sp|F4KA50|LRL22_ARATH ----> LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2
Intron 1 GTAGAGTTAG ... TGTTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.39 | 26 | 4 | 11 |
| A2 | 20.93 | 34 | 3 | 15 |
| A3 | 28.95 | 27 | 11 | 11 |
| A4 | 25 | 42 | 10 | 18 |
| A5 | 16.67 | 15 | 2 | 4 |
| A6 | 45.45 | 21 | 19 | 16 |
| A7 | 33.88 | 40 | 26 | 15 |
| A8 | 42.86 | 32 | 30 | 18 |
| A9 | 49.33 | 19 | 18 | 19 |
| A10 | 36.45 | 34 | 15 | 24 |
>TRINITY_DN41880_c1_g3_i7 from sample A8 / Example spliced isoformAAAAATTAGAAAGTTTTCTGGCTTTGCCCTTATATCAAGGTTCCAAGTAGAAACTCTACATGGTGGATTTTCTTGGCCTGCAAGAGCTGGGTTCTAATACCAGGTTGTCCGGATCGAGAAGGATTTCCCTGTGGCAGCTAGGATAAAACCGCTTTTCAGTACAAAATTCGGTCTCTGCTGATCCAGAGAAAGTCCCACCT
TGCTCTGAAGCCTGGCCTTCACAGTGGCAATGGTTTTTTAGAGGAGTCAACGCCAGGGTTGGGGTTTTCCCTCAGAAGGATTTCACAAATATGGGCACTATTTCTCTTGCAGGCGAATTGATAAACAGTCAGGTAGTAGTTGCTCGTTTTTTGGGTTTTTTATTTTCCAATTTGGTTTAGAGATCCTTAAAACCTGCAGA
CCTGTCAATTGCGCGTGATAAAAACGTCGTTCTCATCAAACTTCTTGGCTAGGGTTTCGAGCTGAAAGACAAAGTGTTTCGTTAAAGAGGAGCTGCTGACTGGAAAGAGAAACCGGGAAGACTGCTTTCTCCTGCGGAAACTGCTGCAGCGATGTCGCATTGAACCCTACGTCAGGGCCATGATTTTTGGCCCTTACATG
GCTTGCAGGAGCCCTGTCTGGGCAAGGGTTTTATTATAGTTGTCAATGATTTCATCCTACCTGGTGGAATTGCCTTCCTAGGGCCAGAATCGTCTCATTTGGTGGCCGAGTGCTCTAGTTTGGAGAGGGATCCGACATCGACAAAGCAGTGGGTATGCCCGAGATAGGCAGGACTCTTGAGCTGGAGGTCATCGGATCAA
AACTGCTCCAAGAAATCTCCCACCGTGAAACCCTCTGCCACTGAAGGCGGTCTGAAGCGTAGACCTCTTTGTAGGGAAGGGAGCTCCTCTGTTACTATAGATCTCGAGGCTTGGTCTCGAAAGAAGGGCCCATAATGGTTTTCAACAGTTTCAGTCGCTAGGGTTTGACAGGGTAGAGCACAACGCAACAGATTATTTTG
AATACCGCCTTGATTGGAGGTTTTAGCAGTTTGAATGCTTGCTGGATTTATCATTTGAAGCTCCAAAGCACAAGTCAAAGAAGATTGGTCAGAAGCAAACAGCTGCTTAAGCGTATCTACAGGGAATGGAAATGGAGCGTATCTACAGGGAATGGAAATGGAGGAGTTATAATTTCAATGCCTCCTCCTACTAACATGAC
TTTGGTCATGGAAGGATTCGGTGAATTGTATTGAACAGGATGCAGCTAATCTCAATCTTTTTTTGCTATATCTTGATCTTCCTTTGTCATGTTTCCTTTTCTTAGATTCCCAAACTCACCCTTCTCCACCTGCTTAAATGCCCACGCTGATAGTATAATTTGCTTGATCTACTCTCTCTATTACTAAAATCAATGTTCTT
TCTTCCCCACCATCTTCATAACTAATATACCATAGCTGTAAACATCACATTCTCAATGACAGGGGCATACGTTTATACCATATATCTCTGGGGCAGCGGAACCTAGTGTGCCTCCATGAGTTGCGGAGATGTAACTTACTTTCTATCCGATATCTTCGCTAGACCAAAATCTGCAACTTTGGGCGAAATGTCGGCTTGAA
