NA ----> NA
Intron 1 GTCAGGGTTC ... CCTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.14 | 9 | 12 | 1.5 |
| A2 | 44.44 | 20 | 16 | 2 |
| A3 | 64.29 | 5 | 9 | 2.8 |
| A4 | 42.86 | 8 | 6 | 0.3 |
| A5 | 0 | 4 | 0 | 0 |
| A6 | 38.74 | 46.3 | 29.3 | 3 |
| A7 | 39 | 43 | 27.5 | 1.3 |
| A8 | 41.34 | 37.3 | 26.3 | 2.3 |
| A9 | 42.37 | 34 | 25 | 1 |
| A10 | 47.27 | 29 | 26 | 3 |
>TRINITY_DN110525_c0_g1_i8 from sample A2 / Example spliced isoformTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATG
GAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAG
GGACACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACAC
TGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTATTCTTTGCAGCAGATGATCTTGAATATC
AGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAAT
GAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGCTGATTTGTATATTCCTTAAGGGCTGCAAATTATTTAAAGAGAGCCTTCGGGTGCATATTACAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTT
TTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATA
TAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCATTTATATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTAT
ATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAGGTTCTTAATATTGAGTTTACATTGACAAATTTACAAGCATAGTATATATTATAATGTCC
>TRINITY_DN110525_c0_g1_i3 from sample A2 / Example unspliced isoform:TAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATG
GAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAG
GGACACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACAC
TGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTATTCTTTGCAGCAGATGATCTTGAATATC
AGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAAT
GAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGgtcagggttcattttcctcactttagtaggtagttatctgttcattctaacaatcatgataaaaaagtcttttatcatttaataattttttatggcttacactgttgaatttgagtcttctatgcacaaccctt
ttccagCTGATTTGTATATTCCTTAAGGGCTGCAAATTATTTAAAGAGAGCCTTCGGGTGCATATTACAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAAC
ATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTC
ATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCATTTATATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGA
TTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAGGTTCTTAATATTGAGTTTACATTGACAAATTTACAAGCATAGTATATATTATAATGTCC
Intron 2 GTAGTTATCT ... CATATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.67 | 11 | 5 | 3 |
| A2 | 60 | 4 | 8 | 4 |
| A3 | 44.83 | 8 | 8 | 5 |
| A4 | 20 | 2 | 0 | 1 |
| A5 | 11.11 | 4 | 0 | 1 |
| A6 | 24.14 | 22 | 1 | 13 |
| A7 | 46.15 | 14 | 1 | 23 |
| A8 | 26.03 | 27 | 6 | 13 |
| A9 | 30 | 21 | 5 | 13 |
| A10 | 56.25 | 7 | 10 | 8 |
>TRINITY_DN122498_c0_g2_i15 from sample A1 / Example spliced isoformTATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGG
AGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGA
AAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGTCAGGGTTCATTTTCCTCACTTTAGTAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAG
TAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGA
AAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGG
ATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAG
>TRINITY_DN122498_c0_g2_i9 from sample A1 / Example unspliced isoform:TATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGG
AGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGA
AAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGTCAGGGTTCATTTTCCTCACTTTAGTAGgtagttatctgttcattctaacaatcatgataaaaaagtcttttatcatttaataattttttatggcttacactgttgaatttgagtcttctatgcacaacccttttcc
