NA ----> NA
Intron 1 GTCCAGTTGA ... AATCGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.12 | 44.6 | 113 | 126 |
| A2 | 73.82 | 32.4 | 77.9 | 104 |
| A3 | 73.34 | 37.4 | 99 | 101 |
| A4 | 73.69 | 45.3 | 117 | 130 |
| A5 | 67.85 | 24.9 | 46.9 | 57 |
| A6 | 70.99 | 36 | 75 | 99 |
| A7 | 69.38 | 96.5 | 206.9 | 221 |
| A8 | 75.85 | 22 | 66 | 65 |
| A9 | 70.92 | 62 | 141 | 152 |
| A10 | 73.77 | 91.7 | 254.9 | 242 |
>TRINITY_DN124247_c0_g1_i4 from sample A1 / Example spliced isoformACATACATGGAGGAACATTTCAGATTCAGATGAAATGAAATCAGGGTTTAAGAAGGTTTCCCGGTCTCGTTTCGAGAAATGGGCATCCTCTCTGCATGGTTTGCACGGTAGCCATGGCAGTAGAATACCTGGAAAGTTCAGTTCTAGCCCTTATCTGCAGCTTCTGAATCTATATCTGCACAATTTTGTTACAATATCTG
ATTTGTGTGCTTCTAGTGTGTCTGTACATTCTTTTGAGGAGAACCCTTCGATATTTTCTCGCGCAGAGTTTGTTGTTCATACCTTTGTACAGTTTTGGTTGGTGAATGACGATTTTTCGCCCCTGCCTTTACGACTTTGCCAGTCTTTTGGTATCTTGTTACCTGTTAGTAATCAGTATTATAGGTATGCGCTCCCTAGT
GTAGAACTTACCGAGGCTGTGAGAATACTGGTGAATTATGTAAACGGTACTTTGTTATCCCCTCAAGAAGAGTCGAGTTCTAGATGGAGGGTTGCATCACAAATGGATACTTTGAGATTGAGCTCATTTTCTCTGCCGCTGAGCAGTCTTGTTCTGCCTGCTACGTGGCCCCTTCTGTTACAGAGGCCTTTGTACAGGTT
TATATTGCGAGCTCTCAGTTATTGGCCAATCGGTACTTCTCTGAAGAAGGCTACATATATTATTGATTTATGGTTGGATTATTTACAGCCTTGGAAAACTGGTGCAGAAGGCGAAATCATGCCTGCTCTCGAAGAGGATCATTATTCCGAGGCCGAGAATAAGATGCTGAGGGATCGGGATCAACGATTATCTCCACTTT
CAGGGAGTTCGCTTTCAAAGACAAAGATTGCTATGGACTCTGTGGGGTCGGTAATAAAAAGAAGCACAAAAGAAAGTTGTTATGGATATAATGACCAGTGGCAAAATTATGTTATGGCGAATTATCCTTTCTACAACTCTCTTGTTGTTCAGTTTCTTGTATTTGCCCACAAGTTTGTGCACATCGATACCATGGCAGTT
CTTCAGATGACTCACAAGGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTGAAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAAGGTGATTT
>TRINITY_DN124247_c0_g1_i7 from sample A1 / Example unspliced isoform:TTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGgtccagttgaatgcatttgagtattttatgttttggtttgcttattatgctgtatgcaaagataatgatgttatgaatcgttcagATTCAGATGAAATGAAATCAGGGTTTAAGAAGGTTTCCCGGTCTCGTTTCGAGAAATGGGCATCCTCTCT
GCATGGTTTGCACGGTAGCCATGGCAGTAGAATACCTGGAAAGTTCAGTTCTAGCCCTTATCTGCAGCTTCTGAATCTATATCTGCACAATTTTGTTACAATATCTGATTTGTGTGCTTCTAGTGTGTCTGTACATTCTTTTGAGGAGAACCCTTCGATATTTTCTCGCGCAGAGTTTGTTGTTCATACCTTTGTACAGT
TTTGGTTGGTGAATGACGATTTTTCGCCCCTGCCTTTACGACTTTGCCAGTCTTTTGGTATCTTGTTACCTGTTAGTAATCAGTATTATAGGTATGCGCTCCCTAGTGTAGAACTTACCGAGGCTGTGAGAATACTGGTGAATTATGTAAACGGTACTTTGTTATCCCCTCAAGAAGAGTCGAGTTCTAGATGGAGGGTT
GCATCACAAATGGATACTTTGAGATTGAGCTCATTTTCTCTGCCGCTGAGCAGTCTTGTTCTGCCTGCTACGTGGCCCCTTCTGTTACAGAGGCCTTTGTACAGGTTTATATTGCGAGCTCTCAGTTATTGGCCAATCGGTACTTCTCTGAAGAAGGCTACATATATTATTGATTTATGGTTGGATTATTTACAGCCTTG
