sp|Q9M364|ATX3_ARATH ----> Histone-lysine N-methyltransferase ATX3

Intron 1 GTACTAAATG ... TGAGTAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	18.52	66	3	15
A2	8.89	41	5	4
A3	15	51	3	9
A4	27.87	44	2	17
A5	22.58	24	2	7
A6	0	33	0	0
A7	15.07	62	7	11
A8	13.75	69	5	11
A9	10.29	61	0	7
A10	7.27	51	0	4

>TRINITY_DN48063_c0_g1_i17 from sample A7 / Example spliced isoform

TGGTGAGATATGTGCTACCCATGAAGATTCCCTCACCAAACATATGGAAGAAGGCCCAACATGTCATTGTTAACTCCAATGTCCAATGAATTAATGACTGTTTTGATAAAATCTACTCTAGCTGTAAACAGCACCACTAGCTCATCTTTGACAGCTGACATTTCTACTAGTTCTTATCTTTTTTTTCTTGCAAGGCTATT
AATCTCAGGATTCAAAAAAGGTAATAGCTAGCCAATGAATCCTTATGCTTTATTATATCACTGCAGAACCATATGAACCAGATAAAGTGAACTGGACAACTGAAAGGTGTGCAGTGTCCACTATGCGGTTGGGTGTAAGACTGGGATTACAACAGAATTATTATTTGCAATAGATGCCAAATTGCTGTTTATCAAGAATG
CTATGGTGTTAATGGAGAAGTGCAGGACCTTGCTTCATGGGTTTGCAGAGCATGTGAGACACTAGAAATTAGGCGAGAATGCTTCCTTTGCCCTGTGATGGGCGGTGCGCTGAAGCCTACCACTACAGGTCAATGTTGGGTGCATGTTACCTGTGCTTGGTTTGCATCTGTAGTGTCATTTATGAGTGTTAAAACTATGG
AACCTGCAGATGGCATATTGAAAATTGATGCAAGGTCTTTTCAAAAGGTTGGTTAATATACTGATCATCCCAATGTAAACAACAGAGCCTTCAACTTGTGCATTATAGTAAGAAAATCATTTTTCTTGTTTCTTTCTGCCTAGCATCCTGTATGGCTAATTATTCTAAATTCCTAGGTAGCATAAACAGCAATGATAATT
AAGGTTACTTCAGATTTTGAGCAGAATGTTTTCT

>TRINITY_DN48063_c0_g1_i5 from sample A7 / Example unspliced isoform:

TAGAGAGGGAGCTACTAAAAGATGAGGTGATCCTCCAATTCAGTCTCCTGTAGGTGGCGAAGTTGACAAAAGTTGACAGATCCTATAGCAAATGGTGAATATTTAATAATGTGAAACTATATAAAAATATCTTAATTTCATTTACATAAAGTAGTGCCTATCTAAGATTCTAATCTCACCATCTAATTTGATATATTTAT
TTTTCACTTACATTGAGACATCATTATTTGTGAAGTTTGACCAAAAGTTCATTGAGACATCATTATATGTGAAGTTTGATGAAAAGTTCTCAATTTAGTTTCTTTTCAGCTTTTTAAGTTTTTAATACTCTATAGAAGATTGTTCCTGTGATTGAAGTAATGGCACTTTCTCTTTTTATCTATGTGGTCTCCATGCATGA
TTTATTTTTCTTTGGTACATGCCAGAATCCTTTGTGAATGTGGAAAAGGTACAAGGATGAGTATTTCACGATGGGAAAAACATACAGGATCTCGAAAGAAGAAGTGGAAGCAAAGTGTCAAAGTGAAGGATTTGAATCTCCATCTCATAGATTGGATAAATCAGGCATATGAGGCTGGGGTTTGTGTCCTTGGATTTTAT
AGCCATGAAAAGCAAACACGTGTGAAATTTCAGGAGCGAGAATTAGTCAAATGCTTGCTATGTAGATTTTGACAAAAACCCCAGCTTTCCATGGCCAGCCTTATTAAGAACCATATGAACCAGATAAAGTGAACTGGACAACTGAAAGGTGTGCAGTGTCCACTATGCGGTTGGGTGTAAGACTGGGATTACAACAGAAT
TATTATTTGCAATAGgtactaaatgcgatacattcattcaacttcatgctgttggatatggcaattcattttaaattctgttagttaaatgttgtatgagcagaaataagagaatatacttgtatcaaatccagaagttctgagatttgatctatgtaatttgtttatatgtattatatgtagagattatagcacaaaag
agcttggacctatacattagtttctaacagataagtttgagtaacagATGCCAAATTGCTGTTTATCAAGAATGCTATGGTGTTAATGGAGAAGTGCAGGACCTTGCTTCATGGGTTTGCAGAGCATGTGAGACACTAGAAATTAGGCGAGAATGCTTCCTTTGCCCTGTGATGGGCGGTGCGCTGAAGCCTACCACTAC
AGGTCAATGTTGGGTGCATGTTACCTGTGCTTGGTTTGCATCTGTAGTGTCATTTATGAGTGTTAAAACTATGGAACCTGCAGATGGCATATTGAAAATTGATGCAAGGTCTTTTCAAAAGGCATGCAGGTCTGCATAATTTGTAAGCAGATGCATGGATCTTGCATCCAATGTTGGAAATGCCACAAATCTTATCTTGC
AATGTGTGCATCAAAAGCAG

