sp|F4IUX6|RENT2_ARATH ----> Regulator of nonsense transcripts UPF2
Intron 1 GTGAGTGACA ... TTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.49 | 82 | 16 | 2.3 |
| A2 | 25.79 | 57.7 | 20 | 6.7 |
| A3 | 20.64 | 51.3 | 13 | 4.7 |
| A4 | 25.83 | 11 | 3.7 | 1.7 |
| A5 | 26.39 | 11.3 | 4 | 0.7 |
| A6 | 0 | 3.7 | 0 | 0.7 |
| A7 | 13.78 | 31.3 | 5 | 1.3 |
| A8 | 27.99 | 15.5 | 6 | 0 |
| A9 | 19 | 25.8 | 6 | 1.3 |
| A10 | 2.57 | 38 | 1 | 2 |
>TRINITY_DN122691_c0_g1_i5 from sample A2 / Example spliced isoformCTACTTTAAAACAAATCCTCAATAGACTTTAATTCCGATTCAGAAGAGGAAAAGACCCTGCAACCATGCTTCACAGATTGGGAGTGGTGCCCAAACGGTTTTTGTTTCCTACTTAAGTTTGCACACCTGTATGTTTCATTTTGCTTTGCTTTACGTTACTATTTACAGAAATCTCAACGCTAGCACTTGTGTCGAGCGGA
GCTTTGGTGGACGGAAAAGAAAGAAACCGAGGGAAACGTGAAGTGCGATTTGACCAGGAACCAGGTAAATTCTGTACTGCAATGGCTCGGTCCAAGGAGAAAGTTGAAGAGGCAAGTGCAGAGAAGGGGGACTTGGTGCAAGCAGAAAATGCAGAAGATGAAAGCAGAATGGGACGTCAACACCAAAACAGTAAGCAAGA
TGACGAGGAGGCTCAAGCTCGTCTTGAAGAGCTCAAAAAATTAAATGAAGCAAAGTCTGCAATGCGCAGAGCTAATTTAAATCCAGAAAGGCCAGATTCAGTTTTCCTGAGGTCTCTAGATTCTAGCATCAAGCGTAACACAGCAGTCATAAAAAAACTTAAACTGATAAATGAAGAGCAGCGAGAAGGTTTGCTAGAAG
AATTGAAATCTGTTAACTTGAGCAAATTTGTCAGTGAAGCTGTAACAGCTATCTGTGATGCAAAACTTAGAAGTTCTGACATCAATGCTGCTGTTCAGGTTTGCTCACTACTTCATCAAAGGTACAAGGATTTTTCACCCAGTTTGATACAGGGGCTCTTGAAAGTCTTCTTTCCTGGCAAGACTATTGATGATCTGGAC
ATAGATCGAAGCTCAAGAGCAATGAAGAAACGAAGCACGCTTAAGCTTCTTATGGAACTCTATTATGTTGGTGTTATAGAGGATGCTAGTATTTTCATAAATATCATAAAGGACCTTACCAACACAGAGCATTTTAAGGACAGGGATACTACTCAAATGAATCTATCACTGCTTGTAAGTTTTGCTCGTCAAGGGAGAGT
CTTCATAGGGCTTCCACTTTCAGGCCAAGAAGTACAGGACGAGCTCTGTAAGGATCTCAGCATTACTGTGGAACAGAAGAAGCTTCTTAGGAAGGCATTTCAGTCATTCTATGATGCATCAGCAGATCTTCTTCAATCAGAGCATTCTTCACTTCGACAAATGGAGCAAGAGAATGCAAAAATGCTGAATGCAAAGGGAG
AACTCAGTGAAGAAAATGCAATTACATATGAAAAACTGAGAAAATCTTATGAACACTTGTTTCGGAGCGTCTCTTCTTTGGCTGAAGCACTAGATATGCAGCCTCCTGTCATGCCAGATGATGGCCACACTACAAGAGTTACATCTGGCGAAGATGGATCCTCAGCTGCCACTACAAAGGATGCTTCCACTCCTGAACCT
