sp|Q9SF85|ADK1_ARATH ----> Adenosine kinase 1
Intron 1 GTGAGGACTG ... TAATGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.72 | 1255 | 234 | 12 |
| A2 | 13.24 | 1239 | 189 | 4 |
| A3 | 14.47 | 1401 | 237 | 4 |
| A4 | 12.57 | 1106 | 159 | 0 |
| A5 | 15.92 | 660 | 125 | 3 |
| A6 | 11.91 | 7179 | 971 | 1 |
| A7 | 12.49 | 7437 | 1061 | 0 |
| A8 | 13.96 | 4541 | 737 | 1 |
| A9 | 13.6 | 7083 | 1115 | 1 |
| A10 | 12.81 | 6280 | 923 | 2 |
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
>TRINITY_DN118052_c0_g2_i2 from sample A1 / Example unspliced isoform:GTGGATATTAGGTAGGTTTGAAATACTAGTGTTTCTTTCAGAGCAACTAAGATCTCTTTCCTGGTTTGTTGTCATTCTATGAAATGTAGGGGCCACACAGAACTCTATCAAGGTTGCACAGGTGATGATCATCTCTTTCTTCACTTGAAATTAACATTTTTCTATCATTTTGTTCAAATGCTATTAGTTATCTTCCTCTC
TGATCAGGTAATTTTCTATGGATCATATTTTATAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGT
GAAAGgtgaggactgaaaaggtctcttggcagtgctagtgtataatactagttcttttgtcactgacacccgacctatccatactgttctttttatccacctattcttgttagattttgctctcttcacttatttaaattttaaccttgtaatgtccagGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAAT
CAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGGTAATGTACTGAAGGTCTTGCTCTGTTTAAGTTGTTTTTTCTAAGTTTGGGTTTGACTTAGTTCTCATTTTAAAAGGAAATTATTGTTTGTTGTACAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGGTATTGCAATTTGCAATCACCCTGGCATCTGGAAGCATAGGGGTTATTTTGTTTTATTGGTTATTTGGCAAACTAACAATGTCCAAACCAAAGGGTCTGTCTCATATCCTGTATGACTCTTACTTCTATCCCATGTTGTGCAGATATTTATGATGAATCTTGCAGCTC
CTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAGATAGCAGATGATTGCACAGATAGAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGA
AATGGTTCATGATATCTGGGTATTTTGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGT
TGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAG
GCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTCTCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 2 GTAAGACTTA ... TTTGTCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.38 | 738 | 3 | 18 |
| A2 | 1.85 | 582 | 0 | 11 |
| A3 | 0.68 | 726 | 0 | 5 |
| A4 | 1.19 | 498 | 1 | 6 |
| A5 | 0.29 | 341 | 0 | 1 |
| A6 | 0.15 | 4623 | 2 | 7 |
| A7 | 0.31 | 4191 | 2 | 13 |
| A8 | 0.33 | 3275 | 2 | 11 |
| A9 | 0.12 | 4251 | 2 | 5 |
| A10 | 0.12 | 3302 | 4 | 4 |
>TRINITY_DN42377_c0_g1_i1 from sample A6 / Example spliced isoformTATTTATTTAATTTAAAAAAATGAAATAAAATAAAATATTAATATTAAATATTTATTTAATTTAAAAAAATGAAATAAAATAAAATATTAATATTAAATATTTATTTAATTTAAAAAAATGGAATATGCAGTCCTAAGAGACTGATGTTCCTATAAATGCTTGGAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCT
CACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTGAAGCTCAACAACGCGATATTGGCAGAACCCCAGCAC
GTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTA
TGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGACTGACAATGTTGAAGAAATAGCTCTAAAG
ATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAA
ATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGA
TTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGTTTTCCATGTTGCTCTATCTTTGGTTTTGGGACAATTTTTCT
GTCAAGAAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGC
>TRINITY_DN42377_c0_g1_i4 from sample A6 / Example unspliced isoform:GCATTGTTGAAAGTTTTTCCgtaagacttacttccttgtgttgtttttgtctgatatctagatagcagatgattgcacagatagaaaaacatttctaatttcatgcgaagttgatttggcttttttcttccatgatgtctgaattccctatgttatatattgttatactgtttgaaatggttcatgatatctgggtattt
tgtcctagGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCA
TCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTAT
TGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTA
GGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGTTTTCCATGTTGCTCTATCTTTGGTTTTGGGACAATTTTTCTGTCAAG
AAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGC
Intron 3 GTATTGCAAT ... TGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.13 | 656 | 104.7 | 4 |
| A2 | 13.31 | 571 | 92 | 2 |
| A3 | 10.35 | 690 | 84 | 3 |
| A4 | 14.74 | 481 | 88.7 | 2 |
| A5 | 12.03 | 293 | 42.7 | 3 |
| A6 | 10.41 | 3625 | 443.3 | 1 |
| A7 | 10.6 | 3473.2 | 431.7 | 9 |
| A8 | 11.85 | 2690 | 383.7 | 4 |
| A9 | 9.77 | 3554.2 | 403.3 | 2 |
| A10 | 8.96 | 2821 | 290.7 | 1 |
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
>TRINITY_DN118052_c0_g2_i2 from sample A1 / Example unspliced isoform:GTGGATATTAGGTAGGTTTGAAATACTAGTGTTTCTTTCAGAGCAACTAAGATCTCTTTCCTGGTTTGTTGTCATTCTATGAAATGTAGGGGCCACACAGAACTCTATCAAGGTTGCACAGGTGATGATCATCTCTTTCTTCACTTGAAATTAACATTTTTCTATCATTTTGTTCAAATGCTATTAGTTATCTTCCTCTC
TGATCAGGTAATTTTCTATGGATCATATTTTATAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGT
GAAAGGTGAGGACTGAAAAGGTCTCTTGGCAGTGCTAGTGTATAATACTAGTTCTTTTGTCACTGACACCCGACCTATCCATACTGTTCTTTTTATCCACCTATTCTTGTTAGATTTTGCTCTCTTCACTTATTTAAATTTTAACCTTGTAATGTCCAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAAT
CAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGGTAATGTACTGAAGGTCTTGCTCTGTTTAAGTTGTTTTTTCTAAGTTTGGGTTTGACTTAGTTCTCATTTTAAAAGGAAATTATTGTTTGTTGTACAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGgtattgcaatttgcaatcaccctggcatctggaagcataggggttattttgttttattggttatttggcaaactaacaatgtccaaaccaaagggtctgtctcatatcctgtatgactcttacttctatcccatgttgtgcagATATTTATGATGAATCTTGCAGCTC
CTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAGATAGCAGATGATTGCACAGATAGAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGA
AATGGTTCATGATATCTGGGTATTTTGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGT
TGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAG
GCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTCTCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 4 GTTTGGCCAA ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.48 | 1078 | 1 | 168 |
| A2 | 14.81 | 978 | 2 | 170 |
| A3 | 14.58 | 996 | 0 | 170 |
| A4 | 16.1 | 766 | 2 | 147 |
| A5 | 17.66 | 499 | 1 | 107 |
| A6 | 14.88 | 10486 | 2 | 1832 |
| A7 | 14.73 | 8196.5 | 1 | 1416 |
| A8 | 17.49 | 9233 | 14 | 1958 |
| A9 | 16.3 | 7780 | 3 | 1516 |
| A10 | 16.15 | 5752.5 | 1 | 1108 |
>TRINITY_DN42377_c0_g1_i4 from sample A6 / Example spliced isoformGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAGATAGCAGATGATTGCACAGATAGAAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGAAATGGTTCATGATATCTGGGTATTT
TGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCA
TCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTAT
TGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTA
GGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGTTTTCCATGTTGCTCTATCTTTGGTTTTGGGACAATTTTTCTGTCAAG
AAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGC
>TRINITY_DN42377_c0_g1_i2 from sample A6 / Example unspliced isoform:TACAAGGAATTTATATCTTACTAATTCTCATATATGGATCTCTTCTAGTTCATTTCTTGTATGTTATTTTGGTTTATTGTTTTTTATTAGGAGTCATAAAAGTTGCGATAGAGGAGGTTATGTACATGTCATTGCACAGGTCCATTGATTGGTAAATCAAATACCAGTCGTATTCTGTTTCTTCTCTCTGCTGTTCTATC
ATGCCGATGATGTGCAATTTCTTATCATTACAAGGAATTTATATCTTACTACTCAGTACTCATGTATGAAGCCATTCTGTTTTGTTTCATGTATCTTATTTTGGTTATAATTGTTTTTAATTAGGAGTCACACAAGTTGTGATAGAGATGAAGCTGTGTACATGTAATTTGCCAAGAGTCATTGATTGCTAAATTAAGAA
TCTCTTAGATTTTCTTGTTTTTATTATTTAAATATTTGGCAAAATATATTCTGCTGTTCTATCATGTCAAGGATGAGAATTCCCTATCAAAATGATTTAGTTAATGAGAATTATCACCAAGTAGCCAAATTTTGCATCGTGTGTTTTTCTCTGCTTTCAAGAAACAAATGGTTCTCATTATCTGTGAATATCCCTCTTAT
TTTTCAAAATGCTGAGATCATTATATTTGTTATCATTTCAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGgtttggccaatttcttatgtgtctacttaaatgtttacaaaacttaggtgtaggcgagcaatactgaatcctctttctttcttgttttggcagGAGAT
GCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCAC
ATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGT
TTTCCATGTTGCTCTATCTTTGGTTTTGGGACAATTTTTCTGTCAAGAAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGC
Intron 5 GTAAATTGTT ... CATTTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.59 | 1051.9 | 89.7 | 279.4 |
| A2 | 15.84 | 912.4 | 58.3 | 174.8 |
| A3 | 17.78 | 1031.7 | 85.1 | 227.5 |
| A4 | 17.48 | 789.1 | 51.6 | 170.5 |
| A5 | 17.36 | 436.7 | 42.3 | 93.4 |
| A6 | 19.97 | 7178.6 | 487.9 | 1836.8 |
| A7 | 20.58 | 6662.7 | 470.9 | 1771.6 |
| A8 | 21.33 | 5909 | 372.4 | 1648.5 |
| A9 | 19.82 | 6200.3 | 452.3 | 1570.3 |
| A10 | 22.11 | 4838.7 | 328 | 1414.8 |
>TRINITY_DN118052_c0_g2_i5 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATT
TGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGG
GCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCA
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example unspliced isoform:AGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGgtaaattgtttgatatcttaatttctaaccactgtatttctaaacatgaatggagtagagatgtttactaactattttacattttctagACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 6 GTGATGATCA ... TATTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.57 | 1371.3 | 11 | 452 |
| A2 | 23.95 | 1411.8 | 4 | 430 |
| A3 | 24.04 | 1443.5 | 14 | 443 |
| A4 | 23.57 | 1141.3 | 14 | 341 |
| A5 | 25.29 | 696.2 | 1 | 229 |
| A6 | 23.74 | 6181.7 | 1 | 1863 |
| A7 | 23.81 | 6929.7 | 6 | 2104 |
| A8 | 24.43 | 4010.8 | 2 | 1261 |
| A9 | 24.49 | 6229.2 | 3 | 1964 |
| A10 | 24.1 | 5686 | 13 | 1763 |
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
>TRINITY_DN118052_c0_g2_i2 from sample A1 / Example unspliced isoform:GTGGATATTAGGTAGGTTTGAAATACTAGTGTTTCTTTCAGAGCAACTAAGATCTCTTTCCTGGTTTGTTGTCATTCTATGAAATGTAGGGGCCACACAGAACTCTATCAAGGTTGCACAGgtgatgatcatctctttcttcacttgaaattaacatttttctatcattttgttcaaatgctattagttatcttcctctc
tgatcaggtaattttctatggatcatattttatagTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGT
GAAAGGTGAGGACTGAAAAGGTCTCTTGGCAGTGCTAGTGTATAATACTAGTTCTTTTGTCACTGACACCCGACCTATCCATACTGTTCTTTTTATCCACCTATTCTTGTTAGATTTTGCTCTCTTCACTTATTTAAATTTTAACCTTGTAATGTCCAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAAT
CAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGGTAATGTACTGAAGGTCTTGCTCTGTTTAAGTTGTTTTTTCTAAGTTTGGGTTTGACTTAGTTCTCATTTTAAAAGGAAATTATTGTTTGTTGTACAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGGTATTGCAATTTGCAATCACCCTGGCATCTGGAAGCATAGGGGTTATTTTGTTTTATTGGTTATTTGGCAAACTAACAATGTCCAAACCAAAGGGTCTGTCTCATATCCTGTATGACTCTTACTTCTATCCCATGTTGTGCAGATATTTATGATGAATCTTGCAGCTC
CTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAGATAGCAGATGATTGCACAGATAGAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGA
AATGGTTCATGATATCTGGGTATTTTGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGT
TGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAG
GCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTCTCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 7 GTATGGTATC ... TGAAATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.21 | 1635 | 264 | 185.5 |
| A2 | 11.76 | 1643 | 251 | 226 |
| A3 | 12.62 | 1708.5 | 285 | 246 |
| A4 | 12.38 | 1388 | 227.5 | 197.5 |
| A5 | 13.57 | 831 | 153.5 | 109 |
| A6 | 10.85 | 6835 | 946.5 | 996.5 |
| A7 | 10.83 | 7666 | 1060 | 1177.5 |
| A8 | 10.65 | 4317 | 584.5 | 668.5 |
| A9 | 11.3 | 6954 | 1015.5 | 1043 |
| A10 | 11.66 | 6432 | 977.5 | 1024 |
>TRINITY_DN111901_c0_g1_i1 from sample A2 / Example spliced isoformAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTGAAGCTCAAC
AACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAA
GGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCC
TTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGACT
GACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATTTGTAGGAGG
CTTCTTATCTCAATTGGTGTTGGGTAAATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGGGCAGAGACT
TCCAAACAGAGTACCAATGTTTCCTGATTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGTTTTCCATGTTGCTC
TATCTTTGGTTTTGGGACAATTTTTCTGTCAAGAAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGAGTATGAGGTTTTTGAGAGATGTTTTGGCCTCATGATCTACGTTTTATACATATAATTGCACAGTC
CACACCCAACCACAGGCCCCGGTGAGTTTATCTAATGTTTGTCTCAATATCTGTTTTGTTACCATAATAAGTATAACATAAATGATCTGTGCTAACAAGCATCTCAGATGACG
>TRINITY_DN111901_c0_g1_i6 from sample A2 / Example unspliced isoform:TTGCATCTTCATTCCTCATGCCATAATCCATATTGTACGTAGCATGCTATATGTATGTATGGTTGCATGCAAATTGTCTACCTGGCGTTAAGTTCTCGTTTTTAATTTTTTGATTAAGTTTATATAGTTCTTTTCTCCTGAATTGGCATGGAAATTCTGTTTCTTAAAATTTTATTTACCCTGTTTCTGATTGAACCAGG
TATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGgtatggtatctgaacgtcaaaatactgaacatggaaaatgatatcgtggatattaggtaggtttgaaatactagtgtttctttcagagcaactaagatctctttcctggtttgttgtcattctatgaaatgtagGGGCCACACAGAACTCTATC
AAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTT
GTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCA
Intron 8 GTAAGACTTA ... TTTGTCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.12 | 676.7 | 5 | 42.3 |
| A2 | 4.68 | 531.3 | 3 | 31.3 |
| A3 | 3.07 | 672.4 | 0 | 26.6 |
| A4 | 4.1 | 451.3 | 4 | 24.4 |
| A5 | 2.79 | 316.8 | 0 | 11.9 |
| A6 | 2.8 | 4244 | 2 | 167.2 |
| A7 | 2.85 | 3861.8 | 6 | 149.4 |
| A8 | 2.91 | 3006.6 | 6 | 119.3 |
| A9 | 2.62 | 3920.3 | 4 | 141.9 |
