NA ----> NA
Intron 1 GTTTTCTAAT ... TTCTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.5 | 93.5 | 184 | 186 |
| A2 | 68.48 | 98.5 | 189 | 183 |
| A3 | 69.05 | 118.5 | 237 | 216 |
| A4 | 69.25 | 65.5 | 129 | 119 |
| A5 | 72.81 | 23 | 53 | 52 |
| A6 | 68.81 | 372.5 | 707 | 688 |
| A7 | 69.92 | 449 | 884 | 858 |
| A8 | 68.45 | 441 | 817 | 808 |
| A9 | 70.89 | 489 | 1014 | 926 |
| A10 | 71.21 | 362 | 757.5 | 728 |
>TRINITY_DN94674_c0_g1_i2 from sample A4 / Example spliced isoformTATATTCTGATGGGTTGGGCGGTAAAGTTAGGGATGCTTTGTTAAAACGCTATTTCTTCCGATTTCCATTTGGGAAAACCCCCACACAGACCAAAACGCTGCTAAGGACTACTGACAGAGTCCATTTCTGAAACCTTGATACAGACAAAAGTCGCAAAAGACTCGATAATCCGACAGAGCTCATTTGCGTCGAAAGAAGA
CATTAATTTATCAAAGGATCAACTGAATCCAAGCTTACCCACTTCCGGGAATTTGCATTTTGCAGCAAAAATGTTCAAAAAAATCAAGTAAAGGCATCTGTGCAACGTAAGATCCGTCAAAGCATTGCAGAGGAGTATCCAGATTTGGAGCCCATACTAGAAGATTTACTTCCAAAGAAATCTCCTCTTATAGTTGCAAA
ATGCCAGAATCACATTAATCTGATTTTGGTGAATAATGTGCCACTCTTCTTCAATGTTCGAGATGGTCCTTACATGCCGACTCTGCGTCTATTACATCAATATCCAAACATAATGAAAAAGCTGCAGGTAGACAGGGGGGCAATCAAATTTGTCCTTGCTGGGGCAAACATCATGTGTCCTGGACTCACATCTCCTGGTG
GCGCTTTGGACGATAACATTCCTGCAGATTCACCTGTGGCAGTAATGGCTGAAGGAAAGGAGAATGCACTTGCAATTGGATTTACAAAGATATCAGCAAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTGGATAACATGCATTATCTCAATGATGGCCTTTGGAAGACGATGCAGCTGAACTGATTGCAGCTGGGA
TGCAGAAGAAAAAATGCTCATGTATTTCTTGAAATCATTGTCATAGATAGACTACAATTTTTCTATATCTTGTTTTAATGTATCTTTCCAGGACTCAGGGTTTCTTCCATGCATAATTAGTTTGAAAAAAGCATTTGTGTGCATTTGCGAATGTTCCAAATTAGGATATTGAAAACTAAAAAGCATCTTTTATATAGGTC
TATGAAATGGAACTACTTGGTTGTAGCCCAAGTACTTGAATACAGGCTGTGTACTATATATTGTCCAATAATTTGACTAAACTATAGAATTGCTTACATATTATTTCAGGATTTATGTAATGTCCACTGCATTATCTGAATACGATGTATGGTCTTTATGTTATCTGGAGATTTTACTGCATAGAAAATTACTGTTGAGT
ACACTGGTATCCTCAAAGGGTATGGTTGGGTTAGCTCTGCTGATTGAAGGGGCTTTTGTCCCAAGCACCTAAAAGATTTGGCGTTAACTGCAGTTAATCTTACAAGTTCACAACATCATGGGAAGGAATAATATTGGTAAACATATTAGATTGCAGCACTTACTGGAATACCAAATCCTGCAAACACTCTTAGCAGTGTA
AATTTGAATGAATTCTCATATCCTGTTCTCTTTCTCAACAGAGAGCACAGACAAAACACACTGCAAGTTTTCTTGACATCTCTATAGAATATAAACTTGCATGAATATTCACAACCTACAATATATCTGAATATGTAGATAAAATGCAACGTATTGTCATACCTTTAGTTGTCCATTTAGATTAAAACATCTTGTGGGGA
ACTAAGCAAGAGCCGGTTTGTCCTGGCTGATATCGGAT
>TRINITY_DN94674_c0_g1_i1 from sample A4 / Example unspliced isoform:TATATTCTGATGGGTTGGGCGGTAAAGTTAGGGATGCTTTGTTAAAACGCTATTTCTTCCGATTTCCATTTGGGAAAACCCCCACACAGACCAAAACGCTGCTAAGGACTACTGACAGAGTCCATTTCTGAAACCTTGATACAGACAAAAGTCGCAAAAGACTCGATAATCCGACAGAGCTCATTTGCGTCGAAAGAAGA