agctgatttgtatattccttaagggctgcaaattatttaaagagagccttcgggtgcatattacagGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTATGTTGGTAAACTTCACTTCATCCTCAAATTCAGTGCTATGTACAATG
AGAATATGAATTTCTTCTCAGGGAAACTTCTCAAACCAATATTGTTGCCAGGAATTCTAACTTGTTTCTTTGTGTAGCTCTTGTTTTGCTTTCTAAGGATTTGTGGCGGTCATGTTCTGTTATGAAGAAGGGAGGGTGCATTTCTTATTGTTTCATGGTCATTCTTTCAAAATAGTAGGGATATTTGTTAGTTGTATGGA
GAGTCTATGCAAAATCGAAATGGAAATAAACTAGACTGAGGGGACAAAATATATTGTAAATGGTTAGAATTCTTTTATTTTAGATCGAGAAATACTTCATATTTACAGCCATGCCCACTCAAGGGATTTGGAACTGGGTCTCCACATCAATACAAGCTCAATCACCTCAATGTTTTCCGTTAGACCACACTCCCATGGGC
TAATAGTTAGAATTCTTTTTATTTATTTTTTGGTTTTGAACATACG
Intron 3 GTCAGGGTTC ... ACTTTAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.85 | 19.4 | 9 | 11 |
| A2 | 17 | 29.4 | 8 | 4 |
| A3 | 32.53 | 16.6 | 8 | 8 |
| A4 | 16 | 21 | 6 | 2 |
| A5 | 26.43 | 5.6 | 0 | 4 |
| A6 | 24.11 | 79.4 | 28 | 22 |
| A7 | 22.53 | 70.6 | 27 | 14 |
| A8 | 25.69 | 77.2 | 26 | 27 |
| A9 | 26.02 | 59 | 20 | 21 |
| A10 | 29.06 | 35.4 | 22 | 7 |
>TRINITY_DN122498_c0_g2_i11 from sample A1 / Example spliced isoformCAGGAATCAGTCCCAAGGGGGTTTGAGAACATTTAGACATGTTTCCCTATCACCAACAATAAATCTCTCGATTCGGAGTTAGTGCATGCCAACCCCAGGGGATGGGCAATGAAGGTGGAAAGAAGAAAAAAACAAGATTTGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTAT
GGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAG
AGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATA
AGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACA
AGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCA
TTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGC
>TRINITY_DN122498_c0_g2_i15 from sample A1 / Example unspliced isoform:TATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGG
AGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGA
AAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGgtcagggttcattttcctcactttagtagGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAG
TAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGA
AAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGG
ATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAG
Intron 4 GTGCTATGTG ... TGAATATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.94 | 16 | 20 | 16 |
| A2 | 85.51 | 5 | 29 | 30 |
| A3 | 65.85 | 7 | 16 | 11 |
| A4 | 75 | 6 | 23 | 13 |
| A5 | 100 | 0 | 5 | 5 |
| A6 | 63.41 | 45 | 73 | 83 |
| A7 | 69.66 | 27 | 64 | 60 |
| A8 | 71.43 | 20 | 51 | 49 |
| A9 | 67.71 | 31 | 74 | 56 |
| A10 | 63.93 | 22 | 40 | 38 |
>TRINITY_DN122498_c0_g2_i7 from sample A1 / Example spliced isoformTATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTC
TTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGA
CAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTT
TTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCCATAAAACGAGTAAGTAG
AAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAG
>TRINITY_DN122498_c0_g2_i1 from sample A1 / Example unspliced isoform:TATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGgtgctatgtgatgttttaaggtctggtggtctacccggaaagagtgatggttatcaaccaccattgttctttgcagcagatgatcttgaatatcagGG
AGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGA
AAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGA
GAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAA
GTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCATTTATATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCA
TATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAG
Intron 5 GTCAGATGCT ... ACAGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.03 | 50 | 11.9 | 11 |
| A2 | 19.35 | 50 | 10.6 | 12 |
| A3 | 14.58 | 41 | 8.8 | 7 |
| A4 | 15 | 34 | 6.3 | 6 |
| A5 | 8.89 | 41 | 15 | 4 |
| A6 | 12.17 | 101 | 15 | 14 |
| A7 | 6.82 | 82 | 13.1 | 6 |
| A8 | 13.95 | 37 | 6 | 6 |
| A9 | 13.27 | 98 | 9.1 | 15 |
| A10 | 16.19 | 88 | 7.3 | 17 |
>TRINITY_DN110525_c0_g1_i7 from sample A2 / Example spliced isoformTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATG
GAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTAGAGGGG
GTGATTATATGACTTATAATCTTTGAGAAATTTGTATTTGATGACCTTTTTGTGTTTCTACTCTAACATCTAGCTTAGATCAAAGTAGTTATTCACATGTGTTCTCTACTATTGTTGTAGTCTTTGATTTTCTCTTTTAATTTGATTCTTACTGTTGATGACACTACTATTCTCTCGGAAATGCTTTCCTTCACATGGGA
TATGTTTATATTTTCCATCAAATGATTAACAATGGAGACTAAATATTATGATTAGTGTTCAATACAATGTTGATGAAGTTCACTTGAGGTCGAGATAGGAG
>TRINITY_DN110525_c0_g1_i6 from sample A2 / Example unspliced isoform:TAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGgtcagatgctcgaactcttttaaaaaaagatg
tgtttatgcaatcagaatgctgcaaattctgaatttgatggaggaattggagtgtttattgacaatagatacagatgcagGCTCACATTTGGCATTGCCTTTGATATCGATGGAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACT
GCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGACACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGT
CTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGAC
TGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTATTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTT
GAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTA
TTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAA
ATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCATTTAT
ATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAGGTTCTTAATATTGAG
TTTACATTGACAAATTTACAAGCATAGTATATATTATAATGTCC
Intron 6 GTCAGGGTTC ... CATATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.95 | 21 | 9.8 | 5 |
| A2 | 14.64 | 30.1 | 12.4 | 5.3 |
| A3 | 22.97 | 16.8 | 7.4 | 5 |
| A4 | 7.81 | 21 | 4.7 | 1.9 |
| A5 | 20.53 | 5.8 | 0 | 1.7 |
| A6 | 17.15 | 82.8 | 23 | 17.9 |
| A7 | 24.44 | 72.6 | 21.4 | 23.4 |
| A8 | 17.44 | 80.2 | 20.4 | 17.7 |
| A9 | 20.54 | 61.7 | 19.9 | 16.3 |
| A10 | 18.08 | 35.2 | 21.1 | 7.8 |
>TRINITY_DN122498_c0_g2_i11 from sample A1 / Example spliced isoformCAGGAATCAGTCCCAAGGGGGTTTGAGAACATTTAGACATGTTTCCCTATCACCAACAATAAATCTCTCGATTCGGAGTTAGTGCATGCCAACCCCAGGGGATGGGCAATGAAGGTGGAAAGAAGAAAAAAACAAGATTTGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTAT
GGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAG
AGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATA
AGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACA
AGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCA
TTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGC
>TRINITY_DN122498_c0_g2_i9 from sample A1 / Example unspliced isoform:TATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCCCACATTTGGCATTGCCTTTGATATCGATGGAGT
CTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGAC
ACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAG
AACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGG
AGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGA
AAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGgtcagggttcattttcctcactttagtaggtagttatctgttcattctaacaatcatgataaaaaagtcttttatcatttaataattttttatggcttacactgttgaatttgagtcttctatgcacaacccttttcc
agctgatttgtatattccttaagggctgcaaattatttaaagagagccttcgggtgcatattacagGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTATGTTGGTAAACTTCACTTCATCCTCAAATTCAGTGCTATGTACAATG