Intron 2 GTTATTCGGC ... CGGGGCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	56.86	11	9	20
A2	47.06	9	3	13
A3	42.86	20	7	23
A4	40.74	8	2	9
A5	40	6	3	5
A6	53.85	3	2	5
A7	42.86	6	2	7
A8	100	0	1	2
A9	53.33	7	7	9
A10	56.52	10	9	17

>TRINITY_DN103085_c8_g1_i1 from sample A5 / Example spliced isoform

CCACTCGCACCGAGATCATTCGGAGAAATCATGGATATAAATCTGTGCGTCGATTGACACACAAGCATCGACTGTTCGTCAACTGCCGTCCGCGCCTACTTCACCCACGAAATCTTGTGCACCAAGGATATCTAATAAATGGGTTGTTCTGGCTTTGGGTCGTGGCCTTTTTATCTATATGCCCAGAAGAACGGGGGCTT
GGCATACCAGCGAATTAGCATGCAAATTGATGAAGGATTGCGTCGTCAGAGGCTAAGTGCTACGTGTATTGTCTGCTGCGCCTTGATTTTGCGATTCAGAGGACGGTTCTGGAACTAAATACGGCCTAGGTTCTTTAGTATTTTCACATTCTATTATTTCCCCATTTGAAGAGCCTGGAAGCTGCGGTTAGCTTCGGATT
TGAAGGTCAAATTTGCTTTTGAAATGGAAAATTTGAGGCGTTTGCAGAGCGAAAATTCAGGTG

>TRINITY_DN103085_c8_g1_i2 from sample A5 / Example unspliced isoform:

CCACTCGCACCGAGATCATTCGGAGAAATCATGGATATAAATCTGTGCGTCGATTGACACACAAGCATCGACTGTTCGTCAACTGCCGTCCGCGCCTACTTCACCCACGAAATCTTGTGCACCAAGGATATCTAATAAATGGGTTGTTCTGGCTTTGGGTCGTGGCCTTTTTATCTATATGCCCgttattcggccgtgtt
aacattattcgagaccggggcgcagAGAAGAACGGGGGCTTGGCATACCAGCGAATTAGCATGCAAATTGATGAAGGATTGCGTCGTCAGAGGCTAAGTGCTACGTGTATTGTCTGCTGCGCCTTGATTTTGCGATTCAGAGGACGGTTCTGGAACTAAATACGGCCTAGGTTCTTTAGTATTTTCACATTCTATTATTT
CCCCATTTGAAGAGCCTGGAAGCTGCGGTTAGCTTCGGATTTGAAGGTCAAATTTGCTTTTGAAATGGAAAATTTGAGGCGTTTGCAGAGCGAAAATTCAGGTGCGTTTGAAGGTAATTATTCGATCTTCTGCATTTTATGTGTTAGTTTTGTTGGATTGCGGGCTTTTGCTTTTGGTTATTAACGCTTATTACAGAGAC
ATTGAATCAATATCTA