AAAGAAGATTGTAGAGCTTTATATCACAATCTAAGATGCGATACAACGAGTTATACCAACTGTTTCCAATCCAATCCAATCCAATCCAATCCTATCTCTCGGTGATGATCTCCACGGATATTCTTGGTCAGGGAAGCATGTATTCAAACATCTTCATACATTAAAGCTTATTTGGATCCCTGGGAATAATAACCCAGGAC
ACCACTCTAGGGTTCACCCTATTTCTATTTATCCAAAATCTCTTCCTTTCTAAACTGTTCCAACACCTCATTGGCCTAAATCCTCTATTTATCCTGAGAAAGATTGAAAAATTCACCTTTGATTAACCAATTGTAGCAGGCAAGGAATCGTGGGTGGATCAACAGAGGAATCACGTATGTAATCTTGGGCGAATTGAAGG
GTTCAGTTTATAAAGGGAAGCTTCCGAGAGGTCTATTTTGGATGAATTGCAAGAAAGTGAAAAGGCAAACCATCGCTGAAGTGGCTACAGTGGTCTTTTGGGTTACTGAAGTAGCTATGGTGGTCTCTTGGGTTCTTGTTTCTAGGATCCAGAAGAGTTTTGATGTATGAATAGATGGCCATTGATTCCCTGATAAGTAT
ATAATGGAGGCCATGAGTACGAGTTGGATTGGAAACAATTGTTTTCCAAGCCTCATGGTGTTCTTTTCTTTTCCTGCTCTTTGCCAAAAGTTGGAGATTTTGGCCATCTCTTAGGTTCAAGATGTGGTTAAGAATGTGATGTTTACAGCTATGGTATGTTAGATATGCAGATGGTGGAGAAGAAAGAACATTGATTTTCG
CAATAAAGAAAGTAGATCAAGCAAATTCTACTATCACAGTGGGCATTTAAGCAAGGGGAGAAGGGTAAGTTTGGGAATCTGATAAAAGGCAACATGGTAAAGAATGACCGAGACATAGCAAAAACAAGTTTTTGCTGGACCGTGCTGCATTCACTTCCACTTCAATGCATCTCGCCTTCTTTCCATGAGCAAAGTCATCC
AGATGTTACAATGCAGCGTTGACATTTCCATTCCAGATTCCTATGCAGCGTTCTGCCTCTGCCCAATATTCCTTAACTCATGCTTTGGAGGCTTAAATTATGAATATGCAACTATTCACACTGCCAGATCCTCATAACCTCCTATTAAGGTAGTGTACAAAATTACTGAGTTGTGGTAGCGGTAAATTAATGAAAGTCTA
TCACAATTAAGCTAGGATATTGTCTACAAATCCAAGCCACACTTCTAGCATTGTAGATTGTATTGAGTAGTTGAATAAAATTTCGACTTCTGCACACTTGTCTATTCATTCATAAGATATTTGATTTTTTA
>TRINITY_DN41880_c1_g3_i2 from sample A8 / Example unspliced isoform:AAAAATTAGAAAGTTTTCTGGCTTTGCCCTTATATCAAGGTTCCAAGTAGAAACTCTACATGGTGGATTTTCTTGGCCTGCAAGAGCTGGGTTCTAATACCAGGTTGTCCGGATCGAGAAGGATTTCCCTGTGGCAGCTAGGATAAAACCGCTTTTCAGTACAAAATTCGGTCTCTGCTGATCCAGAGAAAGTCCCACCT
TGCTCTGAAGCCTGGCCTTCACAGTGGCAATGGTTTTTTAGAGGAGTCAACGCCAGGGTTGGGGTTTTCCCTCAGAAGGATTTCACAAATATGGGCACTATTTCTCTTGCAGGCGAATTGATAAACAGTCAGGGTTTCGAGCTGAAAGACAAAGTGTTTCGTTAAAGAGGAGCTGCTGACTGGAAAGAGAAACCGGGAAG
ACTGCTTTCTCCTGCGGAAACTGCTGCAGCGATGTCGCATTGAACCCTACGTCAGGGCCATGATTTTTGGCCCTTACATGGCTTGCAGGAGCCCTGTCTGGGCAAGGGTTTTATTATAGTTGTCAATGATTTCATCCTACCTGGTGGAATTGCCTTCCTAGGGCCAGAATCGTCTCATTTGGTGGCCGAGTGCTCTAGTT