GAAAACTGGTGCAGAAGGCGAAATCATGCCTGCTCTCGAAGAGGATCATTATTCCGAGGCCGAGAATAAGATGCTGAGGGATCGGGATCAACGATTATCTCCACTTTCAGGGAGTTCGCTTTCAAAGACAAAGATTGCTATGGACTCTGTGGGGTCGGTAATAAAAAGAAGCACAAAAGAAAGTTGTTATGGATATAATG
ACCAGTGGCAAAATTATGTTATGGCGAATTATCCTTTCTACAACTCTCTTGTTGTTCAGTTTCTTGTATTTGCCCACAAGTTTGTGCACATCGATACCATGGCAGTTCTTCAGATGACTCACAAGGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTG
AAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAGGGTGATTTATCAAATTTTGAGAAAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAGTT
GCTAATTTTGCGAGCAGAAGCTTGGATTCAGACAGGATCGGGGGAGAAGATATCACCTGTTATGAATTCGCTAGAAGCTCTGAAAGGTCTGACTAGCAGAATTTTTGGTTCATGTGAAATGGGGGCTCCGGTTGAATTGGAATCCATGTATAATTCAGAGAACGAAAAATTGCATTTCATAAAACATCCAGGACTTGGTC
GCCATACATGGGAAGACATTAAATATAGAGGTGACTGGATGAGGCGTCCGATTGAAGACACTGAAGTTGATTGGTTGGCTAGGCTTCTTGTCAGGGTTTCGGAATGGCTGAATACAAGACTAGGACTGGATCATCAAGAGAGCACAGTTCACATCACTAATAGCTGGGGTGAGAACTCTTATGATAGCATGAGGACTTCA
GAACCTATATTTGCAGAGATCATTGAAGATGCGGACGAAGTTTCTCTTGTGGATTTTTTATCTAATCGGACAACTTGGATAAATCTCCTTTCCACAATTTTGTCACCTGTTATATACTGTTCTGTTTTACTATCTAAATTTGTACTGACAGTATTAAGAAGAAGTGGCTGCCGGATAAATTTGAGAATCATGGCAGAGAA
AAAGGTTTTGGTATTCATCTTTACTTGTATCATACTTACCATATTATCAAAGATTTTTAAGCATTATTCTTATTTTGTATTGTTGTCAGACTCTCCTATATATGTACATTGCCTTTCATTTGAATTTAGCTTTATT
Intron 2 GTCCAGTTGA ... ACATCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.9 | 42 | 113 | 26 |
| A2 | 81.25 | 18 | 78 | 16 |
| A3 | 71.74 | 39 | 99 | 20 |
| A4 | 76.47 | 36 | 117 | 9 |
| A5 | 83.93 | 9 | 47 | 3 |
| A6 | 68.81 | 34 | 75 | 25 |
| A7 | 69 | 93 | 207 | 48 |
| A8 | 53.23 | 58 | 66 | 40 |
| A9 | 68.12 | 66 | 141 | 33 |
| A10 | 69.29 | 113 | 255 | 56 |
>TRINITY_DN124247_c0_g1_i3 from sample A1 / Example spliced isoformTTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTGAAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGA
GGGTGATTTATCAAATTTTGAGAAAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAG
>TRINITY_DN124247_c0_g1_i9 from sample A1 / Example unspliced isoform:TTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGgtccagttgaatgcatttgagtattttatgttttggtttgcttattatgctgtatgcaaagataatgatgttatgaatcgttcagattcagatgaaatgaaatcagggtttaagaaggtttcccggtctcgtttcgagaaatgggcatcctctct
gcatggtttgcacggtagccatggcagtagaatacctggaaagttcagttctagcccttatctgcagcttctgaatctatatctgcacaattttgttacaatatctgatttgtgtgcttctagtgtgtctgtacattcttttgaggagaacccttcgatattttctcgcgcagagtttgttgttcatacctttgtacagt
