sp|Q9M2S6|SDIR1_ARATH ----> E3 ubiquitin-protein ligase SDIR1
Intron 1 GTCTAAATTT ... GCTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.43 | 165 | 0 | 45 |
| A2 | 12.12 | 145 | 0 | 20 |
| A3 | 13.3 | 202 | 0 | 31 |
| A4 | 14.97 | 125 | 0 | 22 |
| A5 | 16.95 | 98 | 0 | 20 |
| A6 | 11.28 | 118 | 0 | 15 |
| A7 | 10.86 | 271 | 0 | 33 |
| A8 | 18.9 | 133 | 0 | 31 |
| A9 | 12.59 | 250 | 0 | 36 |
| A10 | 10.66 | 293.5 | 0 | 35 |
>TRINITY_DN132541_c5_g1_i3 from sample A1 / Example spliced isoformGTGGACCTCAGGTGGAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGGTAAATTAAATTTTTAATACATTGATTGCAGCTGTTTGTAAATCTCTTATGCTAGATTAGAAAGGGCATGACAACCATTGAATTTGATTTT
CATGTTTGTTTTATTTAAATACAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGAGGG
AAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTT
CATTCAACAGAAGTTTTACTAATCCATCATATGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAG
GCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAACAGGAGCAATTCGTGATATACATATTGCACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAA
CAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTTGATTTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTA
GGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTTGGAAAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAG
GTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATATCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGGGTTCTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGA
CTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAAACATTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAATCATCTCAAGCCAC
ACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGTGCTTTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATT
GTATGTGCTCTTTGGATTGGCTTGATGTCATGTGGGTAATCGACATGCTTACTGTTACTTAAATTGTAATATAGTGAATTTTCATATACTATTCCTTAATTTGAAAGTGCCCATTGTATCTTTCATATCTTTATGTTATGCTTGCTTGCGGTTTGTCTACATTAATTTACACATTTTCATTCTAAATAGTTGTCATTGAA
CAGTGCAGAACCTCTCCAGTTGGTCATCAGACATCAATAATGTCATCCTCATAATGGGAGCATACCATCCATTT
>TRINITY_DN132541_c5_g1_i1 from sample A1 / Example unspliced isoform:TCAAACACTCCATGGGAAAAAGgtctaaattttacaaataccatcaccatctttgcatgatatttgtgaatctgattgctaaaattttcaaaggttgtctggtttggacagtaggaattgatagttatttatatatttattttgtgagcatttttattgcatttttatcaagctctatagcttaatgctattacagGCAT
TATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATATGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGC
CTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAGGCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAAC
AGGAGCAATTCGTGATATACATATTGCACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGGTACATCTTCTAGCACCTGCCAAGGTTGTTATAGTCTTGGATTTACATAAAAGTTTTCATTGAATGGATGGAATTTGTCTGAAGAGAGGTTGTTATGGTA
Intron 2 GTATTCAGAG ... TATCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.48 | 124 | 6 | 21 |
| A2 | 12.5 | 91 | 0 | 13 |
| A3 | 20.27 | 118 | 1 | 30 |
| A4 | 9.09 | 100 | 4 | 10 |
| A5 | 24.62 | 49 | 1 | 16 |
| A6 | 13.21 | 92 | 0 | 14 |
| A7 | 15.17 | 179 | 0 | 32 |