TGGAGAGGGATCCGACATCGACAAAGCAGTGGGTATGCCCGAGATAGGCAGGACTCTTGAGCTGGAGGTCATCGGATCAAAACTGCTCCAAGAAATCTCCCACCGTGAAACCCTCTGCCACTGAAGGCGGTCTGAAGCGTAGACCTCTTTGTAGGGAAGGGAGCTCCTCTGTTACTATAGATCTCGAGGCTTGGTCTCGA
AAGAAGGGCCCATAATGGTTTTCAACAGTTTCAGTCGCTAGGGTTTGACAGGGTAGAGCACAACGCAACAGATTATTTTGAATACCGCCTTGATTGGAGGTTTTAGCAGTTTGAATGCTTGCTGGATTTATCATTTGAAGCTCCAAAGCACAAGTCAAAGAAGATTGGTCAGAAGCAAACAGCTGCTTAAGCGTATCTAC
AGGGAATGGAAATGGAGCGTATCTACAGGGAATGGAAATGGAGGAGTTATAATTTCAATGCCTCCTCCTACTAACATGACTTTGGTCATGGAAGGATTCGGTGAATTGTATTGAACAGGATGCAGCTAATCTCAATCTTTTTTTGCTATATCTTGATCTTCCTTTGTCATGTTTCCTTTTCTTAGATTCCCAAACTCACC
CTTCTCCACCTGCTTAAATGCCCACGCTGATAGTATAATTTGCTTGATCTACTCTCTCTATTACTAAAATCAATGTTCTTTCTTCCCCACCATCTTCATAACTAATATACCATAGCTGTAAACATCACATTCTCAATGACAGGGGCATACGTTTATACCATATATCTCTGGGGCAGCGGAACCTAGTGTGCCTCCATGAG
TTGCGGAGATGTAACTTACTTTCTATCCGATATCTTCGCTAGACCAAAATCTGCAACTTTGGGCGAAATGTCGGCTTGAAAAAGAAGATTGTAGAGCTTTATATCACAATCTAAGATGCGATACAACGAGTTATACCAACTGTTTCCAATCCAATCCAATCCAATCCAATCCTATCTCTCGGTGATGATCTCCACGGATA
TTCTTGGTCAGGGAAGCATGTATTCAAACATCTTCATACATTAAAGCTTATTTGGATCCCTGGGAATAATAACCCAGGACACCACTCTAGGGTTCACCCTATTTCTATTTATCCAAAATCTCTTCCTTTCTAAACTGTTCCAACACCTCATTGGCCTAAATCCTCTATTTATCCTGAGAAAGATTGAAAAATTCACCTTT
GATTAACCAATTGTAGCAGGCAAGGAATCGTGGGTGGATCAACAGAGGAATCACGTATGTAATCTTGGGCGAATTGAAGGGTTCAGgtagagttagacgattcttcgataactccaatttttctgtaatgctggtatctaaaactcatccattgtttatgtttgtttatattcgtttgtttatattcattggttatgttt
gtttatattcgatatattgtaaaacctttgttgaacagTTTATAAAGGGAAGCTTCCGAGAGGTCTATTTTGGATGAATTGCAAGAAAGTGAAAAGGCAAACCATCGCTGAAGTGGCTACAGTGGTCTTTTGGGTTACTGAAGTAGCTATGGTGGTCTCTTGGGTTCTTGTTTCTAGGATCCAGAAGAGTTTTGATGTAT
GAATAGATGGCCATTGATTCCCTGATAAGTATATAATGGAGGCCATGAGTACGAGTTGGATTGGAAACAATTGTTTTCCAAGCCTCATGGTGTTCTTTTCTTTTCCTGCTCTTTGCCAAAAGTTGGAGATTTTGGCCATCTCTTAGGTTCAAGATGTGGTTAAGAATGTGATGTTTACAGCTATGGTATGTTAGATATGC
AGATGGTGGAGAAGAAAGAACATTGATTTTCGCAATAAAGAAAGTAGATCAAGCAAATTCTACTATCACAGTGGGCATTTAAGCAAGGGGAGAAGGGTAAGTTTGGGAATCTGATAAAAGGCAACATGGTAAAGAATGACCGAGACATAGCAAAAACAAGTTTTTGCTGGACCGTGCTGCATTCACTTCCACTTCAATGC
