sp|Q8S8S2|LPCT2_ARATH ----> Lysophospholipid acyltransferase LPEAT2
Intron 1 GTTTGTTTTG ... CTGGGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.75 | 21 | 6 | 5 |
| A2 | 17.07 | 17 | 5 | 2 |
| A3 | 24.32 | 14 | 6 | 3 |
| A4 | 22.45 | 19 | 4 | 7 |
| A5 | 28.57 | 5 | 4 | 0 |
| A6 | 24.32 | 14 | 7 | 2 |
| A7 | 11.11 | 24 | 6 | 0 |
| A8 | 3.23 | 15 | 1 | 0 |
| A9 | 3.85 | 25 | 2 | 0 |
| A10 | 11.76 | 30 | 8 | 0 |
>TRINITY_DN114040_c0_g2_i5 from sample A1 / Example spliced isoformCAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAGTATGTAACCATGTCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTCCCTAGTATTGTTGCATCAGAAACACATGACAAGATCCCAGTTGTAGGGACGATTAT
AAGGACTACGCAGGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGATTTAAATGCAGAGAAAGGCTTCTTGCAATGATTTTCCACGTGTGCTGTTATTTCCAGAGGGGACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGG
TTCAACCAGTTGTAATTCGGTATCCTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGTGGAGTATCTTCCAGTCATTTTTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCA
AAGGCAATTAATGTTGTCCAAACAGAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAATGGAAAGGTTATTCGAACTAAGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCAAGTGGGTG
TGTTAACATGGATAATTTCCTGGCTGGGCTGGGCTTTCCAAGAACTCCATTCTCTGAGCAGATATTTTGCTTCTATGACATGGAAAGTCAAGGGTCAATTACATTCAGTGAGTACTTATGTGGTTCAATGTGTATCCGGAAACGACCAAAGTTTCCTCTAGTGTGTGAATTGGCATTTAAATACTGTGACATAGAGGGAA
ACCATACTCTTTCAAAAGAGCAGGTTGAGCAAACATTGAAACTGGTTTTCCCATGTATTTCTGAAGACAATGTATATCAAATTTTTAAGCTTTTTGATGTTGACAATGATGAGGCAGTGAGCTGGGATGACTTTAAGATATGTTTGGAAAGGAATCCTGTATTTATTTCATTATTTTGTGCGCTGATTGATAAAAATGGC
TTGGGTGTCGAGAAGGCTTAGTAGAAACTAGCTTTAATCATTGAGAATTTGATTTCAAGGCAATCTGCCAAGTTTGTAACATAGGATATGCTACAATTTGAGAGTTTTGATTGAGTTGCAAATAACCAAGTTCTTCATTCATTTGTTATTAACAATTTGCAATGAGGGCC
>TRINITY_DN114040_c0_g2_i6 from sample A1 / Example unspliced isoform:CAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAGTATGTAACCATGTCTCATATACAGATCCATTATTCTTCTTTTATGAGCTGTTCCCTAGTATTGTTGCATCAGAAACACATGACAAGATCCCAGTTGTAGGGACGATTAT
AAGGACTACGCAGgtttgttttgcttgtattatcattcatatgaaatactctaggaacttcctttgtaactattttcccgtttcaaaggcacgaccttgacctaaactttctgattttttaaaaattcttttggttttcctgggatcagGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCT
GAAATAAAGGTAAATGATGCAGATTGTCTACAATTTCCTAGAAAATTGTTATCATTATATTATAACTGAAGATAAATTTAAGAGATTGATTAGGACTACTCATAAAGCTATGGTGTGCTTGAAGACATTTTTCATTGGAGTATTAGATTTACGGAGGAAAATGAAGTCATCTTTTTTTCTATATTCAGCGATTCTTCTGC
ATGTTACTATACTTGTATTTTAGTATTTTACCTTGTCTGGTATTAGAGAGCCTGTAAGACATCTTTCTTAAAG
Intron 2 GTATGTAACC ... GACTACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.89 | 17.6 | 23 | 20.2 |
| A2 | 55.62 | 20.1 | 33 | 17 |
| A3 | 74.11 | 6.2 | 22 | 13.5 |
| A4 | 71.52 | 8.8 | 25 | 19.1 |
| A5 | 62.16 | 7 | 18 | 5 |
| A6 | 70.94 | 10.8 | 39 | 13.7 |