| A8 | 12.5 | 77 | 0 | 11 |
| A9 | 14.36 | 161 | 0 | 27 |
| A10 | 17.36 | 219 | 0 | 46 |
>TRINITY_DN100798_c0_g2_i1 from sample A4 / Example spliced isoformACTACTTCTCACTCTCACCTCAAAATCAAATCGACGCCTTTGATTCAAATTTAAAATCTATTTGCAGGCGCTGAGTATGGAAGTTGAAACGAGTATCAACAGATAGATGATGTCGTCCCACGATAGATCCCTTCCGAGGCTCTCTTCTCCATCACAGGAACCTCCAGCTCCAGCGGAAGTCCCTGACAGTGCTTCGGATT
CCTCAGATGGCGAACCTACTCAATACCGAAGGCTTTCTGCAAGGTTTTTGCTTGAAAATTCAAGAGGGAAGTCTATTATAGAAGCCGGTTCCTCGTCTACCAGTAACTCCAATTCTATTGCAGGATGCAGCAACTACATTCCAAGGACTTATTCTCCAAATATCCTCCCAATATTGGGTTTAGAAGGTGGAGGCACCGAA
ATAAACCCTGGAATTCCAGCTATGGAGACGAATGACCAACATCATAGTTCCGCGGATGCCCAAACATCCAATTCAGCGGAACCCCAGTTGGCTAATATGGAGGTTGTCGACGAAACCATGCCAAACCCTGAGTTGGGGTTCTCTTTGGGGCGTCCGGATGCTCCTGTTGCTGCATCAGAGGGTTTTGAAGAAGATTTTGT
GTACGCAGCTGATGATGCCAATTCGGAAGATGAGGTTATGGTGGTTTTATCGCCGGGAAATGCAGCAGACAGGAGGAAAAGAGACAAAGGCAAGAGTGGAAGCGAGGGGAAAGGTGCCATGGAAACTCAATTTGTTGATGCAAATGATACAGACGCTACTTCAAGCTGCTCAATTTGTATGGAACCGTGGACCTCAGGTG
GAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTG
CGAGCAGAAAATGAAAAACTTATGTTGGAGCTTTCTTGGTGCAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGAGGGAAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAA
TTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCGGAGAAAATTATAGACTGTCAAGAGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTT
GAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAGGCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAACAGGAGCAATTCGTGATATACATATTG
CACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAACAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTTGAT
TTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTAGGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTTGGA
AAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAGGTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATCTCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGGGTT
CTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGACTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAAACA
TTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAAGCATCTCAAGCCACACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGTGCT
TTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATTGTATGTGCTCTTTGGATTGGTTTGATGTCATGTGGGTAATCGACATGCTTACTGTTACTTAAATTGTAATATAGTGAATTTTCATATACTATTCCTTAATTTGAAAGTGCCC
>TRINITY_DN100798_c0_g2_i4 from sample A4 / Example unspliced isoform:AAAATGAAAAACTTATGTTGGAGGTAATACAACAAGCTTGAAAACTCAATAGTACCATTGACTAAATCGTCTTTTGTATTCAAAGATATTAGAAAGATCCTAAATTAGTTTTTGCTTTTGACCAAAGATGCTCTTCCTCTGGTTTGAGTTGTCCATGGAAGCTCATTCTGATTTATTACTAATTGGTGTGAGGGTTGTTA
AAGCTGCTTTCTCTGCTCATATGTTACTGAATTACTTAAAGCTGTTGCCTGTGCTTTCTCTAATATGTTATGCAAATTATTTTTAACAAATAATGATAGGAGATTAGTTTATCTACTTAAACATTGTTGTTTTTGAGGGACATTGGGAATAGCATATTGTTTAACATTCCAATATATGTAAACTGCCTGCCTACTCAACT
GTTAATATTTTCCTCGATTTACAAGATGTAATCTCTTGTCCTGCTTATCTGCGCTATGTAATGTTGAGAGTTTAGCTTTCTTGGTGCAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGgtattcagagatgtaacttcatgtacatactatgcactctaaacatcaattttcttattttggtttctttggaat