ATCTCGCCTTCTTTCCATGAGCAAAGTCATCCAGATGTTACAATGCAGCGTTGACATTTCCATTCCAGATTCCTATGCAGCGTTCTGCCTCTGCCCAATATTCCTTAACTCATGCTTTGGAGGCTTAAATTATGAATATGCAACTATTCACACTGCCAGATCCTCATAACCTCCTATTAAGGTAGTGTACAAAATTACTG
AGTTGTGGTAGCGGTAAATTAATGAAAGTCTATCACAATTAAGCTAGGATATTGTCTACAAATCCAAGCCACACTTCTAGCATTGTAGATTGTATTGAGTAGTTGAATAAAATTTCGACTTCTGCACACTTGTCTATTCATTCATAAGATATTTGATTTTTTA
Intron 2 GTAGTAGTTG ... TCTTGGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.92 | 3 | 12 | 8 |
| A2 | 64.98 | 5.9 | 13 | 9 |
| A3 | 55.3 | 13.1 | 11 | 20 |
| A4 | 70.3 | 6.5 | 11 | 19 |
| A5 | 85.71 | 1 | 6 | 6 |
| A6 | 53.43 | 8.5 | 6 | 13 |
| A7 | 55.51 | 9.3 | 10.8 | 12 |
| A8 | 56.63 | 4.7 | 5 | 7 |
| A9 | 26.96 | 8.4 | 2 | 3 |
| A10 | 60.96 | 6.6 | 5 | 15 |
>TRINITY_DN122648_c0_g6_i1 from sample A1 / Example spliced isoformTTTTGAACAAAATACATATTAAAAAATTAGAAAGTTTTCTGGCTTTGCCCTTATATCAAGGTTCCAAGTAGAAACTCTACATGGTGGATTTTCTTGGCCTGCAAGAGCTGGGTTCTAATACCAGGTTGTCCGGATCGAGAAGGATTTCCCTGTGGCAGCTAGGATAAAACCGCTTTTCAGTACAAAATTCGGTCTCTGCT
GATCCAGAGAAAGTCCCACCTTGCTCTGAAGCCTGGCCTTCACAGTGGCAATGGTTTTTTAGAGGAGTCAACGCCAGGGTTGGGGTTTTCCCTCAGAAGGATTTCACAAATATGGGCACTATTTCTCTTGCAGGCGAATTGATAAACAGTCAGGGTTTCGAGCTGAAAGAC
>TRINITY_DN122648_c0_g6_i2 from sample A1 / Example unspliced isoform:TTTTGAACAAAATACATATTAAAAAATTAGAAAGTTTTCTGGCTTTGCCCTTATATCAAGGTTCCAAGTAGAAACTCTACATGGTGGATTTTCTTGGCCTGCAAGAGCTGGGTTCTAATACCAGGTTGTCCGGATCGAGAAGGATTTCCCTGTGGCAGCTAGGATAAAACCGCTTTTCAGTACAAAATTCGGTCTCTGCT
GATCCAGAGAAAGTCCCACCTTGCTCTGAAGCCTGGCCTTCACAGTGGCAATGGTTTTTTAGAGGAGTCAACGCCAGGGTTGGGGTTTTCCCTCAGAAGGATTTCACAAATATGGGCACTATTTCTCTTGCAGGCGAATTGATAAACAGTCAGgtagtagttgctcgttttttgggttttttattttccaatttggttta
gagatccttaaaacctgcagacctgtcaattgcgcgtgataaaaacgtcgttctcatcaaacttcttggctagGGTTTCGAGCTGAAAGACAAAGTGTTTCGTTAAAGAGGAGCTGCTGACTGGAAAGAGAAACCGGGAAGACTGCTTTCTCCTGCGGAAACTGCTGCAGCGATGTCGCATTGAACCCTACGTCAGGGCC
ATGATTTTTGGCCCTTACATGGCTTGCAGGAGCCCTGTCTGGGCAAGGGTTTTATTATAGTTGTCAATGATTTCATCCTACCTGGTGGAATTGCCTTCCTAGGGCCAGAATCGTCTCATTTGGTGGCCGAGTGCTCTAGTTTGGAGAGGGATCCGACATCGACAAAGCAGTGGGTATGCCCGAGATAGGCAGGACTCTTG