| A7 | 63.5 | 17.2 | 33 | 22.8 |
| A8 | 63.62 | 13.3 | 31 | 14.5 |
| A9 | 71.37 | 15.3 | 51 | 24.3 |
| A10 | 75.45 | 14.7 | 60 | 29.5 |
>TRINITY_DN114040_c0_g2_i1 from sample A1 / Example spliced isoformCAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGAGAAAGGCTTCTTGCAATGATTTTCCACGTGTGCTGTTATTTCCAGAGGG
GACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGGTTCAACCAGTTGTAATTCGGTATCCTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGTGGAGTATCTTCCAGTCATTT
TTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCAAAGGCAATTAATGTTGTCCAAACAGAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAATGGAAAGGTTATTCGAACTA
AGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCA
>TRINITY_DN114040_c0_g2_i2 from sample A1 / Example unspliced isoform:CAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAgtatgtaaccatgtctcatatacagatccattattcttcttttatgagctgttccctagtattgttgcatcagaaacacatgacaagatcccagttgtagggacgattat
aaggactacgcagGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGAGAAAGGCTTCTTGCAATGATTTTCCACGTGTGCTGTTATTTCCAGAGGGGACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGGTTCAACCAGTTG
TAATTCGGTATCCTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGTGGAGTATCTTCCAGTCATTTTTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCAAAGGCAATTAAT
GTTGTCCAAACAGAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAATGGAAAGGTTATTCGAACTAAGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCAAGTGGGTGTGTTAACATGGA
TAATTTCCTGGCTGGGCTGGGCTTTCCAAGAACTCCATTCTCTGAGCAGATATTTTGCTTCTATGACATGGAAAGTCAAGGGTCAATTACATTCAGTGAGTACTTATGTGGTTCAATGTGTATCCGGAAACGACCAAAGTTTCCTCTAGTGTGTGAATTGGCATTTAAATACTGTGACATAGAGGGAAACCATACTCTTT
CAAAAGAGCAGGTTGAGCAAACATTGAAACTGGTTTTCCCATGTATTTCTGAAGACAATGTATATCAAATTTTTAAGCTTTTTGATGTTGACAATGATGAGGCAGTGAGCTGGGATGACTTTAAGATATGTTTGGAAAGGAATCCTGTATTTATTTCATTATTTTGTGCGCTGATTGATAAAAATGGCTTGGGTGTCGAG
AAGGCTTAGTAGAAACTAGCTTTAATCATTGAGAATTTGATTTCAAGGCAATCTGCCAAGTTTGTAACATAGGATATGCTACAATTTGAGAGTTTTGATTGAGTTGCAAATAACCAAGTTCTTCATTCATTTGTTATTAACAATTTGCAATGAGGGCC
Intron 3 GTAAACCTGC ... GTTGCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.65 | 11 | 30 | 16 |
| A2 | 65.66 | 17 | 36 | 29 |
| A3 | 77.78 | 5 | 20 | 15 |
| A4 | 72.73 | 9 | 24 | 24 |
| A5 | 69.23 | 6 | 16 | 11 |
| A6 | 70.83 | 14 | 42 | 26 |
| A7 | 74.65 | 9 | 30 | 23 |
| A8 | 80.33 | 6 | 30 | 19 |
| A9 | 77.98 | 12 | 48 | 37 |
| A10 | 78.29 | 14 | 57 | 44 |
>TRINITY_DN43291_c0_g1_i8 from sample A6 / Example spliced isoformCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCCAGCGACACAATCCATCCCACGAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAACATATTTATACAAATTTCGTTTTTCCCTTGCCATCGATTATCGATTTCTTCCT
TCCCACGTGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGCAGAAGCCCATAACAACGGGGGGGTGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCT
GCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCAGAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCA
ATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGGATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGAAACACATGACAAGATCCCAGTTGTAGGGACGATTATAAGGACTACGCA
GGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGAGAAAGGCTTCTTGCAATGATTTTCCACGTGTGCTGTTATTTCCAGAGGGGACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGGTTCAACCAGTTGTAATTCGGTATC
CTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGTGGAGTATCTTCCAGTCATTTTTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCAAAGGCAATTAATGTTGTCCAAACA
GAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAATGGAAAGGTTATTCGAACTAAGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCAAGTGGGTGTGTTAACATGGATAATTTCCTGGC
TGGGCTGGGCTTTCCAAGAACTCCATTCTCTGAGCAGATATTTTGCTTCTATGACATGGAAAGTCAAGGGTCAATTACATTCAGTGAGTACTTATGTGGTTCAATGTGTATCCGGAAACGACCAAAGTTTCCTCTAGTGTGTGAATTGGCATTTAAATACTGTGACATAGAGGGAAACCATACTCTTTCAAAAGAGCAGG
TTGAGCAAACATTGAAACTGGTTTTCCCATGTATTTCTGAAGACAATGTATATCAAATTTTTAAGCTTTTTGATGTTGACAATGATGAGGCAGTGAGCTGGGATGACTTTAAGATATGTTTGGAAAGGAATCCTGTATTTATTTCATTATTTTGTGCGCTGATTGATAAAAATGGCTTGGGTGTCGAGAAGGCTTAGTAG
AAACTAGCTTTAATCATTGAGAATTTGATTTCAAGGCAATCTGCCAAGTTTGTAACATAGGATATGCTACAATTTGAGAGTTTTGATTGAGTTGCAAATAACCAAGTTCTTCATTCATTTGTTATTAACAATTTGCAATGAGGGTCATAATGGTTTATTTGAAGCATGTTACTGATTCAATTTCATATCACCCTATGGGT
TGTATTT
>TRINITY_DN43291_c0_g1_i7 from sample A6 / Example unspliced isoform:CTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCCAGCGACACAATCCATCCCACGAAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAACATATTTATACAAATTTCGTTTTTCCCTTGCCATCGATTATCGATTTCTTCC
TTCCCACGTGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGCAGAAGCCCATAACAACGGGGGGGTGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGC
TGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCAGAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTC
AATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGGATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGgtaaacctgcttctagaagaattgcaccaatagtagtatgtaaccatg
tctcatatacagatccattattcttcttttatgagctgttccctagtattgttgcatcagAAACACATGACAAGATCCCAGTTGTAGGGACGATTATAAGGACTACGCAGGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGAGAAAGGCTTCTTGCAATGATTTTCCACGT
GTGCTGTTATTTCCAGAGGGGACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGGTTCAACCAGTTGTAATTCGGTATCCTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGT
GGAGTATCTTCCAGTCATTTTTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCAAAGGCAATTAATGTTGTCCAAACAGAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAA
TGGAAAGGTTATTCGAACTAAGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCAAGTGGGTGTGTTAACATGGATAATTTCCTGGCTGGGCTGGGCTTTCCAAGAACTCCATTCTCTGAGCAGATATTTTGCTTCTATGACATGGAAAGTCAAGGGTCAATTACATTCAGTGAGTAC