tttggttggtgaatgacgatttttcgcccctgcctttacgactttgccagtcttttggtatcttgttacctgttagtaatcagtattataggtatgcgctccctagtgtagaacttaccgaggctgtgagaatactggtgaattatgtaaacggtactttgttatcccctcaagaagagtcgagttctagatggagggtt
gcatcacaaatggatactttgagattgagctcattttctctgccgctgagcagtcttgttctgcctgctacgtggccccttctgttacagaggcctttgtacaggtttatattgcgagctctcagttattggccaatcggtacttctctgaagaaggctacatatattattgatttatggttggattatttacagccttg
gaaaactggtgcagaaggcgaaatcatgcctgctctcgaagaggatcattattccgaggccgagaataagatgctgagggatcgggatcaacgattatctccactttcagggagttcgctttcaaagacaaagattgctatggactctgtggggtcggtaataaaaagaagcacaaaagaaagttgttatggatataatg
accagtggcaaaattatgttatggcgaattatcctttctacaactctcttgttgttcagtttcttgtatttgcccacaagtttgtgcacatcgataccatggcagttcttcagatgactcacaaggtgcattgttctttcctttgccctatgtcttactgatagcgtcaaacaatagatggataaacattgactctttaa
gcaaagccccatggttgtttaaagcaagatccaatggtggatcaaggatttgtctagtcagacatgggaaacctaatcgtagaagtgtgaaaaacaaataattggaacttcttatttcgtaggaataataacttagtaggaaaggagaataagttttgtccaggttcaaaatgcagattgccaccctttgtagatagaat
ttgcctatgcagtaagtgctatataaagagaaaagatcaatattaacaaccgacgattcatttctgatacattaagttatggccctgcgaatgaacgcagggcatcttttttttaacgtgtcctttgtagtattactgtattctttattttgccagaagacaggttttataatttgttgaagtctgttgtaaactaatat
gatattttgtttacatctgtagGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTGAAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAGGGTGATTTATCAAATTTTGAGA
AAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAGTTGCTAATTTTGCGAGCAGAAGCTTGGATTCAGACAGGATCGGGGGAGAAGATATCACCTGTTATGAATTCGCTAGAAGCTCTGAAAGGTCTGACTAGCAGAATT
TTTGGTTCATGTGAAATGGGGGCTCCGGTTGAATTGGAATCCATGTATAATTCAGAGAACGAAAAATTGCATTTCATAAAACATCCAGGACTTGGTCGCCATACATGGGAAGACATTAAATATAGAGGTGACTGGATGAGGCGTCCGATTGAAGACACTGAAGTTGATTGGTTGGCTAGGCTTCTTGTCAGGGTTTCGGA
ATGGCTGAATACAAGACTAGGACTGGATCATCAAGAGAGCACAGTTCACATCACTAATAGCTGGGGTGAGAACTCTTATGATAGCATGAGGACTTCAGAACCTATATTTGCAGAGATCATTGAAGATGCGGACGAAGTTTCTCTTGTGGATTTTTTATCTAATCGGACAACTTGGATAAATCTCCTTTCCACAATTTTGT
CACCTGTTATATACTGTTCTGTTTTACTATCTAAATTTGTACTGACAGTATTAAGAAGAAGTGGCTGCCGGATAAATTTGAGAATCATGGCAGAGAAAAAGGTTTTGGTATTCATCTTTACTTGTATCATACTTACCATATTATCAAAGATTTTTAAGCATTATTCTTATTTTGTATTGTTGTCAGACTCTCCTATATAT
GTACATTGCCTTTCATTTGAATTTAGCTTTATT
Intron 3 GTCCAGTTGA ... GACTCACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.66 | 42 | 113 | 71 |
| A2 | 77.22 | 18 | 78 | 44 |
| A3 | 67.63 | 39 | 99 | 64 |
| A4 | 70.25 | 36 | 117 | 53 |
| A5 | 78.82 | 9 | 47 | 20 |
| A6 | 72.58 | 34 | 75 | 105 |