| A10 | 2.65 | 3045.6 | 7 | 111.3 |
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
>TRINITY_DN118052_c0_g2_i2 from sample A1 / Example unspliced isoform:GTGGATATTAGGTAGGTTTGAAATACTAGTGTTTCTTTCAGAGCAACTAAGATCTCTTTCCTGGTTTGTTGTCATTCTATGAAATGTAGGGGCCACACAGAACTCTATCAAGGTTGCACAGGTGATGATCATCTCTTTCTTCACTTGAAATTAACATTTTTCTATCATTTTGTTCAAATGCTATTAGTTATCTTCCTCTC
TGATCAGGTAATTTTCTATGGATCATATTTTATAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGT
GAAAGGTGAGGACTGAAAAGGTCTCTTGGCAGTGCTAGTGTATAATACTAGTTCTTTTGTCACTGACACCCGACCTATCCATACTGTTCTTTTTATCCACCTATTCTTGTTAGATTTTGCTCTCTTCACTTATTTAAATTTTAACCTTGTAATGTCCAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAAT
CAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGGTAATGTACTGAAGGTCTTGCTCTGTTTAAGTTGTTTTTTCTAAGTTTGGGTTTGACTTAGTTCTCATTTTAAAAGGAAATTATTGTTTGTTGTACAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGGTATTGCAATTTGCAATCACCCTGGCATCTGGAAGCATAGGGGTTATTTTGTTTTATTGGTTATTTGGCAAACTAACAATGTCCAAACCAAAGGGTCTGTCTCATATCCTGTATGACTCTTACTTCTATCCCATGTTGTGCAGATATTTATGATGAATCTTGCAGCTC
CTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCgtaagacttacttccttgtgttgtttttgtctgatatctagatagcagatgattgcacagatagaaaacatttctaatttcatgcgaagttgatttggcttttttcttccatgatgtctgaattccctatgttatatattgttatactgtttga
aatggttcatgatatctgggtattttgtcctagGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGT
TGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAG
GCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTCTCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 9 GTAATGTACT ... TGTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.59 | 1066 | 60 | 79 |
| A2 | 7.5 | 825 | 46 | 71.7 |
| A3 | 5.68 | 934 | 56.3 | 60.3 |
| A4 | 6.22 | 887 | 47.3 | 62.3 |
| A5 | 6.8 | 423 | 32 | 33.3 |
| A6 | 5.36 | 4713 | 311.7 | 290 |
| A7 | 5.78 | 4506 | 327 | 299.7 |
| A8 | 6.63 | 3214 | 208.7 | 250.3 |
| A9 | 5.58 | 4301 | 281.3 | 277.7 |
| A10 | 4.79 | 3632 | 257 | 196 |
>TRINITY_DN118052_c0_g2_i3 from sample A1 / Example spliced isoformAGCAAGAAGAGGAGTCGTGCAGCTAGTTGATATCCTCACGCCAGGGAGACGTTACGCGATCGATTCCTGAAAAAATTACAGAGAATTCCATTCTACAAAGAAGCAGGATGGCTATGGAAGGCGTGCTCTACGGCATGGGCAATCCCCTGTTGGACATTTCTGCTGTTGTAGACGAGGAGTTTTTGAAGAAATACGATGTG
AAGCTCAACAACGCGATATTGGCAGAACCCCAGCACGTTCCAATGTATCAAGAGCTTTCTGAGAGCAAAAATGTTGAGTATATTGCAGGAGGGGCCACACAGAACTCTATCAAGGTTGCACAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAA
AAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTG
GCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGG
TGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTC
ATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAGGCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTC
TCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
>TRINITY_DN118052_c0_g2_i2 from sample A1 / Example unspliced isoform:GTGGATATTAGGTAGGTTTGAAATACTAGTGTTTCTTTCAGAGCAACTAAGATCTCTTTCCTGGTTTGTTGTCATTCTATGAAATGTAGGGGCCACACAGAACTCTATCAAGGTTGCACAGGTGATGATCATCTCTTTCTTCACTTGAAATTAACATTTTTCTATCATTTTGTTCAAATGCTATTAGTTATCTTCCTCTC
TGATCAGGTAATTTTCTATGGATCATATTTTATAGTGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGT
GAAAGGTGAGGACTGAAAAGGTCTCTTGGCAGTGCTAGTGTATAATACTAGTTCTTTTGTCACTGACACCCGACCTATCCATACTGTTCTTTTTATCCACCTATTCTTGTTAGATTTTGCTCTCTTCACTTATTTAAATTTTAACCTTGTAATGTCCAGGTCACTGGTTGCAAATTTGTCAGCAGCAAATTGCTACAAAT
CAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGgtaatgtactgaaggtcttgctctgtttaagttgttttttctaagtttgggtttgacttagttctcattttaaaaggaaattattgtttgttgtacagTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTAC
TTGTGGCTGAACATGCAGCTCAGAAGGGCAAGGTATTGCAATTTGCAATCACCCTGGCATCTGGAAGCATAGGGGTTATTTTGTTTTATTGGTTATTTGGCAAACTAACAATGTCCAAACCAAAGGGTCTGTCTCATATCCTGTATGACTCTTACTTCTATCCCATGTTGTGCAGATATTTATGATGAATCTTGCAGCTC
CTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAGATAGCAGATGATTGCACAGATAGAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGA
AATGGTTCATGATATCTGGGTATTTTGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGT
TGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAGTCATTGCAGAAGATGGAAAGGTAACTTCTGTTCTATCTTTTGTACTTTTTTCTATAGCTGAAATTGAGAATATGAGAAGAAATTCCTTGGAATATTGTACCTGGAGAG
GCCAAAGGTTGCTGGGGTACTTTGATGGGTCATGAGTCTAGCAACTTCTGACGACATAATTGAGCTTTCTTGGGTTTTATTAGCCTACATTCTCTCTCTCTCTCTATATTTTTTAAATACAGGCTATCTTACTTCACTGGTACCATCCTGAGTCCTGACAACCTTCTTCAATAATGGATTTGAAGCTATC
Intron 10 GTAACTTCTG ... ATCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.56 | 1422 | 368 | 226.3 |
| A2 | 17.35 | 1191 | 250 | 181 |
| A3 | 22.64 | 1343 | 393 | 169.2 |
| A4 | 21.22 | 965 | 260 | 170.8 |
| A5 | 22.52 | 585 | 170 | 87 |
| A6 | 18.37 | 12217 | 2749 | 2112.5 |
| A7 | 19.95 | 10214.2 | 2546 | 1538.3 |
| A8 | 19.48 | 10674 | 2583 | 2053.5 |
| A9 | 19.96 | 9587 | 2391 | 1537 |
| A10 | 21.51 | 7325 | 2007 | 1055.2 |
>TRINITY_DN43665_c0_g2_i5 from sample A7 / Example spliced isoformCTTCAGTATTGTTCATTTTCATTGTTTTATACTTTCATTTGGCTGATATTTGCAAGAGTACTCTGTTTTTCTAAATATCATTGATATGAGGAACTGATTTTTTGCGTTTCATACAGGTGCGATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAAT
TTGTCAGCAGCAAATTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTT
TTTTACTGAAGCATTGTTGAAAGTTTTTCCGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGTGCAAGGGTGGGAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCCAGTAG
TCATTGCAGAAGATGGAAAGGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACCAATGGAGCAGGAGATGCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTT
CCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTGTTGTCCCTGCTGCACATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTAT
TCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTTACTATATTTTTGAGTTTTCCATGTTGCTCTATCTTTAGTTTTGGGACAATTTTTCTGTCAAGAAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTA
GTATTTGCTTCTATGGTCTTCTTGATGTATGCAGAGTATGAG
>TRINITY_DN43665_c0_g2_i3 from sample A7 / Example unspliced isoform:TGGATGCTCCAAATTCCTGGTGCAACAACCTTCATAGGGTGCATTGGAAAGGACAAGTTTGGGGCAGAGATGAAGAAAAATTCAAAGGCCGCTGGAGTCAATGTGCAATATTATGAGGATGAAACAAAACCAACTGGTACATGTGGTGTTCTTGTGGTTGGGGGTGAAAGGTCACTGGTTGCAAATTTGTCAGCAGCAAA
TTGCTACAAATCAGAACACTTGAAGTCACCGGAAAACTGGGCTTTAGTGGAGAAGGCCAAGTTCTTTTATATTGCTGGCTTTTTCCTTACAGTCTCGCCTGAGTCAATTCTACTTGTGGCTGAACATGCAGCTCAGAAGGGCAAGGTATTGCAATTTGCAATCACCCTGGTATCTGGAAGCATAGGGGTTATTTTGTTTT