AGAATATGAATTTCTTCTCAGGGAAACTTCTCAAACCAATATTGTTGCCAGGAATTCTAACTTGTTTCTTTGTGTAGCTCTTGTTTTGCTTTCTAAGGATTTGTGGCGGTCATGTTCTGTTATGAAGAAGGGAGGGTGCATTTCTTATTGTTTCATGGTCATTCTTTCAAAATAGTAGGGATATTTGTTAGTTGTATGGA
GAGTCTATGCAAAATCGAAATGGAAATAAACTAGACTGAGGGGACAAAATATATTGTAAATGGTTAGAATTCTTTTATTTTAGATCGAGAAATACTTCATATTTACAGCCATGCCCACTCAAGGGATTTGGAACTGGGTCTCCACATCAATACAAGCTCAATCACCTCAATGTTTTCCGTTAGACCACACTCCCATGGGC
TAATAGTTAGAATTCTTTTTATTTATTTTTTGGTTTTGAACATACG
Intron 7 GTTTTGCAGG ... TTTTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.36 | 5 | 14 | 15 |
| A2 | 75.9 | 10 | 30 | 33 |
| A3 | 67.65 | 11 | 16 | 30 |
| A4 | 66.67 | 7 | 12 | 16 |
| A5 | 74.36 | 5 | 14 | 15 |
| A6 | 75.78 | 31 | 93 | 101 |
| A7 | 72.73 | 30 | 79 | 81 |
| A8 | 64.6 | 20 | 30 | 43 |
| A9 | 71.31 | 34 | 77 | 92 |
| A10 | 80.26 | 15 | 58 | 64 |
>TRINITY_DN41041_c0_g1_i14 from sample A8 / Example spliced isoformTTTTATTTTCTGTTAAACCTTCGGGCGGATTAAGATTTAAACATTCCTACGTCTCCGAAGCCAGAGCAATGCTATAATTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTC
GTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATGGAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGT
GGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTC
AATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAA
CCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAAC
CAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTC
AAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGAGCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCA
GCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGTTTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTT
CCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCATATCTATGAAAGACAACTCACTAATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAGGTTCTTAATATTGAGTTTACATTGACAAATTTACAAGCATAGTATATATTATAATGTC
CATAATGGTTTAAATATTTGCAAGGATGAAGAAAGAAATTGAAAGATACATGCATTTGGTA
>TRINITY_DN41041_c0_g1_i20 from sample A8 / Example unspliced isoform:TTTTATTTTCTGTTAAACCTTCGGGCGGATTAAGATTTAAACATTCCTACGTCTCCGAAGCCAGAGCAATGCTATAATTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTC
GTCATTTACAACGTCGTCATTATTCTCTGCAAACTGAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATGGAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGT
GGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGGAAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGgttttgcagggacacacaccattcaaaaagcttttgaacagATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGA
TGAGTATGTGGCATACTTTGACAACATTGATCCTCTGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTT
TAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGTTATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAG
GATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAATGGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGCTGA
TTTGTATATTCCTTAAGGGCTGCAAATTATTTAAAGAGAGCCTTCGGGTGCATATTACAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGGTTGTTAACACCGTTGAAGATGCAGTAGACTATATTTTGAACAAACATTCAAGAGA
GCACTTAAAGTGTTAAAAGGTTGTCTGAGTTGCAAATATCTCAGAAGATTGATTTGTGCTTTTGGTGACTAGAAGGTATTAAATCTCTCATTTTTTCAATCCTCAGCGCTAGCTATGCTTGATTTAAATATAGATCTAGATTATTATTGGTTCTTTTGTTCATCTAAGAAAGGTATGAAATCAATAACTCATCTACAAGT
TTTTAGAATTGGTGAAAGTGTAAGTACCTTGTAAGTAGAAACAAAAATATAGCCATAAAATGATTTTGAATATGGCCATAAAACGAGTAAGTAGAAAATGATTTTCCTATATTGAAGATTTGCATCATGGTCATGGTACATCGGCTTCATCATCTTGAGTGGACATTGGATTCCACCATATCTATGAAAGACAACTCACT