GTTTGGGATGATGATGATACAAAAGCCTTCTATGAGAGCTTACCGGATCTTAGGGCATTTGTTCCTGCAGTATTGCTGGGAGAAACAGAACCAAAGACCAGTGAGCAATCACATAAGGTTCCTGAACAACAGCAGGAGTTGTCGTTTGAGCCAGAGCAAGGTCCTTTGTTCATCTCAGAAGCAGCAGATGGAATCCAAGA
GTCTGAAACCTTAAGAGGAGAGGGGACATCTGATGATAAGTCCAAGGACAAAGAAGAGAAAGACAAGGAAAAAGGTAAAGAAGTGGAAAAAGAGAAGTGGAAGGAGAGAGACACTGATAAGAAGGGAGATAAAGAAATTGAGAAGGATAAAGTAAAAAACCTTGATGGTGCAAACTTAGAAAGCCTCTTGCAACGACTTC
CGGGTTGTGTTAGTCGTGACCTTATTGACCAGTTGACAGTAGACTTCTGTTATCTGAATTCAAAAAGTAACCGGAAAAAGCTTGTGAGAGCATTATTCAACGTACCTCGGACATCCTTAGAATTATTGCCCTATTATTCAAGAATGGTGGCAACATTGTCGACGTGCATGAAAGATGTAGCTTCAATGCTTCTGCAGCTG
CTAGAAGAAGAGTTCAACTTCTTAATAAATAAAAAGGATCAAATGAACATTGAAACAAAGATCAGAAATATAAGGTTCATTGGGGAATTAGCAAAGTTCAAAATTACCTCAGCAATTCTTGTATTTACCTGCTTGAAGGCCTGTTTGGATGACTTCACACATCACAATATTGATGTTGCATGCAATTTGCTTGAAACCTC
TGGACGCTTCTTGTATCGTTCACCAGAAACAACCGTACGCATGGCAAACATGTTGGAAATAATGATGCGACTGAAAAATGTGAAAAATCTTGATGCTCGGCACAGTACATTGGTTGAGAATGCTTATTATCTTTGTAAGCCTCCTGAAAAATCTGCCAGGGTTTCTAAAGTTCGACCTCCTTTGCATCAGTATATAAGGA
AACTACTTTTTGCAGACCTGGATAAACAGTCTACAGAGCATGTTTGCCGTCAGCTTCGCAAACTACCTTGGAGTGAATGTGAACCTTATGTCTTGAAGTGTTTTATGAAGGTTCACAAGGGAAAATATAGTCAAGTACACCTTATCGCATCTCTTACTGCAGGATTAAGTCGTTACCAAGAAGCTTTTGCTGTTGCTGTT
GTAGATGAGGTTTTGGAGGAAATCAGGCTAGGACTTGAGTTGAATGACTATGGAATGCAGCAGCGGCGTATAGCACATATGCGCTTTCTAGGAGAGCTATACAATTATCGTCTTGTTGATTCATCTGTGATCTTTGATACTCTTTATTTGGTTCTTTTCTTTGGACATGGTACTGCAGAGCTTGACACACTGGATCCACC
AGAGGATTCTTTTCGCATTCGGATGGTGATAACTGCTCTTCAGACATGCGGCCACTTTTTTGATAGAGGTTCTTCTAAACGGAGGCTTGATAAGTATTTGGTCTTTTTTCAAAGATATATTCTTAGCAAAGGGGCCATACCCCTGGATGTTGAGTTTGATCTCCAGGATCTTTTTGCTGACTTGCGGCCAAAAATGATTC
GATATTCATCCACTGAGGAAGCAGATGCTGCTCTGGTTGAGTTAGAAGAGCAGGAACGTGTTGTATCTTCTGAAAAGATGGGCAGTGAAAGACATTCAGATACAGAAGGAGGTAGGTCTGCATCCCGTTTTGCTGTTCCTGTTGTAGGGAATGGACAGACAACAATGAATGGAATGGAGGAAAATGGTATGGTGCTTGAT
GATGGAGAGAGTGAAAGTGAATTGGAAAGTAGTAGCTTGGAGCCTGATGGTCATGAAGATGAGGAGGAGTTGGATCATGATCACGAAGACAAGTATGTGGATCATGATGATGAAGGTGATGATGAAAATGAAGATGAGGATGGTGGAGAACCTGTGGCCTCTGAAGAGGAAGAGCATGTGCAGGTAAGACGGAAGAAACT
