NA ----> NA
Intron 1 GTATTTATGC ... GTTTCCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.79 | 434 | 32 | 13 |
| A2 | 5.9 | 412 | 26.5 | 27.5 |
| A3 | 5.79 | 453 | 32 | 26 |
| A4 | 5.42 | 324 | 19.5 | 19 |
| A5 | 6.38 | 248 | 15 | 19.5 |
| A6 | 5.84 | 2642 | 172.5 | 171 |
| A7 | 5.55 | 3006 | 186.5 | 180.5 |
| A8 | 5.73 | 3068 | 174.5 | 215 |
| A9 | 5.75 | 3106 | 194.5 | 199 |
| A10 | 5.1 | 2506 | 139.5 | 139 |
>TRINITY_DN44005_c0_g1_i5 from sample A8 / Example spliced isoformATATGGTTGCAATTTGATGTCCATAATCCATCAAGAAAGCCTAAGTACACCATAACCTTCAAAGCGGGCAAGTGTTTGTATATATATTATACATATTCCCTTCCACTTCCTCTTCCCGTTGTAATATTTGACTTTCTAACGGTCATATTTCCTCCCAAAACCATTTCAAAAACTCTGGTACTCCCGCTTTTCCTCCTCAC
TCTCACATGACCTGCAACCGAAAAATCTCTACTCTGAATCGTCGCTCGCCCATCGATATATCCAAACCAGTTTTCACAGCAAAATCTTCCCATTCTTTTTCGCAGCACTCGTCAGCACTTGCACTTACTGATTATCATTCGCCATATTTGAGTCCTTCAACAGAAATGGCGGTTAGAAGGCAACCTCTTGCCGTTCTCCA
GGACGAAAACGCCGAGATCAACAGAGGCAAAAGCACTGTTACTAAATCTGTCGGCCTCAAGACGCAGCAGCAAGATTTATCCGATCGGATCACTCTGTCCAACATCACGAACAAGCCGAAGCCTCGAAATTCTGGACTGGTGAGCCCGATTGCCCCTCGTAAGGTGGATAATCATGCTAAGGTGGGATTCGGTGGATCGT
TTTCTTCTGCTAAGAGTGGGCGAGCGGGGACTGTACCTCGAACTGCTCTGGGTGATATTACCAATGGAGCGGAATCCTTCAAGGCTCCAGACACTACAGTTAAACAAAAGAAGGCGCAGGGCAAGAATGTTAAAATGGGTCCTAATCCCAGATGTGAACTTACGGAGGAGGAAAAGCAGAAGGCCGAAGCTTGGGCTCGC
GAAGGAATTGAGAAGGTTCACTTTAGCGGTAAAGATACGGAGGCGTTAAAGGAAAAGATCGCAGAAGAAGAGGTCAATAGACGAGTAGCACAGGCATTGAGCTACAGAACGGAGATACCATGTTTTCTGCCTCGTGCTATTCAAAAGGATCCCCCAGTAATTTCAGATTTTTTGGAGTTAGATCCAGTGGAAGATCTCTC
TAAGAAGGGAGATTCTTCTTGCGATGATATGAAGCTGGAAGATGTGGATTATGATGAATCTTTCCTGGAGTGCCTTGAGATCTTGCAGAATGCCTCCAAAAACTGGCCTGGTATTATGGAGGATTGCGTCTATTGAGATTCAGAAGTTGTTTACCAATTATCCTTTTTGGCATCTCTTCTAAACATATGGCGGGTTCAAT
GACATAGTTGCACCGCCATATGGTTGTAACAGAAATAGGAGTTTATGAATGGCCATTGTGTAATAGCCTATAGGATTTGTGGGATGCAATTATCTTCTCTGCTATTTATAAATGCACAACAGCATACGCAATTATTTCTTTTCAAGGGATTGTTTTTGGGTAGGATGGTTATTACATAAATTTTTTGTAAAAGGTTGAAA
ATGTAACTGATACTGCTGTTGGAAGAATGCAATGCATGTATGAAAAACATATTAGCTACACTTTTAACTGATGGTGGGTTCAATGACAGTTGCATAGCCATCTGGTTGTAATAGGTTGAAAATGTAACTGACACTTCTGTTGAAAGAATACTTGTATGACAAATATATTAGCTAAACTTTTTAACTGATGACGGGTTTAG
TGGCATAGTTGCATTGCCATATAGTAGCTGTAATAGAAACTTGGGTTTGTGGATGGCCATTGTAATGGCCTATAGGATATATATAGGATGGCATGTGGATTTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGA
>TRINITY_DN44005_c0_g1_i4 from sample A8 / Example unspliced isoform:ATATGGTTGCAATTTGATGTCCATAATCCATCAAGAAAGCCTAAGTACACCATAACCTTCAAAGCGGGCAAGTGTTTGTATATATATTATACATATTCCCTTCCACTTCCTCTTCCCGTTGTAATATTTGACTTTCTAACGGTCATATTTCCTCCCAAAACCATTTCAAAAACTCTGGTACTCCCGCTTTTCCTCCTCAC
TCTCACATGACCTGCAACCGAAAAATCTCTACTCTGAATCGTCGCTCGCCCATCGATATATCCAAACCAGTTTTCACAGCAAAATCTTCCCATTCTTTTTCGCAGCACTCGTCAGCACTTGCACTTACTGATTATCATTCGCCATATTTGAGTCCTTCAACAGAAATGGCGGTTAGAAGGCAACCTCTTGCCGTTCTCCA
GGACGAAAACGCCGAGATCAACAGAGGCAAAAGCACTGTTACTAAATCTGTCGGCCTCAAGACGCAGCAGCAAGATTTATCCGATCGGATCACTCTGTCCAACATCACGAACAAGCCGAAGCCTCGAAATTCTGGACTGGTGAGCCCGATTGCCCCTCGTAAGGTGGATAATCATGCTAAGGTGGGATTCGGTGGATCGT
TTTCTTCTGCTAAGAGTGGGCGAGCGGGGACTGTACCTCGAACTGCTCTGGGTGATATTACCAATGGAGCGGAATCCTTCAAGGCTCCAGACACTACAGTTAAACAAAAGAAGGCGCAGGGCAAGAATGTTAAAATGGGTCCTAATCCCAGATGTGAACTTACGGAGGAGGAAAAGCAGAAGGCCGAAGCTTGGGCTCGC
GAAGGAATTGAGAAGGTTCACTTTAGCGGTAAAGATACGGAGGCGTTAAAGGAAAAGATCGCAGAAGAAGAGGTCAATAGACGAGTAGCACAGGCATTGAGCTACAGAACGGAGATACCATGTTTTCTGCCTCGTGCTATTCAAAAGGATCCCCCAGTAATTTCAGATTTTTTGGAGTTAGATCCAGTGGAAGATCTCTC
TAAGAAGGGAGATTCTTCTTGCGATGgtatttatgcatcacacaatttttttttatcctgtccttttttgctttatattacagttatatgatgtaagctcaaactctcgagttcgggtttttcctgtgtttccatagATATGAAGCTGGAAGATGTGGATTATGATGAATCTTTCCTGGAGTGCCTTGAGATCTTGCAGA
ATGCCTCCAAAAACTGGCCTGGTATTATGGAGGATTGCGTCTATTGAGATTCAGAAGTTGTTTACCAATTATCCTTTTTGGCATCTCTTCTAAACATATGGCGGGTTCAATGACATAGTTGCACCGCCATATGGTTGTAACAGAAATAGGAGTTTATGAATGGCCATTGTGTAATAGCCTATAGGATTTGTGGGATGCAA
TTATCTTCTCTGCTATTTATAAATGCACAACAGCATACGCAATTATTTCTTTTCAAGGGATTGTTTTTGGGTAGGATGGTTATTACATAAATTTTTTGTAAAAGGTTGAAAATGTAACTGATACTGCTGTTGGAAGAATGCAATGCATGTATGAAAAACATATTAGCTACACTTTTAACTGATGGTGGGTTCAATGACAG
TTGCATAGCCATCTGGTTGTAATAGGTTGAAAATGTAACTGACACTTCTGTTGAAAGAATACTTGTATGACAAATATATTAGCTAAACTTTTTAACTGATGACGGGTTTAGTGGCATAGTTGCATTGCCATATAGTAGCTGTAATAGAAACTTGGGTTTGTGGATGGCCATTGTAATGGCCTATAGGATATATATAGGAT
GGCATGTGGATTTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGA
Intron 2 GTAGGCATTT ... ACTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.1 | 359.7 | 5 | 10 |
| A2 | 1.28 | 316 | 2 | 6 |
| A3 | 0.71 | 363.7 | 2 | 3 |
| A4 | 0.92 | 274.7 | 1 | 4 |
| A5 | 0.57 | 180.7 | 2 | 0 |
| A6 | 0.58 | 1845 | 7 | 14 |
