sp|Q7XC57|MYBS3_ORYSJ ----> Transcription factor MYBS3

Intron 1 GTATTATTCT ... TTATTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	34.99	44.3	13.8	33.9
A2	32.01	27.7	5.8	20.4
A3	30.55	55.6	17.1	32.3
A4	30.19	22.6	6.1	13.6
A5	36.31	13.4	4.6	10.9
A6	37.33	167.9	52.8	148.3
A7	34.37	302.6	80	238.3
A8	36.96	240	67.3	215.3
A9	36.69	248.3	77.7	211
A10	30.85	291.1	81.2	179.6

>TRINITY_DN41326_c0_g1_i6 from sample A6 / Example spliced isoform

AATCATTAAGAGATCGTTGTTTTCAGTCGGTGGTTGTTCCCAGTGGCGCTGCACATCCCGTGGATAGATCGAGCGGAATCGGCGTTGCAGTTGAACACTGTGGCGGCAGGCATGATCCTCAGTCCAAGTATTGCGTCTGCATGGTCATGCAGTTACTGCTTCATCGCCATGTAGCTGGAGCTGGAGGGGATCCGAGGGGA
TGTAGTTACCTTTCATCACCACGTGGGGGAAGTTTCATCAATTGGCCGCAGGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAATATGACGCACAAGTGCTCAAACTGCGGCAACAACGGACACAACTCCAGGACTTATGCGGCGGGGTGAAGCTCTTAGGCGTTCACCTCATCGATGGCC
CGATCAGAAAGAACGTTAGCATGATTGGCCTCAAGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAAGATGACGCACAAGAGCTCGAACTGCGACAGCAGCAGACACAACTCCAGGACTTCTGCGGCGGGGTGAAGCTCTTCGACGTTCACCTCATCGATGGCCCAATCAGAAAGAATGCT
AGCATGGGGATTTTGATGGCGATGGAAAACCCTAGACCTCTCTGAACCAACCACTGCCGTGGCCACCAACGGTTATATCTCTCATGGCCTCGTGCAAGCCTCGACCTCCTCCAATTATCGTGAAAGGAAAAAAGCTGGATGATCTTGACTCAATTCTCTGCAAAATGTTCAAGAAAATGTTGCCTCTTCGGGCTTTGATG
TCTGTGATCATACCTTGAATCAAATCTTATAACTGATAATTGATGAGAAAAATGTTTTTTTGCTTTTAGTGGAAAATCGAAGGCTGCATTTGAGCGCTTAGTGATTGTTTTAAAGATCAATATTATATTTTCCAAATCTGGCCTTCTTCTTCTTCTTTTCCTGTGTTAATTCCTGCAATGCAAGCTTATAACATTTAATG
AGAATATTTATGTACTTAAAAATAAGGAAGATCCAGATTCAATTCTCTTCAAAGTGTTCAAGAAAATGTTGTATGTTCGGAGACTCTGATGTGGTGAAAGTGCCTAGGATCAGCAGATATTATAGCGCTGCACTTGCATGCTCTTTTTGTGTTTTAAAGATAATCTTTATCTTCTAAATCAGAGATCTTCTTCGTCTGTT
TCTGTGATCATGCCTAAGAATAAAAGCTTATGATTCTGGTATTTGATGATAAAATATTTATGTAG

>TRINITY_DN41326_c0_g1_i3 from sample A6 / Example unspliced isoform:

AATCATTAAGAGATCGTTGTTTTCAGTCGGTGGTTGTTCCCAGTGGCGCTGCACATCCCGTGGATAGATCGAGCGGAATCGGCGTTGCAGTTGAACACTGTGGCGGCAGGCATGATCCTCAGTCCAAGTATTGCGTCTGCATGGTCATGCAGTTACTGCTTCATCGCCATGTAGCTGGAGCTGGAGGGGATCCGAGGGGA
TGTAGTTACCTTTCATCACCACGTGGGGGAAGTTTCATCAgtattattcttctttctttgagttatatctctctttttacagcacaacttcctttccgcagattcttaccaggttgcatccatccgttgcagcacaatgcgcttttggattcctcaatttctttcttttgttttatttacagATTGGCCGCAGGATCAAA
TCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAATATGACGCACAAGTGCTCAAACTGCGGCAACAACGGACACAACTCCAGGACTTATGCGGCGGGGTGAAGCTCTTAGGCGTTCACCTCATCGATGGCCCGATCAGAAAGAACGTTAGCATGGGAAGTTTCATCAGTCTTCTTCTTCTTTCTTTGAG
TTATATCTCTCTTTTTATTCAAATGATAGCACGACTTCCTTTCCGCAGATTCTTACCAGGTTGCATCCATCCGTTGCAGCACAATGCGCTTTTGGATTCCTCAATTTCTTTCTTTTGTTTCATTTACAGATTGGCCTCAAGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAAGATGACGC
ACAAGAGCTCGAACTGCGACAGCAGCAGACACAACTCCAGGACTTCTGCGGCGGGGTGAAGCTCTTCGACGTTCACCTCATCGATGGCCCAATCAGAAAGAATGCTAGCATGGGGATTTTGATGGCGATGGAAAACCCTAGACCTCTCTGAACCAACCACTGCCGTGGCCACCAACGGTTATATCTCTCATGGCCTCGTG
CAAGCCTCGACCTCCTCCAATTATCGTGAAAGGAAAAAAGCTGGATGATCTTGACTCAATTCTCTGCAAAATGTTCAAGAAAATGTTGCCTCTTCGGGCTTTGATGTCTGTGATCATACCTTGAATCAAATCTTATAACTGATAATTGATGAGAAAAATGTTTTTTTGCTTTTAGTGGAAAATCGAAGGCTGCATTTGAG
CGCTTAGTGATTGTTTTAAAGATCAATATTATATTTTCCAAATCTGGCCTTCTTCTTCTTCTTTTCCTGTGTTAATTCCTGCAATGCAAGCTTATAACATTTAATGAGAATATTTATGTACTTAAAAATAAGGAAGATCCAGATTCAATTCTCTTCAAAGTGTTCAAGAAAATGTTGTATGTTCGGAGACTCTGATGTGG
TGAAAGTGCCTAGGATCAGCAGATATTATAGCGCTGCACTTGCATGCTCTTTTTGTGTTTTAAAGATAATCTTTATCTTCTAAATCAGAGATCTTCTTCGTCTGTTTCTGTGATCATGCCTAAGAATAAAAGCTTATGATTCTGGTATTTGATGATAAAATATTTATGTAG

Intron 2 GTTATATCTC ... TTATTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52.94	32	8	36
A2	48.89	23	2	22
A3	46.25	43	7	37
A4	41.67	21	9	15
A5	57.14	9	0	12
A6	53.85	138	27	161
A7	48.85	268	61	256
A8	52.82	209	51	234
A9	50.56	221	56	226
A10	44.39	243	52	194