AATGGAAGTTGATCCAGCAGAGGAAGCTGATTTTGAGCGTGAGTTAAGGGCATTTATGCAGGAGAGTTTAGATTCTCGCAAATTAGAACTACGGGCACGTCCTATGCTAAACATGGCAATTCCTATGAATCTTTTTGAAGGATCCAAAGAACACAGCCGAACAACTGAGGTAGAAAGTGGAGATGAGGTCTTAGATGAAG
AAAGTGGTGGAAACAATGTTTCTTTTCGAGTTCTTGTGAAAAAAGGCAACAAGCAGCAAACCAGGCAAATGTATATTCCACGTGATTGCTCTCTTGTGCAAAGTACAAAACAGAAAGAAGCAGCTGAACTTGAAGAGAAACAGGACATAAAGAGGTTGGTTCTTGAATACAATGAGCGGGAGGAAGAGGATTCATCCAGT
TCTGCAGCACAGCCAATTAATTGGTCTCCTGCAAATTCAGGTATGTCAAATAGAATGCCTAGTGGCCGGGGAGGATGGGAAGGTGCTGGACGATCAGGTGGTGCACGTCAAAGGCATCATCCCACAGGTCCTAGCCATGGTCGACGGCGATAGTGTGGAAATAAAATCATTTTCATGTTGTAACTTGGTTCTATCTAGGG
TTGAGTTGGATCATTCCTCCCAGATGTCTCTCATGCAACCAAAGCCAAGAAATGGTTGTGTTTATGCTATGAATGGTGTTACTTTGAGAGGTTTCCTAATTTGAACTTTGCTATTAATTATATGAGATTGAAGCATGTATCCTTCTACAAGTGTACTCTGCAATTCTGGGATTCAGTGAGATCACTGCTGCCGCTTTTAA
CAGGTATCTTCCCCAAGATCTTATGTCAGTTTGAAATTTACCAACCTTAGATTCAGTGTAGATGGCATTAGCCAAGTTTGATTCCTAAAATATAGAGAGAATAAAGTTGGTTGTCTTGAAGAAAAGTAAGCTGTTTTACTGCAGCAGTATGGCACAACTACAGCACTGCTGTCGTAATTTTCAAGAAAAGCAGGACAAGT
GTTGTCATATATAGTATGATTTAATTTCTATACATTTATCTGTTCTGTACGTGGCATTGAAATCATGACAATATTTTTGCACCCTTTGGAGGCAAGCCTGAATATATTTACAAGAGCTTGAACTTTTGACCAGTGAAAAATACAGAAAACAACCATTTCTATTACCGCTTGAGGAGGATGAAGTCTTAATGTTTGGTGTC
CTTTTTCTTGTTTGTTTGTGGTTTAAACTTTTGGAATTATAGTCATGATCTATTAGTAAATGGTTCTTTGGGGTAATGGTATGTGATGCCAATTAAAATGGAAGCATCTGTCCTTGAGTTTGGTTCTTTTTAGGCACTGGATGTGACTTTCATTTCAATATGCTGTGTTGATGGTTTGCTTGTTT
>TRINITY_DN122691_c0_g1_i18 from sample A2 / Example unspliced isoform:GACAAAGAAGAGAAAGACAAGGAAAAAGGTAAAGAAGTGGAAAAAGAGAAGTGGAAGGAGAGAGACACTGACAAAGAAGAGAAAGACAAGGAAAAAGGTAAAGAAGTGGAAAAAGAGAAGTGGAAGGAGAGAGACACTGATAAGAAGGGAGATAAAGAAATTGAGAAGGATAAAGTAAAAAACCTTGATGGTGCAAACTT
AGAAAGCCTCTTGCAACGACTTCCGGGTTGTGTTAGTCGTGACCTTATTGACCAGTTGACAgtgagtgacatgcttattattagatatttttgttgaggtttctaatgagaaatgaaacactatgaatatgggagtgctctattatgattttttctgcagGTAGACTTCTGTTATCTGAATTCAAAAAGTAACCGGAAAA
AGCTTGTGAGAGCATTATTCAACGTACCTCGGACATCCTTAGAATTATTGCC