ttatagttgaagagtagatgcttgactgagcgatagtgcatctttggatgtaaatgtgtcatttggttctaagctttcccagtctctcattgtgtgttgttttataaatcactattcataattcctgtctcctttataacaagctgacattaatgcaaattccgggccttcaaattatcatgtagGAGGGAAGGGCAAAT
CATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAG
AAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGTATCTCTTTTCTGTCATTTAGATTGCATTAGTTCCCTAATAGATTAGTGAATCATAGTAAAGAAACTAGATTTGATTTTATTTT
CAAAATGGATCAGTGAGCCGATTATCCAAAGGCAAGCCGGGTGGCCAGATTTAGGAATTAGCGACTGTTGTCACATAGACATAGTGATGCTTTTTAGTTCTTTTATTACTTTCTGTAGGGTGTTGGAAACAGAAACTGGGCTAGAGATTATTGTTTTCTATGCTTGGAATCCTATTATTTAAATTGCTTTGGGCCGGACC
TGCAGTTATTTGAGAATTCTTAGGTTCAGGAACTAAAAAAGGGAAATAAAATCCTATTCTCATGCATTTAATAATTCTAACATTAAATCTACTTAGTTTGCATTTTTCTGTTTGTCATGCAACATTCATAATTCATTTTTATC
Intron 3 GTGAGCTTTG ... ATACATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.22 | 166.2 | 2 | 2 |
| A2 | 12.07 | 104.4 | 1 | 14 |
| A3 | 4.03 | 97.8 | 1 | 4 |
| A4 | 0.94 | 108.2 | 0 | 1 |
| A5 | 3.28 | 60.6 | 1 | 2 |
| A6 | 3.65 | 81.2 | 3 | 3 |
| A7 | 0 | 166.4 | 0 | 0 |
| A8 | 0 | 80.8 | 0 | 0 |
| A9 | 0 | 170.8 | 0 | 0 |
| A10 | 0 | 139.4 | 0 | 0 |
>TRINITY_DN112923_c0_g2_i2 from sample A2 / Example spliced isoformAAAGTGGTAGGAATATTGGCAAGGTAAATTAAATTTTTAATACATTGATTGCAGCTGTTTGTAAATCTCTTATGCTAGATTAGAAAGGGCATGACAACCATTGAATTTGATTTTCATGTTTGTTTTATTTAAATACAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGAT
AGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCTGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGAGGGAAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGG
CATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATATGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTAT
GGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGG
>TRINITY_DN112923_c0_g2_i5 from sample A2 / Example unspliced isoform:TCATTAATCTAGCTAACCCGGgtgagctttgttgttgtaaacataggtactttttaatagcagctttttgttttgtattcacgaatcacaatgataagacactttgcttccagatttactgacatattggtcttataacattgagattcacatacatgcagGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACA
GAGGTGCTGAATGTCAGTTGAAAATACTGGTATCTCTTTTCTGTCATTTAGATTGCATTAGTTCCCTAATAGATTAGTGAATCATAGTAAAGAAACTAGATTTGATTTTATTTTCAAAATGGATCAGTGAGCCGATTATCCAAAGGCAAGCCGGGTGGCCAGATTTAGGAATTAGCGACTGTTGTCACATAGACATAGTG
ATGCTTTTTAGTTCTTTTATTACTTTCTGTAGGGTGTTGGAAACAGAAACTGGGCTAGAGATTATTGTTTTCTATGCTTGGAATCCTATTATTTAAATTGCTTCGGGCCGGACCTGCAGTTATTTGAGAATTCTTAGGTTCATGGAACTAAAAAAGGGAAATAAAATCCTATTTTCATGCATTTAATAATTCTAACATTA
AATCTACTTAGTTTGCATTTTTCTGTTTGTCATGCAACATTCATAATTCATTTTTATCCTACATTTCTTTTGAAGAAACTTCAATGGTAATTCATCTTCATCATACAAATTTCTTTTATGAAATCACAGTGGTACTGATAAAAATGAAGTTT
Intron 4 GTAAATTAAA ... TTAAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28 | 165.1 | 18.1 | 64 |
| A2 | 28.7 | 160.5 | 7.5 | 64.6 |
| A3 | 29.92 | 148.1 | 11.2 | 63.1 |
| A4 | 25.11 | 134.7 | 10.3 | 45 |
| A5 | 31.46 | 82.9 | 3.5 | 38 |
| A6 | 31.86 | 96.3 | 3.6 | 45 |
| A7 | 26.41 | 195.4 | 9 | 70 |
| A8 | 33.7 | 108.3 | 8 | 55 |
