NA ----> NA
Intron 1 GTAAATGCTT ... CCATGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.81 | 46 | 14 | 2 |
| A2 | 24.73 | 35 | 18 | 5 |
| A3 | 16.67 | 40 | 13 | 3 |
| A4 | 36.36 | 7 | 6 | 2 |
| A5 | 44.83 | 8 | 9 | 4 |
| A6 | 18.13 | 149 | 33 | 33 |
| A7 | 21.76 | 214 | 77 | 42 |
| A8 | 19.78 | 286 | 85 | 56 |
| A9 | 21.63 | 212 | 67 | 50 |
| A10 | 26.92 | 133 | 62 | 36 |
>TRINITY_DN45270_c1_g4_i3 from sample A8 / Example spliced isoformATCCGAAATACCCCGTAATTGAGTTTTCGAGCTACAAATACTAAAATTCGAATATTGTTGGCCCTGTTCTAGTTTTCATATTCAGTTGAGAGAGGGAACATAATGTAAACATCATGGACGGGCACAGGCCTAGAAGAGCAGATTCCCTGAACGATAATCTCAATGGCAATGTGGATAGGCTGCTCGACTGCTTCAAGCGC
GGAAAGTCATACTGCACCAGCTCTCCAAAGTCTGTTCAGAAGGAGAAGACAAGGGATGTAGCCAGTACCAGCTATGGGCAGTCTTCGGGGAATATTCAGTATACTTCGTCCAGTTCCTTGAAACAGTTAACAGATTTGGAATATTCACCAACTCCTACAAAGAGGCATCAGAAGAATCATGGCAAACAAATTTCACCAGG
AGTATTCTATGGATCCCCAGATGGCAAGCCCTCAAAGAAACCTCCTCAACTGTTACGCCTGTTACATGAAATTCGTAAAGATCTAATAGAACAGAATGATCTGCCACCCAGAGTGGCAGTGTGGACAACTTTCCCACGACAGGACCAAGCGGTACAATTTGCAGAAAATCATGTTGATGTTTCTCTGTTTTCCTATCAAG
ATCATGTCAATGGGCAGCGCAGGTTCCTTGCTACAACATATGAAGAATTGTGGAGAAGGTATAAAAGCATGGACCATAAGTACCGTCATCACTATGAAGTCATTCGAGAGGGTTCACCTTGCCACCTGTATTTTGATTTGGAATATAATCGCACTCTAAATGTTGAGGCAAATGGAGTGGAAATGGTAGATCTATTGTTA
TCTGTTGTCTCTGATAGCATACATGACATATATGGTCTTCAGTTTGAAACTGAATGGACGATAGAGCTTGATTCTTCAACTACAGAAAAGTTTTCTCGCCATTTAATAATTCGTGTACCAAACGCTGCTTTCAAGGACAATTCACATGTGGGTGCTTTTGTTGGAGAGATATGTGCACGCATAGCCAGATTACGCGAGAT
AGATATAAAGTTCAAACAATTGTATATCCTAAAGGGGGATAGTTGTGCTGAAAGCCATAGTGGACTCTTCCTAGACTGTGCTGTCTATACTCGGAATCGCTGTTTCCGATTACCATTATCTTCCAAGGCAGGGAAAAATTCATTTCTACTGCCTACCAATCGTTTCAAATGTAAGGATATGAGCGAATACCAGATCTTCA
TGGAGTCACTTATATGTAGGATTGATGCCAATTGTGAGAGGTTGCTAACTTTTGATACTGAGGCTGCTGGCAACAGAGGAGGTATTACAGATATTGGACTTGCAGTGGATCGTGTCAAGCATACAAAAAGAGCTATTAGCTCTTTCTCATCAAGGCGTTCTCCTTTTCCAGCTGTTGATGCTTTTGTGGAATCTGTTGCT
TCTGTAGGAAATGTTCCAGGGCATATTCGAAGCTGGTATTGGTTCTCAGAACATGGCGTGATGGTATACAATATCGGTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCATGTGATGTATATCGTGGATTTCCGATCAGCATCTTACTATCAGAAGTGTCATGATCCTGACTGCAGAGGTTTTCG
GTCCCCATTACGTCCAATACCAGAGCACACCATTCCCCAGAACTTTCCAGTCTCAGGCTCTGAACAATTAGAGAATTATGCATGCGTTAACAACATTAGCAACGATCCCCGACTGCCACTTGCCATGAGGGACAAAGATAATTTCATACCTTATACTAATAATGCACCATCGGCATCAACCATTGAGGATGTATTTAATG