TTATGTGGTTCAATGTGTATCCGGAAACGACCAAAGTTTCCTCTAGTGTGTGACTTGGCATTTAAATACTGTGACTTAGAGGGAAACCATCCTC
Intron 4 GTATGTAACC ... CTGGGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 23 | 23 | 5 |
| A2 | 60 | 22 | 33 | 2 |
| A3 | 75.86 | 7 | 22 | 3 |
| A4 | 71.43 | 10 | 25 | 7 |
| A5 | 72 | 7 | 18 | 0 |
| A6 | 76.47 | 12 | 39 | 2 |
| A7 | 58.93 | 23 | 33 | 0 |
| A8 | 65.96 | 16 | 31 | 0 |
| A9 | 73.91 | 18 | 51 | 0 |
| A10 | 77.92 | 17 | 60 | 0 |
>TRINITY_DN114040_c0_g2_i1 from sample A1 / Example spliced isoformCAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCTGAAATAAAGAGAAAGGCTTCTTGCAATGATTTTCCACGTGTGCTGTTATTTCCAGAGGG
GACAACTACCAATGGAAAGGCACTTATATCTTTTCAGCCTGGGGCTTTTGTCCCTGGTTTCCCGGTTCAACCAGTTGTAATTCGGTATCCTCATGTACACTTTGATCCATCTTGGGGCAAAATCTCTTTGTCAAAGCTCATATTTCGTATGCTTACTCAATTTCACAATTTTATGGAGGTGGAGTATCTTCCAGTCATTT
TTCCTACAGAAAGTAAAATGGGAGATCCTACCTTTTATGCCAAGAAGGTTGGATATGCTATGGCAAAGGCAATTAATGTTGTCCAAACAGAGCATTCATATGGTGATTTAGTTCTTGCTTCAAAAGCATCACAGATAGGATTGGTTCCACCTTCAGCATATGTGGTTGAGATGGCAAAAATGGAAAGGTTATTCGAACTA
AGCACAAGAGAGGCAATTGTTTTTCTTGAGAGATTTGCTGCCATGCATCCTGATTCA
>TRINITY_DN114040_c0_g2_i6 from sample A1 / Example unspliced isoform:CAGAAGACATCTAGCTATCTGTCACAAGAACAAAGTCTTTTCAACTTCCAACAAATTAAGAGAAAAAGACAACGCCGTCAATTGACGGGGACGAACAAAGCTAGCTCATGTCACCGACCATACCTGGCGATAAAGATGTCAACTGAATCGTCAAGAAACGTCTGAGAATGCTTCAACTCAAGCGACACAATCCATCCCAC
GAAAAAACAAAAAATTGGGATTCAAACGCTATCATCGCCAAAGACACCCAATATATTTATACAAATTTCGTTTTTCCCTTGCCACCGATTATCGATTTCTTCCTTCCCACGGGTGTTTCGACCAATAAAAAACTATACAAGCTTCCATAGTAAGGCATCCCAATGGACATTGGCGAGAATCACAGAACACCTCTATTAGC
AGAAGCCCATAACAACGGGGGGGCGATGCCAATGGAACCCAAGATGAAAGCAATCTTACGCAGTGAAGGAGAAGAGGTCGTGCTCGACATCAATGAAGTCAGCTGCTCAAATGAAAACGGACATGATATCGACAATCCACTTGCATTCTTGGGATTTTCGGATGATTTCAATGTTCCTGCCTCGTCTATTGATCCATTCA
GAAATCATACTCCCAATATATCGGGGGTTTATGAATGGATAAAAACTGTGATTTGTGTGCCTCTTGCTCTGGTCAGGGTGCTGGTCTTTGGGGTTGTGCTTTCAATTGGTTTTTCGGCTTGCAAATTGGCCCTGATTGGATGGAGGAACAGGCAAAGCCCAATGCCCAAGTGGAGGGGTGCATTGATGTGGGTCGCTCGG
ATTTCGGCTCGTTGCGTTCTCTTTTGTTTTGGGTATCATTGGATTCGGCGCATAGGTAAACCTGCTTCTAGAAGAATTGCACCAATAGTAgtatgtaaccatgtctcatatacagatccattattcttcttttatgagctgttccctagtattgttgcatcagaaacacatgacaagatcccagttgtagggacgattat
aaggactacgcaggtttgttttgcttgtattatcattcatatgaaatactctaggaacttcctttgtaactattttcccgtttcaaaggcacgaccttgacctaaactttctgattttttaaaaattcttttggttttcctgggatcagGTCATTTATGTGGATAGATCCTCACCAGAATCTCGTAAACATGCTGTGGCT
GAAATAAAGGTAAATGATGCAGATTGTCTACAATTTCCTAGAAAATTGTTATCATTATATTATAACTGAAGATAAATTTAAGAGATTGATTAGGACTACTCATAAAGCTATGGTGTGCTTGAAGACATTTTTCATTGGAGTATTAGATTTACGGAGGAAAATGAAGTCATCTTTTTTTCTATATTCAGCGATTCTTCTGC
ATGTTACTATACTTGTATTTTAGTATTTTACCTTGTCTGGTATTAGAGAGCCTGTAAGACATCTTTCTTAAAG