| A9 | 25.36 | 189.1 | 7.8 | 64.1 |
| A10 | 26.71 | 231.9 | 12.3 | 84.4 |
>TRINITY_DN132541_c5_g1_i9 from sample A1 / Example spliced isoformATTATGTGTAACTTTTACTTGGACGATATTTCTCCTTTCAACTACTTCTCACTCTCACCTCAAAATCAAATCGACGCCTTTGATTCAAATTTAAAATCTATTTGCAGGCGCTGAGTATGGAAGTTGAAACGAGTATCAACAGATAGATGATGTCGTCCCACGATAGATCCCTTCCGAGGCTCTCTTCTCCATCACAGGAA
CCTCCAGCTCCAGCGGAAGTCCCTGACAGTGCTTCGGATTCCTCAGATGGCGAACCTACTCAATACCGAAGGCTTTCTGCAAGGTTTTTGCTTGAAAATTCAAGAGGGAAGTCTATTATAGAAGCCGGTTCCTCGTCTACCAGTAACTCCAATTCTATTGCAGGATGCAGCAACTACATTCCAAGGACTTATTCTCCAAA
TATCCTCCCAATATTGGGTTTAGAAGGTGGAGGCACCGAAATAAACCCTGGAATTCCAGCTATGGAGACGAATGGCCAACATCATAGTTCCGCGGATGCCCAAACATCCAATTCAGCGGAACCCCAGTTGGCTAATATGGAGGTTGTCGACGAAACCATGCCAAACCCTGAGTTGGGGTTCTCTTTGGGGCGTCCGGATG
CTCCTGTTGCTGCATCAGAGGGTTTTGAAGAAGATTTTGTGTACGCAGCTGATGATGCCAATTCGGAAGATGAGGTTATGGTGGTTTTATCGCCGGGAAATGCAGCAGACAGGAGGAAAAGAGACAAAGGCAAGAGTGGAAGCGAGGGGAAAGGTGCCATGGAAACTCAATTTGTTGATGCAAATGATACAGACGCTACT
TCAAGCTGCTCAATTTGTATGGAACCGTGGACCTCAGGTGGAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGC
CGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGGTAATACAACAAGCTTGAAAACTCAATAGTACCATTGACTAAATCGTCTTTTGTATTCAAAGATATTAGAAAGATCCTAAATTAGTTTTTGCTTTTGACCAAAGATGCTCTTCCTCTGGTTTGAGTTGTC
CATGGAAGCTCATTCTGATTTATTACTAATTGGTGTGAGGGTTGTTAAAGCTGCTTTCTCTGCTCATATGTTACTGAATTACTTAAAGCTGTTGCCTGTGTTTTCTCCAATATGTTATGCAAATTATTTTTAACAAATAATGATAGGAGATTAGTTTATCTACTTAAACATTGTTGTTTTTGA
>TRINITY_DN132541_c5_g1_i3 from sample A1 / Example unspliced isoform:GTGGACCTCAGGTGGAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGgtaaattaaatttttaatacattgattgcagctgtttgtaaatctcttatgctagattagaaagggcatgacaaccattgaatttgatttt
catgtttgttttatttaaatacagTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGAGGG
AAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTT
CATTCAACAGAAGTTTTACTAATCCATCATATGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAG
GCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAACAGGAGCAATTCGTGATATACATATTGCACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAA
CAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTTGATTTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTA
GGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTTGGAAAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAG
GTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATATCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGGGTTCTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGA
CTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAAACATTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAATCATCTCAAGCCAC
ACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGTGCTTTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATT
GTATGTGCTCTTTGGATTGGCTTGATGTCATGTGGGTAATCGACATGCTTACTGTTACTTAAATTGTAATATAGTGAATTTTCATATACTATTCCTTAATTTGAAAGTGCCCATTGTATCTTTCATATCTTTATGTTATGCTTGCTTGCGGTTTGTCTACATTAATTTACACATTTTCATTCTAAATAGTTGTCATTGAA
CAGTGCAGAACCTCTCCAGTTGGTCATCAGACATCAATAATGTCATCCTCATAATGGGAGCATACCATCCATTT