AATGCTCTGAGAAAGACATTTGGGAGGATGAAGCATGGTGGGAAGAAGTCATCAGCACTATGGAGGACATGGAAATCAAAAGGGGACCTTTAGAATCCACAAAACAGGAGCCTACAAGCACCACTGATGATGATGAGTGGTGGATGGCTGCTGAGCGAGAAGCTTCTGAACTTGAGAAATTGATAGCATAAAAGTAGTCT
GATAAAGTTTGCTTTATCTATTTTTAAAGAATGTATGGGTTGAAAAATGCATGTTACGACCAGCAGCATCCCTTGACTGTGTGAGAGAACTTGCATCTCCCATCTTCTGCACATTGCAATGTACAAATTGAACTCTAGGTCAGAAACATTTTAGTCCTTCATATTTTATTTTTCTTTGTCTTTGTGTACATCTGCGTTAA
CGAATAGAAAGTTTTCTAGCCTTTCGTATGGACACATTAATATATTGCAGTCACTTGATAGCCCCATTTCATATTTTCGAACTGAACGTATCTTACATAGATTGTGTGGGTGATTGTTTCCTGGTAGTCGGGCAAGCTGTCGCAGATTCAAATCCTTCAGATAATTAGCGAAAGTAAAACCTATATAATAGATTGTTGGA
AATTTATATTCGATATCTGATAGATTTTACAGATACACAATAATAGCCTTGCAATAAGCAGATATGCTTTAAAAGAAAAAATTCCTTGATA
>TRINITY_DN45270_c1_g4_i1 from sample A8 / Example unspliced isoform:CTGCTGGCAACAGAGGAGGTATTACAGATATTGGACTTGCAGTGGATCGTGTCAAGCATACAAAAAGAGCTATTAGCTCTTTCTCATCAAGGCGTTCTCCTTTTCCAGCTGTTGATGCTTTTGTGGAATCTGTTGCTTCTGTAGGAAATGTTCCAGGGCATATTCGAAGCTGGTATTGGTTCTCAGAACATGGCGTGATG
GTATACAATATCGGTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCATGTGATGTATATCGTGGATTTCCGATCAGCATCTTACTATCAGAAGTGTCATGATCCTGACTGCAGAGGTTTTCGGTCCCCATTACGTCCAATACCAGAGCACACCATTCCCCAGAACTTTCCAGTCTCAGGCTCTGA
ACAATTAGAGAATTATGCATGCGTTAACAACATTAGCAACGATCCCCGACTGCCACTTGCCATGAGGGACAAAGATAATTTCATACCTTATACTAATAATGCACCATCGGCATCAACCATTGAGGATGTATTTAATGAATGCTCTGAGAAAGACATTTGGGAGGATGAAGCATGGTGGGAAGAAGTCATCAGCACTATGG
AGGACATGGAAATCAAAAGGGGACCTTTAGAATCCACAAAACAGgtaaatgcttctttattccatgcagcttgtactatgttaatgccctgtctcttatcatatctggtattgtgtgttataaggaaatctaccgttagtgcttagtgattggcaaatagctggtaccctaattattaattagtgaacagatgtttgact
attcattcgtgtaagttgtaaatttaagctgaattccctagatccggttataaaaaccatcagaatcatagttccacccccatttactgcggaactatgccatggaactgtgcccctcggggttttggcccattttaagatgacccagatcatcgaaattgcaaaaaaataatttccgtcaccggcagggggcgatttga
gtgccagttatcacaggcctgaattctgttggttctaaatgtaccttaatgggtgttttatggtaccaagaacattacttttgaggtcattccactgaatttatttgtgcactgcccatgaacagGAGCCTACAAGCACCACTGATGATGATGAGTGGTGGATGGCTGCTGAGCGAGAAGCTTCTGAACTTGAGAAATTG
ATAGCATAAAAGTAGTCTGATAAAGTTTGCTTTATCTATTTTTAAAGAATGTATGGGTTGAAAAATGCATGTTACGACCAGCAGCATCCCTTGACTGTGTGAGAGAACTTGCATCTCCCATCTTCTGCACATTGCAATGTACAAATTGAACTCTAGGTCAGAAACATTTTAGTCCTTCATATTTTATTTTTCTTTGTCTT