| A7 | 0.46 | 2169 | 2 | 17 |
| A8 | 0.8 | 1813.7 | 16 | 12 |
| A9 | 0.63 | 2117.7 | 8 | 18 |
| A10 | 0.6 | 1873 | 0 | 22 |
>TRINITY_DN44005_c0_g1_i5 from sample A8 / Example spliced isoformATATGGTTGCAATTTGATGTCCATAATCCATCAAGAAAGCCTAAGTACACCATAACCTTCAAAGCGGGCAAGTGTTTGTATATATATTATACATATTCCCTTCCACTTCCTCTTCCCGTTGTAATATTTGACTTTCTAACGGTCATATTTCCTCCCAAAACCATTTCAAAAACTCTGGTACTCCCGCTTTTCCTCCTCAC
TCTCACATGACCTGCAACCGAAAAATCTCTACTCTGAATCGTCGCTCGCCCATCGATATATCCAAACCAGTTTTCACAGCAAAATCTTCCCATTCTTTTTCGCAGCACTCGTCAGCACTTGCACTTACTGATTATCATTCGCCATATTTGAGTCCTTCAACAGAAATGGCGGTTAGAAGGCAACCTCTTGCCGTTCTCCA
GGACGAAAACGCCGAGATCAACAGAGGCAAAAGCACTGTTACTAAATCTGTCGGCCTCAAGACGCAGCAGCAAGATTTATCCGATCGGATCACTCTGTCCAACATCACGAACAAGCCGAAGCCTCGAAATTCTGGACTGGTGAGCCCGATTGCCCCTCGTAAGGTGGATAATCATGCTAAGGTGGGATTCGGTGGATCGT
TTTCTTCTGCTAAGAGTGGGCGAGCGGGGACTGTACCTCGAACTGCTCTGGGTGATATTACCAATGGAGCGGAATCCTTCAAGGCTCCAGACACTACAGTTAAACAAAAGAAGGCGCAGGGCAAGAATGTTAAAATGGGTCCTAATCCCAGATGTGAACTTACGGAGGAGGAAAAGCAGAAGGCCGAAGCTTGGGCTCGC
GAAGGAATTGAGAAGGTTCACTTTAGCGGTAAAGATACGGAGGCGTTAAAGGAAAAGATCGCAGAAGAAGAGGTCAATAGACGAGTAGCACAGGCATTGAGCTACAGAACGGAGATACCATGTTTTCTGCCTCGTGCTATTCAAAAGGATCCCCCAGTAATTTCAGATTTTTTGGAGTTAGATCCAGTGGAAGATCTCTC
TAAGAAGGGAGATTCTTCTTGCGATGATATGAAGCTGGAAGATGTGGATTATGATGAATCTTTCCTGGAGTGCCTTGAGATCTTGCAGAATGCCTCCAAAAACTGGCCTGGTATTATGGAGGATTGCGTCTATTGAGATTCAGAAGTTGTTTACCAATTATCCTTTTTGGCATCTCTTCTAAACATATGGCGGGTTCAAT
GACATAGTTGCACCGCCATATGGTTGTAACAGAAATAGGAGTTTATGAATGGCCATTGTGTAATAGCCTATAGGATTTGTGGGATGCAATTATCTTCTCTGCTATTTATAAATGCACAACAGCATACGCAATTATTTCTTTTCAAGGGATTGTTTTTGGGTAGGATGGTTATTACATAAATTTTTTGTAAAAGGTTGAAA
ATGTAACTGATACTGCTGTTGGAAGAATGCAATGCATGTATGAAAAACATATTAGCTACACTTTTAACTGATGGTGGGTTCAATGACAGTTGCATAGCCATCTGGTTGTAATAGGTTGAAAATGTAACTGACACTTCTGTTGAAAGAATACTTGTATGACAAATATATTAGCTAAACTTTTTAACTGATGACGGGTTTAG
TGGCATAGTTGCATTGCCATATAGTAGCTGTAATAGAAACTTGGGTTTGTGGATGGCCATTGTAATGGCCTATAGGATATATATAGGATGGCATGTGGATTTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGAGTGCATGTGGAATTTTTTTTTTAAGGGATTAATGA
>TRINITY_DN44005_c0_g1_i1 from sample A8 / Example unspliced isoform:TGCCAACTGTAGTCGAAAGTATCAAGCAATTAATTGTAAAGCAGTATTCCATTAAGAAAAAATGGAATACTCTAACCTTAGCAAGACAAAATAGCGGTCACTTACTAACCTTAGCAAGACAAAATAGCAGTCACTTACTAACCTTTTTTCCATCATTGCTAGGCAACCCTGAATCTGTAGATTCTGCCTATAACATCGGG