Intron 2 GTATGAACAG ... CCATCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.91 | 37 | 12 | 2 |
| A2 | 21.74 | 27 | 9 | 6 |
| A3 | 14.29 | 39 | 7 | 6 |
| A4 | 26.53 | 18 | 9 | 4 |
| A5 | 14.29 | 12 | 4 | 0 |
| A6 | 16.67 | 5 | 1 | 1 |
| A7 | 24 | 19 | 8 | 4 |
| A8 | 11.11 | 12 | 2 | 1 |
| A9 | 23.08 | 10 | 4 | 2 |
| A10 | 21.05 | 15 | 3 | 5 |
>TRINITY_DN122691_c0_g1_i13 from sample A2 / Example spliced isoformCTACTTTAAAACAAATCCTCAATAGACTTTAATTCCGATTCAGAAGAGGAAAAGACCCTGCAACCATGCTTCACAGATTGGGAGTGGTGCCCAAACGGTTTTTGTTTCCTACTTAAGTTTGCACACCTGTATGTTTCATTTTGCTTTGCTTTACGTTACTATTTACAGAAATCTCAACGCTAGCACTTGTGTCGAGCGGA
GCTTTGGTGGACGGAAAAGAAAGAAACCGAGGGAAACGTGAAGTGCGATTTGACCAGGAACCAGGTAAATTCTGTACTGCAATGGCTCGGTCCAAGGAGAAAGTTGAAGAGGCAAGTGCAGAGAAGGGGGACTTGGTGCAAGCAGAAAATGCAGAAGATGAAAGCAGAATGGGACGTCAACACCAAAACAGTAAGCAAGA
TGACGAGGAGGCTCAAGCTCGTCTTGAAGAGCTCAAAAAATTAAATGAAGCAAAGTCTGCAATGCGCAGAGCTAATTTAAATCCAGAAAGGCCAGATTCAGTTTTCCTGAGGTCTCTAGATTCTAGCATCAAGCGTAACACAGCAGTCATAAAAAAACTTAAACTGATAAATGAAGAGCAGCGAGAAGGTTTGCTAGAAG
AATTGAAATCTGTTAACTTGAGCAAATTTGTCAGTGAAGCTGTAACAGCTATCTGTGATGCAAAACTTAGAAGTTCTGACATCAATGCTGCTGTTCAGGTTTGCTCACTACTTCATCAAAGGTACAAGGATTTTTCACCCAGTTTGATACAGGGGCTCTTGAAAGTCTTCTTTCCTGGCAAGACTATTGATGATCTGGAC
ATAGATCGAAGCTCAAGAGCAATGAAGAAACGAAGCACGCTTAAGCTTCTTATGGAACTCTATTATGTTGGTGTTATAGAGGATGCTAGTATTTTCATAAATATCATAAAGGACCTTACCAACACAGAGCATTTTAAGGACAGGGATACTACTCAAATGAATCTATCACTGCTTGTAAGTTTTGCTCGTCAAGGGAGAGT
CTTCATAGGGCTTCCACTTTCAGGCCAAGAAGTACAGGACGAGCTCTGTAAGGATCTCAGCATTACTGTGGAACAGAAGAAGCTTCTTAGGAAGGCATTTCAGTCATTCTATGATGCATCAGCAGATCTTCTTCAATCAGAGCATTCTTCACTTCGACAAATGGAGCAAGAGAATGCAAAAATGCTGAATGCAAAGGGAG
AACTCAGTGAAGAAAATGCAATTACATATGAAAAACTGAGAAAATCTTATGAACACTTGTTTCGGAGCGTCTCTTCTTTGGCTGAAGCACTAGATATGCAGCCTCCTGTCATGCCAGATGATGGCCACACTACAAGAGTTACATCTGGCGAAGATGGATCCTCAGCTGCCACTACAAAGGATGCTTCCACTCCTGAACCT
GTTTGGGATGATGATGATACAAAAGCCTTCTATGAGAGCTTACCGGATCTTAGGGCATTTGTTCCTGCAGTATTGCTGGGAGAAACAGAACCAAAGACCAGTGAGCAATCACATAAGGTTCCTGAACAACAGCAGGAGTTGTCGTTTGAGCCAGAGCAAGGTCCTTTGTTCATCTCAGAAGCAGCAGATGGAATCCAAGA
