 |
| A7 | 54.17 | 44 | 59 | 45 |
| A8 | 48.42 | 49 | 50 | 42 |
| A9 | 58.65 | 43 | 61 | 61 |
| A10 | 52.94 | 32 | 49 | 23 |
>TRINITY_DN113142_c0_g2_i2 from sample A3 / Example spliced isoformACTAAATCTCCTGCTTTTATTGCCTACCTTTGTCAAAGGCTATATTACAAACATAGTTTTCAAATACTCATCTTCGTGTAGAATCCGTGGAGTGCGTAGAAAGAATTGTTGGAGTGTGAAAAGGGAAACATGAATATGAAATGAAATGGGCGAATTATCACGGTGGAATGCTAAGTATCAAATCGGACTGTAACGATCTC
CAGCAAAACCCTGTGCTAACACTATACTGAAAAGTTCTCAAGGGGAAACAAAATGAGTGGAGATATTGAAAAGGAGTTATTGAAGGCCCAAATCAGGGAGCTGAAGGATATGTGGCAGGTGGAATTGAGCCATAGACAAGCTCGAGAGGACCTTCTTGAATCAGAACTATTGGAGGTAAAAGAGTGTCTTTCGAATGCTG
AGAAAAGAGAGAAGAACGAAGTTGATCATCTTCGACGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATAATGTCTATGCCAGGTTTTGCATACACTGCATGTGGCATCAAATATGAAGAAGGCGTAGGATTTGTTGACAAAAAGGGCGTTCCCATGGCTGAGTGGTGTAAGGATCCT
AATTTTTCTCTATTTGAAAGTTCAAAGGTCAAAAGATGGGGGCAAAATTCAGATCCAAAATGTGAAGTGGACATGACAGGCCCTACAGAGCAGAGTGAACAGGAGTACGTTGAACAGATAGCTATGTCTGTGATGTTAGTGAATGATGTGATGGAGGTGCTTCTCAAAAGGACTATTATAGCTGAGACAGAGATTGCATT
GGAGAGGAAAAAGGCTAATGTAAGTCAGGATCAGGTGAAGAAGAAGGCACTGCAGATTGAGAACATGTGGGCACGAGTAGAAGAGATGGAGAGTATAGCCAAAGGAACCAGTGGGGTCTTACAGGAAATGCAGCAGAAGCTTGAACGTATGGAACAGGAGACTTCAAGGCAAAGACAACGTGCTACAGAAAATGAGCAGG
AACTGTCGAGGGTGAGGCACGATTTTGAGGTTTTAAGGTCTAATATTGATAATCTAACTGGTACAAGGGAGTCTCTGTTGTCATCTGAGAAACGATTCCAAGAAATGGAGAAAGTTTTGGAAAGGCTTACTTCCAAAGCTGCAAAATTGGAGGGTGCGAACAAGCAAAAAGATTTGGAAGTCTGTGACCTTTTAAAAACT
AATGATAGATTAAAAGCATCTCTGGATATTAAGGAGGCAGAATTGTCTGCTATGAGAGAACAGTGCAAGATTCTGGCAATACAATCTCAGAAAGTGAGAGAGAGTTGATAAAGTTACATCTACTGAGTTCCATTCAGAGCTGTATGTGGTTGAAATTGGAGCCATGGTAATGATCAGGAAAGAAGGTAGATACCTCAAGT
CTTAGCATCAAGAAGGGACCTTGTTTCTGCAGATGTGTTTGAAATGGTATTGATCAGGAAAGGCAGGAAAAGTGATCTGGCAAATTCCTGCATACAGTTGCAGTGGATAGTGGTAGTTTGTTATCGACTGCCACACGGGAGGAAGTTCTGTCGGAATGATTTAGTTATCATATTAAAGGACACACATCTTTTCAGACATA
GATTAATGTGGAAAAGTAACTGTTGAATTTCTGCTGGCATCTGTTAGCTTCTTTTCTGCTTCTGTAATAGAAAGAAATCATCGCAAATTGTTTTTTTATGATAAACATGTGCTTTATCAATATTTTGATTATGATTGCTATGAATTCTAGCGTATTTGCCA