ATTGGTTATTTGGCAAACTAACAATGTCCAAACCAAAGGGTCTGTCTCATATCCTGTATGACTCTTACTTCTATCCCATGTTGTGCAGATATTTATGATGAATCTTGCAGCTCCTTTTATCTGCGAGTTTTTTACTGAAGCATTGTTGAAAGTTTTTCCGTAAGACTTACTTCCTTGTGTTGTTTTTGTCTGATATCTAG
ATAGCAGATGATTGCACAGATAGAAAACATTTCTAATTTCATGCGAAGTTGATTTGGCTTTTTTCTTCCATGATGTCTGAATTCCCTATGTTATATATTGTTATACTGTTTGAAATGGTTCATGATATCTGGGTATTTTGTCCTAGGTATATGGATTTTGTTTTTGGAAATGAGACTGAAGCAAGGACTTTTGCACGGGT
GCAAGGGTGGGAGGTAAATTGTTTGATATCTTAATTTCTAACCACTGTATTTCTAAACATGAATGGAGTAGAGATGTTTACTAACTATTTTACATTTTCTAGACTGACAATGTTGAAGAAATAGCTCTAAAGATGTCATCACTACCAAAGGCAACTGGAACTCACAAGAGGATAGCTGTTATTACACAAGGTGCAGATCC
AGTAGTCATTGCAGAAGATGGAAAGgtaacttctgttctatcttttgtacttttttctatagctgaaattgagaatatgagaagaaattccttggaatattgtacctggagaggccaaaggttgctggggtactttgatgggtcatgagtctagcaacttctgacgacataattgagctttcttgggttttattagccta
cattctctctctctctctatattttttaaatacaggctatcttacttcactggtaccatcctgagtcctgacaaccttcttcaataatggatttgaagctatcattctcttggtttttgctgtgaaatttagtgtacttacaagttgcctttgtatttaggagttcaagttctacagttcctccagtcttctgaaactca
tgtcagtgttatatgggagaccaggaaatcaactaacaagttaatttttgtttctaatgagattttgattgctgcttagtatttttggaatcaattagtgttggttcttgtataatcccttccatattcaaccaaatacattctggtcaatggtgctagagttcttgcccttatgaccaaaggatgatatgagcttgatt
gagttctcagcaagttattgatgtctagagttgttatgtagtaaacatgtgcaaccacatggcaatcaacattggagacaaactatatgtagggtattgtctgtaacatgacattgtcatcaccaacatcattacaatctgattcttgatgataagagagctcagagacatgatggatagtttgccattggacttcacta
taaatctccacccttagaagaacccttagcagatgatctcatttgatcatttttctgagaattgtatggttgttggtgatggagaattaagtagaagggttgacccaagtttgtgaaaataaatttcaactagaatgctgatttttagatgcctatgcaaatatctcatcatgtgatctgtcattaatcggaacattgat
atatgatttgagttctggattttgatattttccctgtatatctattcaactattaaaaaataaaacaagctttacaacagaaatgagcgtgtgaaatcatttttggatcatatctctattgtaatgatgtacattatctaatgtactgtttcttctccttgcaaggagtttttctcttgctacttctcatataccagtct
tctgtttctttttgctgctgttctatcatggcaagaaaatatacttcttgcaaggaatttatatcttactactcacataccagtttcttctgttatgtcttgtcttcttacaagcaatttatatcttactaattctcatatatggatctcttctagttcatttcttgtatgttattttggtttattgttttttattagga
gtcataaaagttgcgatagaggaggttatgtacatgtcattgcacaggtccattgattggtaaatcaaataccagtaatattctgtttcttctctctgctgttctatcatgccgatgatgtgcaatttcttatcattacaaggaatttatatcttactactcagtactcatgtatgaagccattctgttttgtttcatgt
atcttattttggttataattgtttttaattaggagtcacacaagttgtgatagagatgaagctgtgtacatgtaatttgccaagagtcattgattgctaaattaagaatctcttagattttcttgtttttattatttaaatatttggcaaaatatattctgctgttctatcatgtcaaggatgagaattccctatcaaaa
tgatttagttaatgagaattatcaccaagtagccaaattttgcatcgtgtgtttttctctgctttcaagaaacaaatggttctcattatctgtgaatatccctcttatttttcaaaatgctgagatcattatatttgttatcatttcagGTTACGTTGTTTCCAGTGATTTTGATTCCGAAGGAAAATATCGTTGATACC
AATGGAGCAGGAGATGCATTTGTAGGAGGCTTCTTATCTCAATTGGTGTTGGGTAAATCTATTGAGGATTGTGTCAAAGCTGGAAATTATGCAGCAAATGTTGTCATTCAACGATCTGGTTGCACATTTCCTGAGAAGCCAAGTTTTATGTAGTTTTATTTTTGCCTTTTATGGTTATACCAATGCACATTTCAATTTTG
TTGTCCCTGCTGCACATTGGGCAGAGACTTCCAAACAGAGTACCAATGTTTCCTGATTGTTAGGGGAACATTTATGAGCAATTTTTATATTTTTGTACTTAAAAGTTATCTCCAATTTCTATATGTTATTCCAATATTCATTTGCTAATTAAAAAAGTATTTTATGTTTTTGCCCCAGTTTTTGTAAAATATTGTAAGTT
ACTATATTTTTGAGTTTTCCATGTTGCTCTATCTTTAGTTTTGGGACAATTTTTCTGTCAAGAAAGTGGACTTCTATATCAATAATCAGTGTGAACAAGCATCTATGACTTAAGTGATATGATAGACTAGTATTTGCTTCTATGGTCTTCTTGATGTATGCAGAGTATGAG