Intron 5 GTACATCTTC ... TGTATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.16 | 33 | 0 | 5 |
| A2 | 25.27 | 68 | 0 | 23 |
| A3 | 17.54 | 47 | 0 | 10 |
| A4 | 21.57 | 80 | 0 | 22 |
| A5 | 12.5 | 7 | 0 | 1 |
| A6 | 25.86 | 86 | 0 | 30 |
| A7 | 26.16 | 127 | 0 | 45 |
| A8 | 21.15 | 123 | 0 | 33 |
| A9 | 31.87 | 124 | 0 | 58 |
| A10 | 16.53 | 101 | 0 | 20 |
>TRINITY_DN110428_c0_g1_i4 from sample A3 / Example spliced isoformCGATATTTCTCCTTTCAACTACTTCTCACTCTCACCTCAAAATCAAATCGACGCCTTTGATTCAAATTTAAAATCTATTTGCAGGCGCTGAGTATGGAAGTTGAAACGAGTATCAACAGATAGATGATGTCGTCCCACGATAGATCCCTTCCGAGGCTCTCTTCTCCATCACAGGAACCTCCAGCTCCAGCGGAAGTCCC
TGACAGTGCTTCGGATTCCTCAGATGGCGAACCTACTCAATACCGAAGGCTTTCTGCAAGGTTTTTGCTTGAAAATTCAAGAGGGAAGTCTATTATAGAAGCCGGTTCCTCGTCTACCAGTAACTCCAATTCTATTGCAGGATGCAGCAACTACATTCCAAGGACTTATTCTCCAAATATCCTCCCAATATTGGGTTTAG
AAGGTGGAGGCACCGAAATAAACCCTGGAATTCCAGCTATGGAGACGAATGGCCAACATCATAGTTCCGCGGATGCCCAAACATCCAATTCAGCGGAACCCCAGTTGGCTAATATGGAGGTTGTCGACGAAACCATGCCAAACCCTGAGTTGGGGTTCTCTTTGGGGCGTCCGGATGCTCCTGTTGCTGCATCAGAGGGT
TTTGAAGAAGATTTTGTGTACGCAGCTGATGATGCCAATTCGGAAGATGAGGTTATGGTGGTTTTATCGCCGGGAAATGCAGCAGACAGGAGGAAAAGAGACAAAGGCAAGAGTGGAAGCGAGGGGAAAGGTGCCATGGAAACTCAATTTGTTGATGCAAATGATACAGACGCTACTTCAAGCTGCTCAATTTGTATGGA
ACCGTGGACCTCAGGTGGAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGCCGTTGTTGATGGAGAGATGCTTC
AGGAGTTGACTTCAGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGAACAAAAATCTGAAGGATAAAAGACATCAAAGAAAGGAGGGAAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCCGAA
GAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCA
GTTGAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAGGCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAACAGGAGCAATTCGTGATATACATA
TTGCACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAACAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTT
GATTTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTAGGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTT
GGAAAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAGGTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATATCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGG
GTTCTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGACTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAA
ACATTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAAGCATCTCAAGCCACACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGT
GCTTTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATTGTATGTGCTCTTTGGATTGGCTTGATGTCATGTGGG
>TRINITY_DN110428_c0_g1_i7 from sample A3 / Example unspliced isoform:GGTAAGAAGCTATCGGTTGTCAGgtacatcttctagcacctgccaaggttgttatagtcttggatttacataaaagttttcattgaatggatggaatttgtctgaagagaggttgttatggtatttgtctgtcagtctttctgaatactgattgccatggtttttgttgtatggcagCTACATCAGTAACAATGTTGTGC
TAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTTGATTTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTAGGGTCCTGAAC
AACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTTGGAAAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAGGTAGGGGGTTC
TACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATATCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGGGTTCTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGACTGGAACTGTA
ATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAAACATTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAAGCATCTCAAGCCACACGAAAATGCA
ATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGTGCTTTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATTGTATGTGCTCT
TTGGATTGGCTTGATGTCATGTGGG
Intron 6 GTAATACAAC ... GAGAGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.69 | 108 | 3 | 9 |
| A2 | 0 | 113 | 0 | 0 |
| A3 | 0.83 | 120 | 0 | 1 |
| A4 | 4.39 | 109 | 0 | 5 |
| A5 | 3.64 | 53 | 1 | 2 |
| A6 | 0 | 112 | 0 | 0 |
| A7 | 0 | 174 | 0 | 0 |
| A8 | 0 | 95 | 0 | 0 |
| A9 | 0 | 155 | 0 | 0 |
| A10 | 0 | 208 | 0 | 0 |
>TRINITY_DN100798_c0_g2_i1 from sample A4 / Example spliced isoformACTACTTCTCACTCTCACCTCAAAATCAAATCGACGCCTTTGATTCAAATTTAAAATCTATTTGCAGGCGCTGAGTATGGAAGTTGAAACGAGTATCAACAGATAGATGATGTCGTCCCACGATAGATCCCTTCCGAGGCTCTCTTCTCCATCACAGGAACCTCCAGCTCCAGCGGAAGTCCCTGACAGTGCTTCGGATT
CCTCAGATGGCGAACCTACTCAATACCGAAGGCTTTCTGCAAGGTTTTTGCTTGAAAATTCAAGAGGGAAGTCTATTATAGAAGCCGGTTCCTCGTCTACCAGTAACTCCAATTCTATTGCAGGATGCAGCAACTACATTCCAAGGACTTATTCTCCAAATATCCTCCCAATATTGGGTTTAGAAGGTGGAGGCACCGAA
ATAAACCCTGGAATTCCAGCTATGGAGACGAATGACCAACATCATAGTTCCGCGGATGCCCAAACATCCAATTCAGCGGAACCCCAGTTGGCTAATATGGAGGTTGTCGACGAAACCATGCCAAACCCTGAGTTGGGGTTCTCTTTGGGGCGTCCGGATGCTCCTGTTGCTGCATCAGAGGGTTTTGAAGAAGATTTTGT
GTACGCAGCTGATGATGCCAATTCGGAAGATGAGGTTATGGTGGTTTTATCGCCGGGAAATGCAGCAGACAGGAGGAAAAGAGACAAAGGCAAGAGTGGAAGCGAGGGGAAAGGTGCCATGGAAACTCAATTTGTTGATGCAAATGATACAGACGCTACTTCAAGCTGCTCAATTTGTATGGAACCGTGGACCTCAGGTG
GAAACCATCGCATCAGCTGTCTTCCTTGTGGTCATTTATTTGGCAGGTCCTGTATAAGGAAATGGATTCGGCAAAGTGGTAGGAATATTGGCAAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGATAGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTG
CGAGCAGAAAATGAAAAACTTATGTTGGAGCTTTCTTGGTGCAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGAGGGAAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAA
TTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCGGAGAAAATTATAGACTGTCAAGAGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTT
GAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAGGCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGAAACAGGAGCAATTCGTGATATACATATTG
CACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAACAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTTTACAGAATGGAATGCTCTTACTTTTTGAT
TTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTAGGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCATTGCAGGCCATACTATGTTCCTGGCTTGGA
AAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAGGTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATCTCCTGAAGGATATGCAGATACTTCCTCCTTTTCAATATCTCCAAGAAAGGGTT
CTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGACTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTACCTGGAAGAGGTTTAGATTGTAAGCAAACA
TTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAAGCATCTCAAGCCACACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATATATATCTATCCAAAATAAGACTAAGTGCT
TTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATTGTATGTGCTCTTTGGATTGGTTTGATGTCATGTGGGTAATCGACATGCTTACTGTTACTTAAATTGTAATATAGTGAATTTTCATATACTATTCCTTAATTTGAAAGTGCCC
>TRINITY_DN100798_c0_g2_i4 from sample A4 / Example unspliced isoform:AAAATGAAAAACTTATGTTGGAGgtaatacaacaagcttgaaaactcaatagtaccattgactaaatcgtcttttgtattcaaagatattagaaagatcctaaattagtttttgcttttgaccaaagatgctcttcctctggtttgagttgtccatggaagctcattctgatttattactaattggtgtgagggttgtta
aagctgctttctctgctcatatgttactgaattacttaaagctgttgcctgtgctttctctaatatgttatgcaaattatttttaacaaataatgataggagattagtttatctacttaaacattgttgtttttgagggacattgggaatagcatattgtttaacattccaatatatgtaaactgcctgcctactcaact
gttaatattttcctcgatttacaagatgtaatctcttgtcctgcttatctgcgctatgtaatgttgagagtttagCTTTCTTGGTGCAGAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGTATTCAGAGATGTAACTTCATGTACATACTATGCACTCTAAACATCAATTTTCTTATTTTGGTTTCTTTGGAAT
TTATAGTTGAAGAGTAGATGCTTGACTGAGCGATAGTGCATCTTTGGATGTAAATGTGTCATTTGGTTCTAAGCTTTCCCAGTCTCTCATTGTGTGTTGTTTTATAAATCACTATTCATAATTCCTGTCTCCTTTATAACAAGCTGACATTAATGCAAATTCCGGGCCTTCAAATTATCATGTAGGAGGGAAGGGCAAAT
CATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAG
AAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGTATCTCTTTTCTGTCATTTAGATTGCATTAGTTCCCTAATAGATTAGTGAATCATAGTAAAGAAACTAGATTTGATTTTATTTT
CAAAATGGATCAGTGAGCCGATTATCCAAAGGCAAGCCGGGTGGCCAGATTTAGGAATTAGCGACTGTTGTCACATAGACATAGTGATGCTTTTTAGTTCTTTTATTACTTTCTGTAGGGTGTTGGAAACAGAAACTGGGCTAGAGATTATTGTTTTCTATGCTTGGAATCCTATTATTTAAATTGCTTTGGGCCGGACC
TGCAGTTATTTGAGAATTCTTAGGTTCAGGAACTAAAAAAGGGAAATAAAATCCTATTCTCATGCATTTAATAATTCTAACATTAAATCTACTTAGTTTGCATTTTTCTGTTTGTCATGCAACATTCATAATTCATTTTTATC
Intron 7 GTAATACAAC ... CTTGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.93 | 122.3 | 3 | 5 |
| A2 | 0 | 123.3 | 0 | 0 |
| A3 | 0.79 | 126 | 0 | 1 |
| A4 | 4.17 | 115 | 0 | 5 |
| A5 | 3.33 | 58 | 1 | 2 |
| A6 | 0 | 123 | 0 | 0 |
| A7 | 0 | 201 | 0 | 0 |
| A8 | 0 | 102 | 0 | 0 |
| A9 | 0 | 180.3 | 0 | 0 |
| A10 | 0 | 233 | 0 | 0 |
>TRINITY_DN100798_c0_g2_i7 from sample A4 / Example spliced isoformAAAGTGGTAGGAATATTGGCAAGGTAAATTAAATTTTTAATACATTGATTGCAGCTGTTTGTAAATCTCTTATGCTAGATTAGAAAGGGCATGACAACCATTGAATTTGATTTTCATGTTTGTTTTATTTAAATACAGTGTCCTCAGTGTAATAAGATGTGTAAACTCAAGGATATAAGAACACTATATGTATCACGGAT
AGCCGTTGTTGATGGAGAGATGCTTCAGGAGTTGACTTCAGTGCGAGCAGAAAATGAAAAACTTATGTTGGAGAACAAAAATCTGAAGGATAAAAGACATCAAAGAAAGGAGGGAAGGGCAAATCATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGG
CATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCGGAGAAAATTATAGACTGTCAAGAGTACCATATGGTTCATTCAACAGAAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTAT
GGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGATGAGTTGATTTTACAAGGAGCAAAATATTTTGACATTGATGCAGTTAGTCAAATGTTCTTAGTTTCTCAGAAGGCTTCTGACCTGTGTAGTCAGCACTTTCTCACAAAAATTAGCTTTTTGGCTAGATCAGGAGGTGAACATATACATCTTCCCAATGA