CATTAATTTATCAAAGGATCAACTGAATCCAAGCTTACCCACTTCCGGGAATTTGCATTTTGCAGCAAAAATGTTCAAAAAgttttctaatgaagaagtttcttcccagAATCAAGTAAAGGCATCTGTGCAACGTAAGATCCGTCAAAGCATTGCAGAGGAGTATCCAGATTTGGAGCCCATACTAGAAGATTTACTTC
CAAAGAAATCTCCTCTTATAGTTGCAAAATGCCAGAATCACATTAATCTGATTTTGGTGAATAATGTGCCACTCTTCTTCAATGTTCGAGATGGTCCTTACATGCCGACTCTGCGTCTATTACATCAATATCCAAACATAATGAAAAAGCTGCAGGTAGACAGGGGGGCAATCAAATTTGTCCTTGCTGGGGCAAACATC
ATGTGTCCTGGACTCACATCTCCTGGTGGCGCTTTGGACGATAACATTCCTGCAGATTCACCTGTGGCAGTAATGGCTGAAGGAAAGGAGAATGCACTTGCAATTGGATTTACAAAGATATCAGCAAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTGGATAACATGCATTATCTCAATGATGGCCTTTGGAAGAC
GATGCAGCTGAACTGATTGCAGCTGGGATGCAGAAGAAAAAATGCTCATGTATTTCTTGAAATCATTGTCATAGATAGACTACAATTTTTCTATATCTTGTTTTAATGTATCTTTCCAGGACTCAGGGTTTCTTCCATGCATAATTAGTTTGAAAAAAGCATTTGTGTGCATTTGCGAATGTTCCAAATTAGGATATTGA
AAACTAAAAAGCATCTTTTATATAGGTCTATGAAATGGAACTACTTGGTTGTAGCCCAAGTACTTGAATACAGGCTGTGTACTATATATTGTCCAATAATTTGACTAAACTATAGAATTGCTTACATATTATTTCAGGATTTATGTAATGTCCACTGCATTATCTGAATACGATGTATGGTCTTTATGTTATCTGGAGAT
TTTACTGCATAGAAAATTACTGTTGAGTACACTGGTATCCTCAAAGGGTATGGTTGGGTTAGCTCTGCTGATTGAAGGGGCTTTTGTCCCAAGCACCTAAAAGATTTGGCGTTAACTGCAGTTAATCTTACAAGTTCACAACATCATGGGAAGGAATAATATTGGTAAACATATTAGATTGCAGCACTTACTGGAATACC
AAATCCTGCAAACACTCTTAGCAGTGTAAATTTGAATGAATTCTCATATCCTGTTCTCTTTCTCAACAGAGAGCACAGACAAAACACACTGCAAGTTTTCTTGACATCTCTATAGAATATAAACTTGCATGAATATTCACAACCTACAATATATCTGAATATGTAGATAAAATGCAACGTATTGTCATACCTTTAGTTGT
CCATTTAGATTAAAACATCTTGTGGGGAACTAAGCAAGAGCCGGTTTGTCCTGGCTGATATCGGAT
Intron 2 GTATGGTCAA ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.22 | 169 | 27.7 | 57 |
| A2 | 27.17 | 134 | 25.3 | 50 |
| A3 | 28.05 | 159 | 44.8 | 62 |
| A4 | 19.38 | 104 | 44.2 | 25 |
| A5 | 29.2 | 80 | 24.7 | 33 |
| A6 | 25.45 | 1110 | 225.6 | 379 |
| A7 | 24.62 | 1203 | 254 | 393 |
| A8 | 24.79 | 1420 | 297 | 468 |
| A9 | 25.28 | 1182 | 200.6 | 400 |
| A10 | 26.54 | 703 | 142.8 | 254 |
>TRINITY_DN103423_c0_g1_i2 from sample A3 / Example spliced isoformCGGTAAAGTTAGGGATGCTTTGTTAAAACGCTATTTCTTCCGATTTCCATTTGGGAAAACCCCCACACAGACCAAAACGCTGCTAAGGACTACTGACAGAGTCCATTTCTGAAACCTTGATACAGACAAAAGTCGCAAAAAGACTCGATAATCCGACAGAGCTCATTTGCGTCGAAAGAAGACATTAATTTATCAAAGGA
TCAACTGAATCCAAGCTTACCCACTTCCGGGAATTTGCATTTTGCAGCAAAAATGTTCAAAAAGTTTTCTAATGAAGAAGTTTCTTCCCAGAATCAAGTAAAGGCATCTGTGCAACGTAAGATCCGTCAAAGCATTGCAGAGGAGTATCCAGATTTGGAGCCCATACTAGAAGATTTACTTCCAAAGAAATCTCCTCTTA