TGTGTACATCTGCGTTAACGAATAGAAAGTTTTCTAGCCTTTCGTATGGACACATTAATATATTGCAGTCACTTGATAGCCCCATTTCATATTTTCGAACTGAACGTATCTTACATAGATTGTGTGGGTGATTGTTTCCTGGTAGTCGGGCAAGCTGTCGCAGATTCAAATCCTTCAGATAATTAGCGAAAGTAAAACCT
ATATAATAGATTGTTGGAAATTTATATTCGATATCTGATAGATTTTACAGATACACAATAATAGCCTTGCAATAAGCAGATATGCTTTAAAAGAAAAAATTCCTTGATA
Intron 2 GTTCCTTGCT ... TGTGGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.33 | 29 | 28 | 41 |
| A2 | 68.42 | 12 | 25 | 27 |
| A3 | 61.9 | 12 | 21 | 18 |
| A4 | 67.21 | 10 | 23 | 18 |
| A5 | 54.55 | 10 | 11 | 13 |
| A6 | 60 | 17 | 28 | 23 |
| A7 | 83.22 | 12 | 56 | 63 |
| A8 | 58.73 | 26 | 35 | 39 |
| A9 | 58.39 | 31 | 34 | 53 |
| A10 | 64.58 | 17 | 27 | 35 |
>TRINITY_DN125560_c0_g1_i9 from sample A1 / Example spliced isoformGGCATATTGAATGAAACTTCATTGTCAATAACCCGGAGGTTCGGTGTGGACCCACGGAGAAAAACACGATAGGCCCAAAAGCTGATCTATTACCAAAAATGTTTATCGAGCTCACGAATACAAATCAATCCGAAATACCCCGTAATTGAGTTTTCGAGCTACAAATACTAAAATTCGAATATTGTTGGCCCTGTTCTAGT
TTTCATATTCAGTTGAGAGAGGGAACATAATGTAAACATCATGGACGGGCACAGGCCTAGAAGAGCAGATTCCCTGAACGATAATCTCAATGGCAATGTGGATAGGCTGCTCGACTGCTTCAAGCGCGGAAAGTCATACTGCACCAGCTCTCCAAAGTCTGTTCAGAAGGAGAAGACAAGGGATGTAGCCAGTACCAGCT
ATGGGCAGTCTTCGGGGAATATTCAGTATACTTCGTCCAGTTCCTTGAAACAGTTAACAGATTTGGAATATTCACCAACTCCTACAAAGAGGCATCAGAAGAATCATGGCAAACAAATTTCACCAGGAGTATTCTATGGATCCCCATATGGCAAGCCCTCAAAGAAACCTCCTCAACTGTTACGCCTGTTACATGAAATT
CGTAAAGATCTAATAGAACAGAATGATCTGCCACCCAGAGTGGCAGTGTGGACAACTTTCCCACGACAGGACCAAGCGGTACAATTTGCAGAAAATCATGTTGATGTTTCTCTGTTTTCCTATCAAGATCATGTCAATGGGCAGCGCAGGTATAAAAGCATGGACCATAAGTACCGTCATCACTATGAAGTCATTCGAGA
GGGTTCACCTTGCCACCTGTATTTTGATTTGGAATATAATCGCACTCTAAATGTTGAGGCAAATGGAGTGGAAATGGTAGATCTATTGTTATCTGTTGTCTCTGATAGCATACATGACATATATGGTCTTCAGTTTGAAACTGAATGGACGATAGAGCTTGATTCTTCAACTACAGAAAAGTTTTCTCGCCATTTAATAA
TTCGTGTACCAAACGCTGCTTTCAAGGACAATTCACATGTGGGTGCTTTTGTTGGAGAGA
>TRINITY_DN125560_c0_g1_i5 from sample A1 / Example unspliced isoform:GGCATATTGAATGAAACTTCATTGTCAATAACCCGGAGGTTCGGTGTGGACCCACGGAGAAAAACACGATAGGCCCAAAAGCTGATCTATTACCAAAAATGTTTATCGAGCTCACGAATACAAATCAATCCGAAATACCCCGTAATTGAGTTTTCGAGCTACAAATACTAAAATTCGAATATTGTTGGCCCTGTTCTAGT