GGGTCCTAAATTTTATCGGTTGTTTGGATCATCTTGGTTGTTTGGGAGAGATAGCTATTGCTTATGAGAATGCCCAAAAGATGGATGGAGATTAACCCATGTATAATACATCTTTGAGCATACATCTGCCCCCTAGATGAGGTACAGTGCTTTTAGATGATTACAAATGAATGTTATAATCTTTTTGTCTGCATCTTCTT
GATGATGCTACAGTAGGAACTTGGTTCTTTACTCATATAACAGGAACACCTACACAATTCTTTGATATTCAAGTAAAGATCCTGTCTATTTGAGATGGGGTAGGTAACGGTGCTTTAACTTTTAATTGATATGAATCTGTCTATTTTTTGAGAGAAATGATACGCTAGAAATCTGTCTGTCTAGTAAAGATATTTGATAC
TCTAGAAATCTGCTTGTCTGTTTACTATGTTATTTTCACAAAAGTCTGACAAGCTTTCTTCATTTTCTAATAAAGCTTAACAATCTTATGCTCTTTCAGATAAATTTGTTTATATTTAATGGCTTTTTGGTTGAGAAATTGAGTGTGCTTTACTAGTTTTTAACAATATTATGCCCTTTCAGATAAATTTGTTTATGAGC
TTTAATGGCTGTTTGGTTGAAAATATTGAGTGTGCTTTTTCACTGCACAATGTGGTTTGTCTTCCTTATGAGCTATTGGGCTTTCATCACCTTAACTGGACCATGATTGAGGTGCTGTTTGTTTTCTTCAGAGGTCAACAATATTAGGCTCTTTTCGAATAAATTTGTTTATAAGCCTTAATATCATGCTCTTTCAGATA
AATTTGTTTATATTTAATGGCTTTTTGGTTGAGAAATTGAGTGTGCTTTACTAGTTTTTAACAATATTATGCCCTTTCAGATAAATTTGTTTATGAGCTTTAATGGCTCTTTGGTTGAAAATATTGAGTGTGCTTTACTAGTTTCACTGCACAGTGTGGTTTGTCTTCCTTGTAAGCCATTGGGCTTTCATCACCTTAGC
TGGACCATGATCGAGGTTCTGTTTGTTTTCTTCAGAGGTCAATAGACGAGTAGCACAGGCATTGAGCTACAGAACGGAGATACCATGTTTTCTGCCTCGTGCTATTCAAAAGgtaggcattttgcaggatctgttcttctgttacctggaatatcaaatagccgataaatcatatagcaaattgaaatgaacaaggccag
cctaatgcaaataataatgaacaaatttgggctggttgttgaaatgtacttttgcagGATCCCCCAGTAATTTCAGATTTTTTGGAGTTAGATCCAGTGGAAGATCTCTCTAAGAAGGGAGATTCTTCTTGCGATGGTATTTATGCATCACACAATTTTTTTTTATCCTGTCCTTTTTTGCTTTATATTACAGTTATATG
ATGTAAGCTCAAACTCTCGAGTTCGGGTTTTTCCTGTGTTTCCATAGATATGAAGCTGGAAGATGTGGATTATGATGAATCTTTCCTGGAGTGCCTTGAGATCTTGCAGAATGCCTCCAAAAACTGGCCTG
Intron 3 GTATTTCAGC ... GTTTTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.38 | 524 | 2 | 0 |
| A2 | 0 | 437 | 0 | 0 |
| A3 | 0.39 | 488 | 2 | 0 |
| A4 | 0.29 | 317.5 | 1 | 0 |
| A5 | 0.74 | 258 | 2 | 0 |
| A6 | 0.18 | 2861 | 5.5 | 1 |
| A7 | 0.3 | 3194.5 | 10 | 2 |
| A8 | 0.5 | 3610 | 18.5 | 1 |
| A9 | 0.18 | 3581 | 6.5 | 0 |
| A10 | 0.54 | 2693.5 | 15 | 5 |
>TRINITY_DN43516_c0_g4_i2 from sample A7 / Example spliced isoformCGCTGCTAACGATGAATCAGAGCCCACCGGATTCTTTGGCACGAGTGACTAAGGCGCTGACCATTGAATTACTTTTCCAATTCATAACCGTTGAACTTTTAGTTTTCTCTTTTCTGTTTAAATTTAAAAATCATCCACCCTCTTTTGCTTCGAATCTGTGTGTTTAACGGTTATATTTCCTCCAAAACCCCAGCCCCTCT
