sp|F4HZQ7|WTR5_ARATH ----> WAT1-related protein At1g21890
Intron 1 GTTTGGTATC ... TTGGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.2 | 22 | 3 | 2 |
| A2 | 33.33 | 13 | 6 | 7 |
| A3 | 25.58 | 16 | 6 | 5 |
| A4 | 15.38 | 11 | 3 | 1 |
| A5 | 7.69 | 6 | 0 | 1 |
| A6 | 18.6 | 105 | 25 | 23 |
| A7 | 17.87 | 131 | 26 | 31 |
| A8 | 20.15 | 105 | 25 | 28 |
| A9 | 18.56 | 79 | 17 | 19 |
| A10 | 17.95 | 64 | 10 | 18 |
>TRINITY_DN38071_c0_g1_i7 from sample A9 / Example spliced isoformAAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAATCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAGGCCTGAGACATGTTTTTCAGAATATACAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGG
TTTCTGATCCAAGTTATAGAACCCGAGTTGTGACTGTTATTTGATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACCATTTTGTGTTTGTT
GTTTACAGCAATGCTCTGGCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCT
AATCCCTGCTTTCACCTTCATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTC
AGAACACAATTGCAGTCAAAGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCT
GCTTGGAGTCTAAAATGGGACATTGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAG
TGTGGTGGGAGCGTTTTTCATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAGATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGT
TGATCCATCATCATGCCACAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACATGTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACT
GTATGAATCAAATTTGTAATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCTACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAACAAGCATGTAGTCATTTTTATCTACTATCACTTTAAGAAGAGTTACCT
GCTTGTTTACATGAATGCTATCCCTTTTCTGAGGATTTTTCAAATGTAATATGCTGCTCAATCCCATCTTGCCTTCAATCATATTACCCAAGACAATTATTTTCTAATATCTATAGAGATAAAGGC
>TRINITY_DN38071_c0_g1_i2 from sample A9 / Example unspliced isoform:AAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGGTTTCTGATCCAAGTTATAGAACCCGAGTTGTGACTGTTATTTG
ATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACCATTTTGTGTTTGTTGTTTACAGCAATGCTCTGGCTGCTGCCCTGCTGATCCCAATTG
CATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTTCATATTGTCCATTGTTTTCAGGCTG
GAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCAAAGATTGGATTATAGGATCCCTTTT
CCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGGACATTGAGTTTATAAGTATTTCAT
ATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGgtttggtatctaacattctcaagaattagccatcatttattat
ttgacaagcagatagatgtgaggatacgagggaaaaagacaacagctagttgcctatcttgaccttattttgacatcatctattgtcttgttggattcagTGTGGTGGGAGCGTTTTTCATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAGATCCT
ACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGTTGATCCATCATCATGCCACAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACATGTTGG
CCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACTGTATGAATCAAATTTGTAATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCTACTCT
CATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAACAAGCATGTAGTCATTTTTATCTACTATCACTTTAAGAAGAGTTACCTGCTTGTTTACATGAATGCTATCCCTTTTCTGAGGATTTTTCAAATGTAATATGCTGCTCAATCCCATCTTGCCTTCAATCATATTACCCAAGACAATTAT
TTTCTAATATCTATAGAGATAAAGGC
Intron 2 GTTTCTGATC ... TTGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.19 | 4 | 6 | 17 |
| A2 | 100 | 0 | 1 | 10 |
| A3 | 85.37 | 3 | 14 | 21 |
| A4 | 100 | 0 | 9 | 22 |
| A5 | 82.61 | 2 | 7 | 12 |
| A6 | 70.09 | 16 | 16 | 59 |
| A7 | 84.35 | 9 | 32 | 65 |
| A8 | 82.42 | 8 | 28 | 47 |
| A9 | 77.39 | 13 | 26 | 63 |
| A10 | 88.24 | 4 | 29 | 31 |
>TRINITY_DN114417_c0_g1_i3 from sample A1 / Example spliced isoformAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGCAATGCTCTGGCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGG
CAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTTCATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCC
TCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCAAAGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCA
ACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGGACATTGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAA
TCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGTGTGGTGGGAGCGTTTTTCATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAG
ATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGTTGATCCATCATCATGCCACAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACAT
GTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACTGTATGAATCAAATTTGTAATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCT
ACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAAA
>TRINITY_DN114417_c0_g1_i5 from sample A1 / Example unspliced isoform:AAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGgtttctgatccaagttatagaacccgagttgtgactgttatttgatcaaagatagagggaaagagagagaactgaaaaatgggttcc
atgtattcattcctgccatttgcagtcatgatttcactggagtgctttgatgtgggattgaccacactgagcaaagctgctttctccaaaggaatgaaccattttgtgtttgttgtttacagCAATGCTCTGGCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTC
AATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTTCATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTT
TGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCAAAGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATG
CAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGGACATTGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAAC
TTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGTGTGGTGGGAGCGTTTTTCATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTT
CAAGCACAGATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGTTGATCCATCATCATGCCACAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTC
TCAATACATGTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACTGTATGAATCAAATTTGTAATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATA
TCTTCTGCTACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAAA
Intron 3 GTATTGACCT ... ATGAGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.74 | 9 | 1 | 4 |
| A2 | 23.08 | 15 | 9 | 0 |
| A3 | 20 | 14 | 6 | 1 |
| A4 | 10.34 | 13 | 1 | 2 |
| A5 | 30.43 | 8 | 5 | 2 |
| A6 | 18.37 | 60 | 19 | 8 |
| A7 | 19.63 | 43 | 12 | 9 |
| A8 | 20.35 | 45 | 15 | 8 |
| A9 | 21.65 | 38 | 15 | 6 |
| A10 | 21.99 | 55 | 20 | 11 |
>TRINITY_DN40474_c0_g1_i3 from sample A7 / Example spliced isoformCTGGGAGTACAATATAATTTTTATAAAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGGTTTCTGATCCAAGTTATA
GAACCCGAGTTGTGACTGTTATTTGATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACCATTTTGTGTTTGTTGTTTACAGCAATGCTCTG
GCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTT
CATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCA
AAGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGG
GACATTGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGTGTGGTGGGAGCGTTTTT
CATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAGATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGTTGATCCATCATCATGCCA
CAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACATGTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACTGTATGAATCAAATTTGTA
ATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCTACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAACAAGCATGTAGTCATTTTTATCTACTATCACTTTAAGAAGAGTTACCTGCTTGTTTACATGAATGC
TATCCCTTTTCTGAGGATTTTTCAAATGTAATATGCTGCTCAATCCCATCTTGCCTTCAATCATATTACCCAAGACAATTATTTTCTAATATCTATAGAGATAAAGGTTCAC
>TRINITY_DN40474_c0_g1_i1 from sample A7 / Example unspliced isoform:CTGGGAGTACAATATAATTTTTATAAAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGGTTTCTGATCCAAGTTATA
GAACCCGAGTTGTGACTGTTATTTGATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACCATTTTGTGTTTGTTGTTTACAGCAATGCTCTG
GCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTT
CATATTGTCCATTGTTTTCAGgtattgacctaatccaaatttaacatttgtttttcagatatggattcatattccttagtccacaatctaggaggttttcagtttccatggatttaaaatctctacctagattaatttgattactgctacttacatttgtctctattcagcattatgcctagcttttgtataatttgtgc
cataatatgagttcagGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCAAAGAT
TGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGGACAT
TGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGTGTGGTGGGAGCGTTTTTCATTG
TATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAGATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACATCAATGACAGCAGTTGATCCATCATCATGCCACAAGT
GTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACATGTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTTTGTGCTATCAGACTGTATGAATCAAATTTGTAATTAT
TGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCTACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAACAAGCATGTAGTCATTTTTATCTACTATCACTTTAAGAAGAGTTACCTGCTTGTTTACATGAATGCTATCC
CTTTTCTGAGGATTTTTCAAATGTAATATGCTGCTCAATCCCATCTTGCCTTCAATCATATTACCCAAGACAATTATTTTCTAATATCTATAGAGATAAAGGTTCAC
Intron 4 GTATGGATCA ... TTCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 12 | 4 | 4 |
| A2 | 42.86 | 12 | 2.7 | 9 |
| A3 | 44.44 | 10 | 3.7 | 8 |
| A4 | 34.34 | 14 | 2.7 | 7.3 |
| A5 | 26.67 | 11 | 4 | 4 |
| A6 | 28.26 | 66 | 7.3 | 26 |
| A7 | 18.48 | 75 | 18.7 | 17 |
| A8 | 28.57 | 75 | 16.7 | 30 |
| A9 | 33.04 | 77 | 13.7 | 38 |
| A10 | 28.36 | 48 | 7.3 | 19 |
>TRINITY_DN39967_c0_g1_i5 from sample A8 / Example spliced isoformTGGGAGTACAATATAATTTTTATAAAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAGGCCTGAGACATGTTTTTCAGAATATACAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCT
ACTGAGAATGAAGGTTTCTGATCCAAGTTATAGAACCCGAGTTGTGACTGTTATTTGATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACC
ATTTTGTGTTTGTTGTTTACAGCAATGCTCTGGCTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACT
GCAATGGGGAACCTAATCCCTGCTTTCACCTTCATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAG
TCACGATACTGCTCAGAACACAATTGCAGTCAAAGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTG
TGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGGACATTGAGTTTATAAGTATTTCATATTCGGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTTGTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAA
CTACATGTTGGAAGTGTGGTGGGAGCGTTTTTCATTGTATTGGGTTTCTATGCTGTGATCTGGGGCCAATCAAAGGATGGTGATAGTATCGATCAACTTTCAAGCACAGATCCTACAAAGCGGCAGTGGGAGCCTATAGATAGTGACGACATTGAAACTAAACAGCCACTGTTTGCAGACAAAGTCACTTAGGGCTTACA
TCAATGACAGCAGTTGATCCATCATCATGCCACAAGTGTGTGTAAAGAGAGTAAAGTTCTTTCATGGAAGATTCCATGTGAGATTAAAGCTGTGCACTTCTCAATACATGTTGGCCCGTGTTCATCAAAACCTATATGGCCATTGAAGCTCATCTGCCAAAACCTATATTGCCATTGAAGCTCATCTGCCCTCTTGCCTT
TGTGCTATCAGACTGTATGAATCAAATTTGTAATTATTGCTAACATAACCTCATCAGTTGTAAGAAATATTCAATTTCATCATTTTTGTAGTAGTTAATATCTTCTGCTACTCTCATCGGGGAGATTTTTGACGAGCCCTCTGTTATTTTATGAAATTGATACAAACAAGCATGTAGTCATTTTTATCTACTATCACTTT
AAGAAGAGTTACCTGCTTGTTTACATGAATGCTATCCCTTTTCTGAGGATTTTTCAAATGTAATATGCTGCTCAATCCCATCTTGCCTTCAATCATATTACCCAAGACAATTATTTTCTAATATCTATAGAGATAAAGGTTCACAAT
>TRINITY_DN39967_c0_g1_i3 from sample A8 / Example unspliced isoform:TGGGAGTACAATATAATTTTTATAAAACGATGCGCTAGGAATCTTATTTTTAACATAAAAATAATAAAAACTGTACAATTTGTCACGTTCCCATTAAAGGAGACATGTTTTTCAGAATATGCAGTCAAGCCTGAATGTTTGTTGGGCGTGTTCTAAATTAACTGCCTACTGAGAATGAAGGTTTCTGATCCAAGTTATAG
AACCCGAGTTGTGACTGTTATTTGATCAAAGATAGAGGGAAAGAGAGAGAACTGAAAAATGGGTTCCATGTATTCATTCCTGCCATTTGCAGTCATGATTTCACTGGAGTGCTTTGATGTGGGATTGACCACACTGAGCAAAGCTGCTTTCTCCAAAGGAATGAACCATTTTGTGTTTGTTGTTTACAGCAATGCTCTGG
CTGCTGCCCTGCTGATCCCAATTGCATTTTTCGTTGACAGGAGGAAAAGGCCTCCTCTGACATGGTCAATGCTGGGCAGATTTTTTGTGCTGGCGATTTGTGGTGTCACTGTCATGCAGAATTGTGTCTTCACAGGCGTAAACTACACTTCCCCAGTTCTTGCTACTGCAATGGGGAACCTAATCCCTGCTTTCACCTTC
ATATTGTCCATTGTTTTCAGGCTGGAGAAAGTAAACATAAGAAATTCTGGTAACCTGGCAAAGGTTTTGGGTACCCTCATTTCTGTATGTGGAGCGATGACTGTGACTCTGTACAAGGGTCCTGTCATAAGAAACTTCTGGTTTCTAAACGATGATGTAGACAACAGTCACGATACTGCTCAGAACACAATTGCAGTCAA
AGATTGGATTATAGGATCCCTTTTCCTTGCAGGGGCCTCCATCTCTTGGTCCACTTGGAACATAATGCAGGTGGCAACTTTGAAGAAATATCCAGCTGAACTGTCCATCACTGCTTTCACCACCTTTTTTGCAACTATACAATCAGCTCTTTTAACATCGCTTACTGTGCGTGAGTCAGCTGCTTGGAGTCTAAAATGGG
ACATTGAGTTTATAAGTATTTCATATTCGgtatggatcacagctcagtgccagtctcctcattgtgtgcctgcagctttctcttgaaacatgtgtccagtggctctgaatatggtgattctttccttgcagGCAATTATTGGTACAGGTCTGACATATACAATGCAAACTTGGTGTAATCGCAAGAAAGGACCTCTATTT
GTGGCAATGTTTAAGCCCGTTGGGATAGTAATCGCAGCCATAGCAGCAGCTATTTTCCTTGGTGACAAACTACATGTTGGAAGGTTTGGTATCTAACATTCTCAAGAATTAGCCATCATTTATTATTTGACAAGCAGATAGATGTGAGGATACGAGGGAAAAAGACAACAGC