TAGTTGCAAAATGCCAGAATCACATTAATCTGATTTTGGTGAATAATGTGCCACTCTTCTTCAATGTTCGAGATGGTCCTTACATGCCGACTCTGCGTCTATTACATCAATATCCAAACATAATGAAAAAGCTGCAGGTAGACAGGGGGGCAATCAAATTTGTCCTTGCTGGGGCAAACATCATGTGTCCTGGACTCACA
TCTCCTGGTGGCGCTTTGGACGATAACATTCCTGCAGATTCACCTGTGGCAGTAATGGCTGAAGGAAAGGAGAATGCACTTGCAATTGGATTTACAAAGATATCAGCAAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTGGATAACATGCATTATCTCAATGATGGCCTTTGGAAGACGATGCAGCTGAACTGATT
GCAGCTGGGATGCAGAAGAAAAAATGCTCATGTATTTCTTGAAATCATTGTCATAGATAGACTACAATTTTTCTATATCTTGTTTTAATGTATCTTTCCAGGACTCAGGGTTTTTTCCATGCATAATTAGTTTGAAAAAAGCATTTGTGTGCATTTGCGAATGTTCCAAATTAGGATATTGAAAACTAAAAAGCATCTTT
TATATAGGTCTATGAAATGGAACTACTTGGTTGTAGCCCAAGTACTTGAATACAGGCTGTGTACTATATATTGTCCAATAATTTGACTAAACTATAGAATTGCTTACATATTATTTCAGGATTTATCATTTATGTAATGTCCACTGCATTATCTGAATACGATGTATGGTCTTTATGTTATCTGGAGATTTTACTGCATA
GAAAATTACTGTTGAGTACACTGGTATCCTCAAAGGGTATGGTTGGGTTAGCGCTGCTGATTGAAGGG
>TRINITY_DN103423_c0_g1_i1 from sample A3 / Example unspliced isoform:CGGTAAAGTTAGGGATGCTTTGTTAAAACGCTATTTCTTCCGATTTCCATTTGGGAAAACCCCCACACAGACCAAAACGCTGCTAAGGACTACTGACAGAGTCCATTTCTGAAACCTTGATACAGACAAAAGTCGCAAAAAGACTCGATAATCCGACAGAGCTCATTTGCGTCGAAAGAAGACATTAATTTATCAAAGGA
TCAACTGAATCCAAGCTTACCCACTTCCGGGAATTTGCATTTTGCAGCAAAAATGTTCAAAAAGTTTTCTAATGAAGAAGTTTCTTCCCAGAATCAAGTAAAGGCATCTGTGCAACGTAAGATCCGTCAAAGCATTGCAGAGGAGTATCCAGATTTGGAGCCCATACTAGAAGATTTACTTCCAAAGAAATCTCCTCTTA
TAGTTGCAAAATGCCAGAATCACATTAATCTGATTTTGGTGAATAATGTGCCACTCTTCTTCAATGTTCGAGATGGTCCTTACATGCCGACTCTGCGTCTATTACATCAATATCCAAACATAATGAAAAAGCTGCAGGTAGACAGGGGGGCAATCAAATTTGTCCTTGCTGGGGCAAACATCATGTGTCCTGGACTCACA
TCTCCTGGTGGCGCTTTGGACGATAACATTCCTGCAGATTCACCTGTGGCAGTAATGGCTGAAGGAAAGGAGAATGCACTTGCAATTGGATTTACAAAGATATCAGCAAAGGACATAAAAGCAATCAACAAAGGAATAGGTGTGGATAACATGCATTATCTCAATGATGGCCTTTGGAAGgtatggtcaaacagtcgact
ttctttccaacttgagctatggcagtattgaaggagatttctaacatttgacaaggatgaagttaaattagctttcgtcatagtagcttttgcaggatttttgcatggtcctacttctggtctcgtaagaacatactttgtagctttcaccatatatgttaatatggtatacatgtataaacttggtttagtaatatccg
ctgctattgttttggcagACGATGCAGCTGAACTGATTGCAGCTGGGATGCAGAAGAAAAAATGCTCATGTATTTCTTGAAATCATTGTCATAGATAGACTACAATTTTTCTATATCTTGTTTTAATGTATCTTTCCAGGACTCAGGGTTTTTTCCATGCATAATTAGTTTGAAAAAAGCATTTGTGTGCATTTGCGAAT
GTTCCAAATTAGGATATTGAAAACTAAAAAGCATCTTTTATATAGGTCTATGAAATGGAACTACTTGGTTGTAGCCCAAGTACTTGAATACAGGCTGTGTACTATATATTGTCCAATAATTTGACTAAACTATAGAATTGCTTACATATTATTTCAGGATTTATCATTTATGTAATGTCCACTGCATTATCTGAATACGA
TGTATGGTCTTTATGTTATCTGGAGATTTTACTGCATAGAAAATTACTGTTGAGTACACTGGTATCCTCAAAGGGTATGGTTGGGTTAGCGCTGCTGATTGAAGGG