GTCTGAAACCTTAAGAGGAGAGGGGACATCTGATGATAAGTCCAAGGACAAAGAAGAGAAAGACAAGGAAAAAGGTAAAGAAGTGGAAAAAGAGAAGTGGAAGGAGAGAGACACTGATAAGAAGGGAGAGAGAGAAAACGAGAAAGATAAAGTAAAAAGCCTTGATGGTGCAAACTTAGACAGCCTCTTGCAACGGCTTC
CGGGTTGTGTTAGTCGTGATCTTATTGACCAGTTGACAGTAGACTTTTGCTATCTGAATTCGAAAAGCAACAGGAAAAAGCTCGTGAGAACATTATTCAACGTGCCTCGGACATCCTTAGAATTATTGCCTTATTATTCAAGAATGGTAGCGACATTGTCCACTTGCATGAAAGATGTAGCTTCAATGCTTCTGCAGCTG
CTAGAAGAGGAGTTCAATTTTTTAATAAATAAGAAGGATCAAATGAACATTGAAACAAAAACGAGAAATATAAGATTCATTGGGGAATTGGCAAAGTTCAAAACTGCTCCGGCAAGTCTTGTATTTACCTGCTTGAAGGCCTGTTTGGATGACTTCACACATCACAATATTGATGTTGCATGCAATTTGCTTGAAACCTC
TGGACGCTTCTTGTATCGTTCACCAGAAACAGCCATACGCATGGCAAACATGATAGAAATAATGATGCGACTGAAAAATGTGAAAAATCTTGATGCTCGGCACAGTACATTGGTTGAGAATGCTTATTATCTTTGTAAGCCTCCTGAAAAATCTGCCAGGGTTTCTAAAGTTCGACCTCCTTTGCATCAGTATGTGCGGA
AACTACTTTTTTCAGACTTGGATAAACAGTCTATAGAGCATGTCTGCCGTCAGCTTCGCAAACTACCCTGGAGTGAATGTGAACCATATGTCTTGAAGTGTTTTATGAAGGTTCACAAGGGAAAGTATAGTCAAGTATACCTTATTGCATCTCTTACGGCAGGCTTAAGTCGTTACCAAGAAGCATTTGCTGTTGCTGTT
GTTGATGAGGTTTTGGAGGAGATCAAGCTAGGACTTGAATTGAATGACTACGGAATGCAGCAGCGACGTATAGCACATATGCGCCTTCTAGGAGAGCTATACAGTTATCGTCTTATTGATTCATCTGTGATATTTGATACTCTTTATTTGGTTCTTTTCTTTGGACATGGTACTGCAGAGCTTGACACACTGGATCCACC
AGAGGATTCTTTTCGCATTCGGATGGTGATAACTGCTCTTCAGACATGCGGCCACTTTTTTTGATAGAGGTTCTTCTAAACGGAGGCTTGATAAGTATTTGGTCTTTTTTCAAAGATATATTCTTAGCAAAGGGGCCATACCCCTGGATGTTGAGTTTGATCTCCAGGATCTTTTTGCTGACTTGCGGCCAAAAATGATT
CGATATTCATCCA
>TRINITY_DN122691_c0_g1_i19 from sample A2 / Example unspliced isoform:GAAATAATGATGCGACTGAAAAATGTGAAAAATCTTGATGCTCGGCACAGTACATTGGTTGAGAATGCTTATTATCTTTGTAAGCCTCCTGAAAAATCTGCCAGGGTTTCTAAAGTTCGACCTCCTTTGCATCAGgtatgaacagatatttcagttagctgtgggctttgatttattaagagatccatctttagTATGTG
CGGAAACTACTTTTTTCAGACTTGGATAAACAGTCTATAGAGCATGTCTGCCGTCAGCTTCGCAAACTACCCTGGAGTGAATGTGAACCATATGTCTTGAAGTGTTTTATGAAGGTTCACAAGGGAAAGTATAGTCAAGTATACCTTATTGCATCTCTTACGGCAGGCTTAAGTCGTTACCAAGAAGCATTTGCTGTTGC