>TRINITY_DN44714_c0_g1_i2 from sample A7 / Example spliced isoform

GCCGGATTATTTCTATGGTCGTTGTAGTAGTTAAGGGAGGTTATGGGATTGCTTATTATTAGTTTATCAGCCGTGAATCATTAAGAGATCGTTGTTTTCAGTCGGTGGTTGTTCCCAGTGGCGCTGCACATCCCGTGGATAGATCGAGCGGAATCGGCGTTGCAGTTGAACACTGTGGCGGCAGGCATGATCCTCAGTCC
AAGTATTGCGTCTGCATGGTCATGCAGTTACTGCTTCATCGCCATGTAGCTGGAGCTGGAGGGGATCCGAGGGGATGTAGTTACCTTTCATCGCCACGTGGGGGAAGTTTCATCAGTATTATTCTTCTTTCTTTGAATTGGCCGCAGGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAAT
ATGACGCACAAGTGCTCAAACTGCGGCAACAACGGACACAACTCCAGGACTTATGCGGCGGGGTGAAGCTCTTAGGCGTTCACCTCATCGATGGCCCGATCAGAAGGAACGTTAGCATGGGAAGTTTCATCAGTCTTCTTCTTCTTTCTTTGAGTTATATCTCTCTTTTTATTCAAATGATAGCACGACTTCCTTTCCGC
AGATTCTTACCAGGTTGCATCCATCCGTTGCAGCACAATGCGCTTTTGGATTCCTCAATTTCTTTCTTTTGTTTCATTTACAGATTGGCCTCAAGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAAGATGACGCACAAGAGCTCGAACTGCGACAGCAGCAGACACAACTCCAGGACTTC
TGCGGCGGGGTGAAGCTCTTCGACGTTCACCTCATCGATGGCCCAATCAGAAAGAATGCTAGCATGGGGATTTTGATGGCGATGGAAAACCCTAGACCTCTCTGAACCAACCACTGCCGTGGCCACCAACGGTTATATCTCTCATGGCCTCGTGCAAGCCTCGACCTCCTCCAATTATCGTGAAAGGAAAAAAGCTGGAT
GATCTTGACTCAATTCTCTGCAAAATGTTCAAGAAAATGTTGCCTCTTCGGGCTTTGATGTCTGTGATCATACCTTGAATCAAATCTTATAACTGATAATTGATGAGAAAAATGTTTTTTTGCTTTTAGTGGAAAATCGAAGGCTGTATTTGAGCGCTTAGTGATTGTTTTAAAGATCAATATTATATTTTCCAAATCTG
GGC

>TRINITY_DN44714_c0_g1_i1 from sample A7 / Example unspliced isoform:

GCCGGATTATTTCTATGGTCGTTGTAGTAGTTAAGGGAGGTTATGGGATTGCTTATTATTAGTTTATCAGCCGTGAATCATTAAGAGATCGTTGTTTTCAGTCGGTGGTTGTTCCCAGTGGCGCTGCACATCCCGTGGATAGATCGAGCGGAATCGGCGTTGCAGTTGAACACTGTGGCGGCAGGCATGATCCTCAGTCC
AAGTATTGCGTCTGCATGGTCATGCAGTTACTGCTTCATCGCCATGTAGCTGGAGCTGGAGGGGATCCGAGGGGATGTAGTTACCTTTCATCGCCACGTGGGGGAAGTTTCATCAGTATTATTCTTCTTTCTTTGAgttatatctctctttttacagcacaacttcctttccgcagattcttaccaggttgcatccatcc
gttgcagcacaatgcgcttttggattcctcaatttctttcttttgttttatttacagATTGGCCGCAGGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAATATGACGCACAAGTGCTCAAACTGCGGCAACAACGGACACAACTCCAGGACTTATGCGGCGGGGTGAAGCTCTTAGGCGT
TCACCTCATCGATGGCCCGATCAGAAGGAACGTTAGCATGGGAAGTTTCATCAGTCTTCTTCTTCTTTCTTTGAGTTATATCTCTCTTTTTATTCAAATGATAGCACGACTTCCTTTCCGCAGATTCTTACCAGGTTGCATCCATCCGTTGCAGCACAATGCGCTTTTGGATTCCTCAATTTCTTTCTTTTGTTTCATTT
ACAGATTGGCCTCAAGATCAAATCTTTGAAACCGATTTGAGTCCTCTTGAGAAAACATGATTGAAAAGATGACGCACAAGAGCTCGAACTGCGACAGCAGCAGACACAACTCCAGGACTTCTGCGGCGGGGTGAAGCTCTTCGACGTTCACCTCATCGATGGCCCAATCAGAAAGAATGCTAGCATGGGGATTTTGATGG
CGATGGAAAACCCTAGACCTCTCTGAACCAACCACTGCCGTGGCCACCAACGGTTATATCTCTCATGGCCTCGTGCAAGCCTCGACCTCCTCCAATTATCGTGAAAGGAAAAAAGCTGGATGATCTTGACTCAATTCTCTGCAAAATGTTCAAGAAAATGTTGCCTCTTCGGGCTTTGATGTCTGTGATCATACCTTGAA
TCAAATCTTATAACTGATAATTGATGAGAAAAATGTTTTTTTGCTTTTAGTGGAAAATCGAAGGCTGTATTTGAGCGCTTAGTGATTGTTTTAAAGATCAATATTATATTTTCCAAATCTGGGC