TTTCATATTCAGTTGAGAGAGGGAACATAATGTAAACATCATGGACGGGCACAGGCCTAGAAGAGCAGATTCCCTGAACGATAATCTCAATGGCAATGTGGATAGGCTGCTCGACTGCTTCAAGCGCGGAAAGTCATACTGCACCAGCTCTCCAAAGTCTGTTCAGAAGGAGAAGACAAGGGATGTAGCCAGTACCAGCT
ATGGGCAGTCTTCGGGGAATATTCAGTATACTTCGTCCAGTTCCTTGAAACAGTTAACAGATTTGGAATATTCACCAACTCCTACAAAGAGGCATCAGAAGAATCATGGCAAACAAATTTCACCAGGAGTATTCTATGGATCCCCATATGGCAAGCCCTCAAAGAAACCTCCTCAACTGTTACGCCTGTTACATGAAATT
CGTAAAGATCTAATAGAACAGAATGATCTGCCACCCAGAGTGGCAGTGTGGACAACTTTCCCACGACAGGACCAAGCGGTACAATTTGCAGAAAATCATGTTGATGTTTCTCTGTTTTCCTATCAAGATCATGTCAATGGGCAGCGCAGgttccttgctacaacatatgaagaattgtggagaagGTATAAAAGCATGGA
CCATAAGTACCGTCATCACTATGAAGTCATTCGAGAGGGTTCACCTTGCCACCTGTATTTTGATTTGGAATATAATCGCACTCTAAATGTTGAGGCAAATGGAGTGGAAATGGTAGATCTATTGTTATCTGTTGTCTCTGATAGCATACATGACATATATGGTCTTCAGTTTGAAACTGAATGGACGATAGAGCTTGATT
CTTCAACTACAGAAAAGTTTTCTCGCCATTTAATAATTCGTGTACCAAACGCTGCTTTCAAGGACAATTCACATGTGGGTGCTTTTGTTGGAGAGATATGTGCACGCATAGCCAGATTACGCGAGATAGATATAAAGTTCAAACAATTGTATATCCTAAAGGGGGATAGTTGTGCTGAAAGCCATAGTGGACTCTTCCTA
GACTGTGCTGTCTATACTCGGAATCGTTGTTTCCGATTACCATTATCTTCCAAGGCAGGGAAAAATTCATTTCTACTGCCTACCAATCGTTTCAAATGTAAGGATATGAGCGAATACCAGATCTTCATGGAGTCACTTATATGTAGGATTGATGCCAATTGTGAGAGGTTGCTAACTTTTGATACTGAGGCTGCTGGCAA
CAGAGGAGGTATTACAGATATTGGACTTGCAGTGGATCGTGTCAAGCATACAAAAAGAGCTATTAGCTCTTTCTCATCAAGGCGTTCTCCTTTTCCAGCTGTTGATGCTTTTGTGGAATCTGTTGCTTCTGTAGGAAATGTTCCAGGGCATATTCGAAGCTGGTATTGGTTCTCAGAACATGGCGTGATGGTATACAATA
TCGGTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCACGTGATGGTATACAATATCGGTGGAAATCGGTTTTGTGAAATCATTGGCAGGCAGCATAAGAGCAATCATGTGATGTATATCGTGGATTTCCGATCAGCATCTTACTATCAGAAGTGTCATGATCCTGACTGCAGAGGTTTTCGGTCC
CCATTACGTCCAATACCAGAGCACACCATTCCCCAGAACTTTCCAGTCTCAGGCTCTGAACAATTAGAGAATTATGCATGCGTTAACAACATTAGCAACGATCCCCGACTGCCACTTGCCATGAGGGACAAAGATAATTTCATACCTTATACTAATAATGCACCATCGGCATCAACCATTGAGGATGTATTTAATGAATG
CTCTGAGAAAGACATTTGGGAGGATGAAGCATGGTGGGAAGAAGTCATCAGCACTATGGAGGACATGGAAATCAAAAGGGGACCTTTAGAATCCACAAAACAGGAGCCTACAAGCACCACTGATGATGATGAGTGGTGGATGGCTGCTGAGCGAGAAGCTTCTGAACTTGAGAAATTGATAGCATAAAAGTAGTCTGATA
AAGTTTGCTTTATCTATTTTTAAAGAATGTATGGGTTGAAAAATGCATGTTACGACCAGCAGCATCCCTTGACTGTGTGAGAGAACTTGCATCTCCCATCTTCTGCACATTGCAATGTACAAATTGAACTCTAGGTCAGAAACATTTTAGTCCTTCATATTTTATTTTTCTTTGTCTTTGTGTACATCTGCGTTAACGAA
TAGAAAGTTTTCTAGCCTTTCGTATGGACACATTAATATATTGCAGTCACTTGATAGCCCAAA