TGCTTATCCTTCTCACTCTTGCAACCGGAAAATCAGTCTCAAACATCACTCGGCCATCGATAGCTCAATATCATCAATCGCCATATTTCAGCCCTCCACCAGAAATGGCTGTCAGAACGCAACCTCTTGATGTCCTCCAGAAGGAAAACACCAAGATCAAAAGCGGCAAAAGCACTATCCCTAAATTTGGCGAACTCAAG
GCGCAGCAGCCTGATTCATCCGATCGGAAAGCTCTGTCCACCATCACGAATAAGTTAAAGCCTCCAAAGCCTGATCTGTCAACCTCTATTTACCCTCACAAGGCAGAGAATAATAATAAGGGTAAAGTCTGTGGAACATTTTCTTGTGCTAAGAATGGGCGAGCGAGAATTGTACCTCGAGCTGTTCTGGGTGATATTAC
GAATGGGGTGGTACCTCGAGCTGCTCTGGGTGATATTACGAATGGGGTGGAATCGTTTAAGGCTCCAAACATTGCGGCTAAACAGAAGAAGGCTCAGGGCAAGAATGTGAAAATGGGTCCTAATCCAAGATACGAAGTTACGGAGGAGGAAAAACAGAAGGCCTACGCTTGGGCTCGTGAAGGAACCGAGAGGGTTCAGT
TTAGCGGTAAAGACATGGAGGCTTTGAATGATATGATCGCAGAAGAAGATGTCAACAGACGAGTAGCACAAGCAGTAAGCTGCCGAACAGAGATACCATGCTTTCTGCCTCGTGCTTTTCAGAAGGATCCCCCTGAAATTACAGATGTTTTAAAGTCAGTACCACTGGAAGATCTCTGTAAGAAGGAAGATTCTTCTTGC
GATGATATGAAGCTGGACGATGTGGATTATGATGAATCTTTCCGGGAGTGCCTTGAAATTTTGCAGAATGCCTCCAAAAACTGGCCTGATACCATGGAGGATTGTGTGTAGTGAGATGCAGAAGTTGTTACCAATTATCCTTTTTGGGCATCTTTTCTAGAGATGATGGTGGGTTCAATGGCACAGTTGCACCGCCATAG
GGTTGTAATGGAAACAGGGGCTTATGAATGGCCATTTGTAATATAGCCTTATAGGTGCAGTTATCTTGTCTGCATTTTTATAAATACATAACAGCATATGAAGATATTGTTTTTGGATGGTTACTACATAATTTACTGTGAAAAGCTGATAATGCTGCTGAAAGAATGTATGCATGAGAAAATATTTTAGTTAAAACTTT
CATTTGTTAATTTGTTTTAAGCTTTGAGTTCGATTACTGAAGTCTGTTTATTTATGAAATTTAAAGGTTTATAAATGATATTATTGTCTTTTATTTGGATATGGATTAATGAAGATAGG
>TRINITY_DN43516_c0_g4_i1 from sample A7 / Example unspliced isoform:GCATCTCTTCCCTTTTCACCGCCTTCAATGAGAATGTAAATAAACCATTTGATGGTTCTTGCAGGCAAAAGCACTATCCCTAAATTTGGCGAACTCAAGGCGCAGCAGCCTGATTCATCCGATCGGAAAGCTCTGTCCACCATCACGAATAAGTTAAAGCCTCCAAAGCCTGATCTGTCAACCTCTATTTACCCTCACAA
GGCAGAGAATAATAATAAGGGTAAAGTCTGTGGAACATTTTCTTGTGCTAAGAATGGGCGAGCGAGAATTGTACCTCGAGCTGTTCTGGGTGATATTACGAATGGGGTGGTACCTCGAGCTGCTCTGGGTGATATTACGAATGGGGTGGAATCGTTTAAGGCTCCAAACATTGCGGCTAAACAGAAGAAGGCTCAGGGCA
AGAATGTGAAAATGGGTCCTAATCCAAGATACGAAGTTACGGAGGAGGAAAAACAGAAGGCCTACGCTTGGGCTCGTGAAGGAACCGAGAGGGTTCAGTTTAGCGGTAAAGACATGGAGGCTTTGAATGATATGATCGCAGAAGAAGATGTCAACAGACGAGTAGCACAAGCAGTAAGCTGCCGAACAGAGATACCATGC
TTTCTGCCTCGTGCTTTTCAGAAGTTTGGTCTGGTTGTTGAACTGTACTGTCGCAGGATCCCCCTGAAATTACAGATGTTTTAAAGTCAGTACCACTGGAAGATCTCTGTAAGAAGGAAGATTCTTCTTGCGATGgtatttcagcctctgtttttttggctttaccttgctagcaagagcaatagttccattttataaac
tggactttcaagctcatgtgtttttcctgtgttttcatagATATGAAGCTGGACGATGT