AATGACAAACTATTCATCATTGGAGATGCCATCAACCTTTTCCCCAGGTTCTTAATATTGAGTTTACATTGACAAATTTACAAGCATAGTATATATTATAATGTCCATAATGGTTTAAATATTTGCAAGGATGAAGAAAGAAATTGAAAGATACATGCATTTGGTA
Intron 8 GTATGTTGGT ... CTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.04 | 6.5 | 12.4 | 14 |
| A2 | 70 | 2 | 2.6 | 3 |
| A3 | 78.03 | 2 | 8.4 | 5 |
| A4 | 68.63 | 3.5 | 6.8 | 2 |
| A5 | 100 | 0 | 2.8 | 2 |
| A6 | 55.35 | 16.5 | 19.6 | 19 |
| A7 | 68.69 | 10 | 28.8 | 14 |
| A8 | 39.27 | 24.5 | 18.2 | 13 |
| A9 | 59.84 | 12.5 | 19.4 | 14 |
| A10 | 54.19 | 9 | 14.4 | 6 |
>TRINITY_DN39592_c0_g1_i10 from sample A6 / Example spliced isoformTTTAAACATTCCTACGTCTCCGAAGCCAGAGCAATGCTATAATTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACT
GAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATGGAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGG
AAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGACACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTC
TGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGT
TATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAAT
GGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGGCAGGCCCACCTTGGTTCTCTATTCTCACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGCTCTTGT
TTTGCTTTCTAAGGATTTGTGGCGGTCATGTTCTGTTATGAAGAAGGGAGGGTGCATTTCTTATTGTTTCATGGTCATTCTTTCAAAATAGTAGGGATATTTGTTAGTTGTATGGAGAGTCTATGCAAAATCGAAATGGAAATAAACTAGACTGAGGGGACAAAATATATTGTAAATGGTTAGAATTCTTTTATTTTAGA
TCGAGAAATACTTCATATTTACAGCCATGCCCACTCAAGGGATTTGGAACTGGGTCTCCACATCAATACAAGCTCAATCACCTCAATGTTTTCCGTTAGACCACACTCCCATGGGCTAATAGTTAGAATTCTTTTTATTTATTTTTTGGTTTTGAACATACGTCTTATATTAACAAAGAAATATTGCCAAGGCAGAATAT
TAAAGCGGAG
>TRINITY_DN39592_c0_g1_i7 from sample A6 / Example unspliced isoform:TTTAAACATTCCTACGTCTCCGAAGCCAGAGCAATGCTATAATTAAATATCGGTCACGCATAACACCATTTCTTCAAACGTGCTTGTCCCTAAGCGAGCAGAGGATGACTTGTTTTGTGGCCAGGGCCATCAGGCCAAAATCTCAAAGCACTTCTCAGCTAGTTCGTCATTTACAACGTCGTCATTATTCTCTGCAAACT
GAAGCTCAAGGGCTCACATTTGGCATTGCCTTTGATATCGATGGAGTCTTATTACGCGGACGAACACCCATTGGAGGCGCTCCCCGGGCACTGCGACGCCTATATACAGATCCCTCCAATCCCACTGAACTGCGAGTGCCTTTTGTGTTCTTGACAAACGGAGGTGGTGTGCGAGAATCAATAAGAGCTTCTGAACTGGG
AAATCTCTTAGGTGTGCAAGTGTTGCCTCATCAGGTTTTGCAGGGACACACACCATTCAAAAAGCTTTTGAACAGATTCGGTAATGAGCTGGTCCTTGCTGTAGGAAAGGGAGAACCAGCAAATGTAATGTCTGAGTATGGTTTCAGGAAGGTTGTCTCTATGGATGAGTATGTGGCATACTTTGACAACATTGATCCTC
TGGCTCAATATAAATCCTGGTCAAGGCAAATCCCATCCCACACTGAGAACCATCATTCAAGGTTGCAAGGTCAACTTGATATTATATCAAAGCAAATAAAAGCAGCATTTGTTGTTAGCGACCCAGTTGACTGGGGCAGAGATATCCAGGTGCTATGTGATGTTTTAAGGTCTGGTGGTCTACCCGGAAAGAGTGATGGT
TATCAACCACCATTGTTCTTTGCAGCAGATGATCTTGAATATCAGGGAGCATTTGCTACTGAGCGGCTTGGTATGGGAGCCTTTCGTATTGCCCTTGAGAGCATTTTTAATAGGATTCATCATACTCCTTTGAGTTATAAGTCTTTTGGAAAACCAAATGCTATTGCTTTCAAAGATGCAGAGACTGTTTTACAGAAAAT
GGCCTTGGGCTTACCACCTAGCGACCAACATGAAACACCAAATGAGAAAGTAAATGTTCTTTATATGATAGGGGATAATCCCACTGTTGACATATATGGTGTACACCAGCTGATTTGTATATTCCTTAAGGGCTGCAAATTATTTAAAGAGAGCCTTCGGGTGCATATTACAGGCAGGCCCACCTTGGTTCTCTATTCTC
ACAAGGACAGGGTGCTTCAAGATGGAAGGAAACCATGAGCGTTTTCCAGCGGATTTGgtatgttggtaaacttcacttcatcctcaaattcagtgctatgtacaatgagaatatgaatttcttctcagggaaacttctcaaaccaatattgttgccaggaattctaacttgtttctttgtgtagCTCTTGTTTTGCTTTC
TAAGGATTTGTGGCGGTCATGTTCTGTTATGAAGAAGGGAGGGTGCATTTCTTATTGTTTCATGGTCATTCTTTCAAAATAGTAGGGATATTTGTTAGTTGTATGGAGAGTCTATGCAAAATCGAAATGGAAATAAACTAGACTGAGGGGACAAAATATATTGTAAATGGTTAGAATTCTTTTATTTTAGATCGAGAAAT
ACTTCATATTTACAGCCATGCCCACTCAAGGGATTTGGAACTGGGTCTCCACATCAATACAAGCTCAATCACCTCAATGTTTTCCGTTAGACCACACTCCCATGGGCTAATAGTTAGAATTCTTTTTATTTATTTTTTGGTTTTGAACATACGTCTTATATTAACAAAGAAATATTGCCAAGGCAGAATATTAAAGCGGA
G