AACAGGAGCAATTCGTGATATACATATTGCACCTGTTGGGACAAAAGATCCTGGTAGACTGGCTCTAGTAGCTTCTACGGGTAAGAAGCTATCGGTTGTCAGCTACATCAGTAACAATGTTGTGCTAACCTATAATTTACAGAGTCCAGCATGGTCATGTGCATGGGACTCCAGTGATCCAAACAGAGTTTATGCTGGTT
TACAGAATGGAATGCTCTTACTTTTTGATTTACGAATGACATCATCCCCAGTAAATGCCATCAAAGGTTTGGGTCCCCAGCCAATTCATACATTGCACTCAGTTGCATGCTCTAGGGTCCTGAACAACGAGTATAGTGGAAGGACAATTCTGAGTGCATCTTGTTCCGGGCCTGCACTCTGGCATGTTGACGATCAGCAT
TGCAGGCCATACTATGTTCCTGGCTTGGAAAGTCAAGGTGTTTGTATATCGCTTGCTTATTATGGTCTTGGTGATATTGGTGTAGCTTCATATCGTCCAAAGATAGCTTCACAGGTAGGGGGTTCTACATGCATTTCACCATCTCAGGAGGGTTTCATTTCTTCTCAGTCCGGATCTCCTGAAGGATATGCAGATACTTC
CTCCTTTTCAATATCTCCAAGAAAGGGTTCTCATTACATCCTCAGAAAGAGTCACAGAAGTTCATCCTCAGGAGAAATTTTTACTCCAGATAGTTTTAACAGTCGTGGTATTGACTGGAACTGTAATCGTGAGAAGGTTATGTCTGGACATGTTCGTGCAGTGGGAACAACAAAATCTGCAATTTTGACACTACCTGTAC
CTGGAAGAGGTTTAGATTGTAAGCAAACATTATTTGCATATGGGGATGAACTTAGTAGAGCAGTGACAGTTTGGGATACAGAGACTTTATGTGTGACAAAGCATCTCAAGCCACACGAAAATGCAATTCTAGATGTGAAACATGCTCAGATTGAAGGGAACGATATACTTGGTTCTGTGAGTGAGAAAACCTTGCAAATA
TATATCTATCCAAAATAAGACTAAGTGCTTTATCATTTTTAAAATTCTCTTCCAATTGTTCTACAATATCTCTACTCCATTTGAGTATGGAGTTTTCAGATAACTTGCCAAATTGTATGTGCTCTTTGGATTGGTTTGATGTCATGTGGGTAATCGACATGCTTACTGTTACTTAAATTGTAATATAGTGAATTTTCATA
TACTATTCCTTAATTTGAAAGTGCCC
>TRINITY_DN100798_c0_g2_i4 from sample A4 / Example unspliced isoform:AAAATGAAAAACTTATGTTGGAGgtaatacaacaagcttgaaaactcaatagtaccattgactaaatcgtcttttgtattcaaagatattagaaagatcctaaattagtttttgcttttgaccaaagatgctcttcctctggtttgagttgtccatggaagctcattctgatttattactaattggtgtgagggttgtta
aagctgctttctctgctcatatgttactgaattacttaaagctgttgcctgtgctttctctaatatgttatgcaaattatttttaacaaataatgataggagattagtttatctacttaaacattgttgtttttgagggacattgggaatagcatattgtttaacattccaatatatgtaaactgcctgcctactcaact
gttaatattttcctcgatttacaagatgtaatctcttgtcctgcttatctgcgctatgtaatgttgagagtttagctttcttggtgcagAACAAAAATCTGAAGGATAAAAGACGTCAAAGAAAGGTATTCAGAGATGTAACTTCATGTACATACTATGCACTCTAAACATCAATTTTCTTATTTTGGTTTCTTTGGAAT
TTATAGTTGAAGAGTAGATGCTTGACTGAGCGATAGTGCATCTTTGGATGTAAATGTGTCATTTGGTTCTAAGCTTTCCCAGTCTCTCATTGTGTGTTGTTTTATAAATCACTATTCATAATTCCTGTCTCCTTTATAACAAGCTGACATTAATGCAAATTCCGGGCCTTCAAATTATCATGTAGGAGGGAAGGGCAAAT
CATATGGAAATCGAATGTCTCAAGCTTCAGAAAGAAAAACTGCTTCGAGAAATTCAAACACTCCATGGGAAAAAGGCATTATTGGGAGCAACTATGCCTGAAGAATTTGGGTCTCCTAGTGGATTTCGGAAACAATTTGTAGCTGAGGAATGCAGAGAAAATTATAGACAGTCAAGTGTACCATATGGTTCATTCAACAG
AAGTTTTACTAATCCATCATACGACTTCATTAATCTAGCTAACCCGGGTTCATTTGTTTCTGCCCGATCTCCTTATGGCCTCAACAGAGGTGCTGAATGTCAGTTGAAAATACTGGTATCTCTTTTCTGTCATTTAGATTGCATTAGTTCCCTAATAGATTAGTGAATCATAGTAAAGAAACTAGATTTGATTTTATTTT
CAAAATGGATCAGTGAGCCGATTATCCAAAGGCAAGCCGGGTGGCCAGATTTAGGAATTAGCGACTGTTGTCACATAGACATAGTGATGCTTTTTAGTTCTTTTATTACTTTCTGTAGGGTGTTGGAAACAGAAACTGGGCTAGAGATTATTGTTTTCTATGCTTGGAATCCTATTATTTAAATTGCTTTGGGCCGGACC
TGCAGTTATTTGAGAATTCTTAGGTTCAGGAACTAAAAAAGGGAAATAAAATCCTATTCTCATGCATTTAATAATTCTAACATTAAATCTACTTAGTTTGCATTTTTCTGTTTGTCATGCAACATTCATAATTCATTTTTATC