AGCTGGAGGTCATCGGATCAAAACTGCTCCAAGAAATCTCCCACCGTGAAACCCTCTGCCACTGAAGGCGGTCTCAAGCGTAGACCTCTTTGTAGGGAAGGGAGCTCCTCTGTTACTATAGATCTCGAGGCTTGGTCTCGAAAGAAGGGCCCATAATGGTTTTCAACAGTTTCAGTCGCTAGGGTTTGACAGGGTAGAGC
ACAACGCAACAGATTATTTTGAATACCGCCTTGATTGGAGGTTTTAGCAGTTTGAATGCTTGCTGGATTTATCATTTGAAGCTCCAAAGCACAAGTCAAAGAAGATTGGTCAGAAGCAAACAGCTGCTTAAGCGTATCTACAGGGAATGGAAATGGAGCGTATCTACAGGGAATGGAAATGGAGGAGTTATAATTTCAAT
GCCTCCTCCTACTAACATGACTTTGGTCATGGAAGGATTCGGTGAATTGTATTGAACAGGATGCAGCTAATCTCAATCTTTTTTTGCTATATCTTGATCTTCCTTTGTCATGTTTCCTTTTCTTAGATTCCCAAACTCACCCTTCTCCACCTGCTTAAATGCCCACGCTGATAGTATAATTTGCTTGATCTACTCTCTCT
ATTACTAAAATCAATGTTCTTTCTTCCCCACCATCTTCATAACTAATATACCATAGCTGTAAACATCACATTCTCAATGACAGGGGCATACGTTTATACCATATATCTCTGGGGCAGCGGAACCTAGTGTGCCTCCATGAGTTGCGGAGATGTAACTTACTTTCTATCCGATATCTTCGCTAGACCAAAATCTGCAACTT
TGGGCGAAATGTCGGCTTGAAAAAGAAGATTGTAGAGCTTTATATCACAATCTAAGATGCGATACAACGAGTTATACCAACTGTTTCCAATCCAATCCAATCCAATCCAATCCTATCTCTCGGTGATGATCTCCACGGATATTCTTGGTCAGGGAAGCATGTATTCAAACATCTTCATACATTAAAGCTTATTTGGATCC
CTGGGAATAATAACCCAGGACACCACTCTAGGGTTCACCCTATTTCTATTTATCCAAAATCTCTTCCTTTCTAAACTGTTCCAACACCTCATTGGCCTAAATCCTCTATTTATCCTGAGAAAGATTGAAAAATTCACCTTTGATTAACCAATTGTAGCAGGCAAGGAATCGTGGGTGGATCAACAGAGGAATCACGTATG
TAATCTTGGGCGAATTGAAGGGTTCAGTTTATAAAGGGAAGCTTCCGAGAGGTCTATTTTGGATGAATTGCAAGAAAGTGAAAAGGCAAACCATCGCTGAAGTGGCTACAGTGGTCTTTTGGGTTACTGAAGTAGCTATGGTGGTCTCTTGGGTTCTTGTTTCTAGGATCCAGAAGAGTTTTGATGTATGAATAGATGGC
CATTGATTCCCTGATAAGTATATAATGGAGGCCATGAGTACGAGTTGGATTGGAAACAATTGTTTTCCAAGCCTCATGGTGTTCTTTTCTTTTCCTGCTCTTTGCCAAAAGTTGGAGATTTTGGCCATCTCTTAGGTTCAAGATGTGGTTAAGAATGTGATGTTTACAGCTATGGTATGTTAGATATGCAGATGGTGGAG
AAGAAAGAACATTGATTTTCGCAATAAAGAAAGTAGATCAAGCAAATTCTACTATCACAGTGGGCATTTAAGCAAGGGGAGAAGGGTAAGTTTGGGAATCTGATAAAAGGCAACATGGTAAAGAATGACCGAGACATAGCAAAAACAAGTTTTTGCTGGACCGTGCTGCATTCACTTCCACTTCAATGCATCTCGCCTTC
TTTCCATGAGCAAAGTCATCCAGATGTTACAATGCAGCGTTGACATTTCCATTCCAGATTCCTATGCAGCGTTCTGCCTCTGCCCAATATTCCTTAACTCATGCTTTGGAGGCTTAAATTATGAATATGCAACTATTCACACTGCCAGATCCTCATAACCTCCTATTAAGGTAGTGTACAAAATTACTGAGTTGTGGTAG
CGGTAAATTAATGAAAGTCTATCACAATTAAGCTAGGATATTGTCTACAAATCCAAGCCACT