TGTTGTTGATGAGGTTTTGGAGGAGATCAAGCTAGGACTTGAATTGAATGACTACGGAATGCAGCAGCGACGTATAGCACATATGCGCCTTCTAGGAGAGCTATACAGTTATCGTCTTATTGATTCATCTGTGATATTTGATACTCTTTATTTGGTTCTTTTCTTTGGACATGGTACTGCAGAGCTTGACACACTGGATC
CACCAGAGGATTCTTTTCGCATTCGGATGGTGATAACTGCTCTTCAGACATGCGGCCACTTTTTT
Intron 3 GTGGGTATTC ... GTTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44 | 7 | 8 | 3 |
| A2 | 51.22 | 10 | 10 | 11 |
| A3 | 65 | 7 | 18 | 8 |
| A4 | 56.52 | 5 | 4 | 9 |
| A5 | 50 | 1 | 2 | 0 |
| A6 | 71.43 | 1 | 4 | 1 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | 33.33 | 2 | 2 | 0 |
| A9 | 50 | 2 | 2 | 2 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN122032_c0_g1_i3 from sample A3 / Example spliced isoformCGATTCAGAAGAGGAAAAGACCCTGCAACCATGCTTCACAGATTGGGAGTGGTGCCCAAACGGTTTTTGTTTCCTACTTAAGTTTGCACACCTGTATGTTTCATTTTGCTTTGCTTTACGTTACTATTTACAGAAATCTCAACGCTAGCACTTGTGTCGAGCGGAGCTTTGGTGGACGGAAAAGAAAGAAACCGAGGGAA
ACGTGAAGTGCGATTTGACCAGTTTATCCACCAAGTTGCCGATGTGGTCATGGTTCAGCAGTGAAGGGTGCTATCTCAGGCCACCCACTAAGGTTCAATTCCCCAGGGGCACAGTTGTGGGCAGATGCAATTCCTGG
>TRINITY_DN122032_c0_g1_i9 from sample A3 / Example unspliced isoform:CGATTCAGAAGAGGAAAAGACCCTGCAACCATGCTTCACAGATTGGGAGTGGTGCCCAAACGGTTTTTGTTTCCTACTTAAGTTTGCACACCTGTATGTTTCATTTTGCTTTGCTTTACGTTACTATTTACAGAAATCTCAACGCTAGCACTTGTGTCGAGCGGAGCTTTGGTGGACGGAAAAGAAAGAAACCGAGGGAA
ACGTGAAGTGCGATTTGACCAGgtgggtattcaatttcttcttggaaattctgggatccatcatcgaattctgcttccaacaagctccctctgtgttttttagtttcaggcctcttgttttgtgtttttttcattatcatctgaaccaaatttcaatcccttgcagcattctgctataggatctaccaaaatgagattga
gcactaatttttcttatatacgagcaaactcttataagaaaaatcaaatgtatcgaagagcctgcccctctttctaacccaccaagctcaatctacagctttgtttttttttctttgtcatgaatgttcagggctcagaaaatacgagttcatgacatgcttttgaatttgacgtcttttaatgtgacatgtttcggaaa
ggacagtatgatagattcttaattactgaacctccatagtttcttatttaaacactgctctgcgcatctctctattcagtgcctgcctgtatgttttgtcagTTTATCCACCAAGTTGCCGATGTGGTCATGGTTCAGCAGTGAAGGGTGCTATCTCAGGCCACCCACTAAGGTTCAATTCCCCAGGGGCACAGTTGTGG
GCAGATGCAATTCCTGG