>TRINITY_DN113142_c0_g2_i4 from sample A3 / Example unspliced isoform:ACTAAATCTCCTGCTTTTATTGCCTACCTTTGTCAAAGGCTATATTACAAACATAGTTTTCAAATACTCATCTTCGTGTAGAATCCGTGGAGTGCGTAGAAAGAATTGTTGGAGTGTGAAAAGGGAAACATGAATATGAAATGAAATGGGCGAATTATCACGGTGGAATGCTAAGTATCAAATCGGACTGTAACGATCTC
CAGCAAAACCCTGTGCTAACACTATACTGAAAAGTTCTCAAGGGGAAACAAAATGAGTGGAGATATTGAAAAGGAGTTATTGAAGGCCCAAATCAGGGAGCTGAAGGATATGTGGCAGGTGGAATTGAGCCATAGACAAGCTCGAGAGGACCTTCTTGAATCAGAACTATTGGAGGTAAAAGAGTGTCTTTCGAATGCTG
AGAAAAGAGAGAAGAACGAAGTTGATCATCTTCGACGGCGTGTCAAGACTGCAAATAATTTGTTGTCATTTTTGAAGTCCAAAGCAAGAATAATGTCTATGCCAGGTTTTGCATACACTGCATGTGGCATCAAATATGAAGAAGGCGTAGGATTTGTTGACAAAAAGGGCGTTCCCATGGCTGAGTGGTGTAAGGATCCT
AATTTTTCTCTATTTGAAAGTTCAAAGGTCAAAAGATGGGGGCAAAATTCAGATCCAAAATGTGAAGTGGACATGACAGGCCCTACAGAGCAGAGTGAACAGGAGTACGTTGAACAGATAGCTATGTCTGTGATGTTAGTGAATGATGTGATGGAGGTGCTTCTCAAAAGGACTATTATAGCTGAGACAGAGATTGCATT
GGAGAGGAAAAAGGCTAATGTAAGTCAGGATCAGGTGAAGAAGAAGGCACTGCAGATTGAGAACATGTGGGCACGAGTAGAAGAGATGGAGAGTATAGCCAAAGGAACCAGTGGGGTCTTACAGGAAATGCAGCAGAAGCTTGAACGTATGGAACAGGAGACTTCAAGGCAAAGACAACGTGCTACAGAAAATGAGCAGG
AACTGTCGAGGGTGAGGCACGATTTTGAGGTTTTAAGGTCTAATATTGATAATCTAACTGGTACAAGGGAGTCTCTGTTGTCATCTGAGAAACGATTCCAAGAAATGGAGAAAGTTTTGGAAAGGCTTACTTCCAAAGCTGCAAAATTGGAGGGTGCGAACAAGCAAAAAGATTTGGAAGTCTGTGACCTTTTAAAAACT
AATGATAGATTAAAAGCATCTCTGGATATTAAGGAGGCAGAATTGTCTGCTATGAGAGAACAGTGCAAGATTCTGGCAATACAATCTCAGAAAGTGAGAGAGAGTTGATAAAGTTACATCTACTGAGTTCCATTCAGAGCTGTgtaaataaatggtctgctcttaatttgtttccaagtttttattatttttggtctcag
ttatgacgatcagaattgacaaactctaagcccaagatactttaacttctatgaagttaaccatctcaagtcttaacatcaagagggaaccttgtttctgcagATGTGGTTGAAATTGGAGCCATGGTAATGATCAGGAAAGAAGGTAGATACCTCAAGTCTTAGCATCAAGAAGGGACCTTGTTTCTGCAGATGTGTTT
GAAATGGTATTGATCAGGAAAGGCAGGAAAAGTGATCTGGCAAATTCCTGCATACAGTTGCAGTGGATAGTGGTAGTTTGTTATCGACTGCCACACGGGAGGAAGTTCTGTCGGAATGATTTAGTTATCATATTAAAGGACACACATCTTTTCAGACATAGATTAATGTGGAAAAGTAACTGTTGAATTTCTGCTGGCAT
CTGTTAGCTTCTTTTCTGCTTCTGTAATAGAAAGAAATCATCGCAAATTGTTTTTTTATGATAAACATGTGCTTTATCAATATTTTGATTATGATTGCTATGAATTCTAGCGTATTTGCCA