| A7 | 70.71 | 93 | 207 | 242 |
| A8 | 69.63 | 58 | 66 | 200 |
| A9 | 70.34 | 66 | 141 | 172 |
| A10 | 69.91 | 113 | 255 | 270 |
>TRINITY_DN124247_c0_g1_i3 from sample A1 / Example spliced isoformTTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTGAAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGA
GGGTGATTTATCAAATTTTGAGAAAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAG
>TRINITY_DN124247_c0_g1_i7 from sample A1 / Example unspliced isoform:TTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGgtccagttgaatgcatttgagtattttatgttttggtttgcttattatgctgtatgcaaagataatgatgttatgaatcgttcagattcagatgaaatgaaatcagggtttaagaaggtttcccggtctcgtttcgagaaatgggcatcctctct
gcatggtttgcacggtagccatggcagtagaatacctggaaagttcagttctagcccttatctgcagcttctgaatctatatctgcacaattttgttacaatatctgatttgtgtgcttctagtgtgtctgtacattcttttgaggagaacccttcgatattttctcgcgcagagtttgttgttcatacctttgtacagt
tttggttggtgaatgacgatttttcgcccctgcctttacgactttgccagtcttttggtatcttgttacctgttagtaatcagtattataggtatgcgctccctagtgtagaacttaccgaggctgtgagaatactggtgaattatgtaaacggtactttgttatcccctcaagaagagtcgagttctagatggagggtt
gcatcacaaatggatactttgagattgagctcattttctctgccgctgagcagtcttgttctgcctgctacgtggccccttctgttacagaggcctttgtacaggtttatattgcgagctctcagttattggccaatcggtacttctctgaagaaggctacatatattattgatttatggttggattatttacagccttg
gaaaactggtgcagaaggcgaaatcatgcctgctctcgaagaggatcattattccgaggccgagaataagatgctgagggatcgggatcaacgattatctccactttcagggagttcgctttcaaagacaaagattgctatggactctgtggggtcggtaataaaaagaagcacaaaagaaagttgttatggatataatg
accagtggcaaaattatgttatggcgaattatcctttctacaactctcttgttgttcagtttcttgtatttgcccacaagtttgtgcacatcgataccatggcagttcttcagatgactcacaagGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTG
AAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAGGGTGATTTATCAAATTTTGAGAAAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAGTT
GCTAATTTTGCGAGCAGAAGCTTGGATTCAGACAGGATCGGGGGAGAAGATATCACCTGTTATGAATTCGCTAGAAGCTCTGAAAGGTCTGACTAGCAGAATTTTTGGTTCATGTGAAATGGGGGCTCCGGTTGAATTGGAATCCATGTATAATTCAGAGAACGAAAAATTGCATTTCATAAAACATCCAGGACTTGGTC
GCCATACATGGGAAGACATTAAATATAGAGGTGACTGGATGAGGCGTCCGATTGAAGACACTGAAGTTGATTGGTTGGCTAGGCTTCTTGTCAGGGTTTCGGAATGGCTGAATACAAGACTAGGACTGGATCATCAAGAGAGCACAGTTCACATCACTAATAGCTGGGGTGAGAACTCTTATGATAGCATGAGGACTTCA
GAACCTATATTTGCAGAGATCATTGAAGATGCGGACGAAGTTTCTCTTGTGGATTTTTTATCTAATCGGACAACTTGGATAAATCTCCTTTCCACAATTTTGTCACCTGTTATATACTGTTCTGTTTTACTATCTAAATTTGTACTGACAGTATTAAGAAGAAGTGGCTGCCGGATAAATTTGAGAATCATGGCAGAGAA
AAAGGTTTTGGTATTCATCTTTACTTGTATCATACTTACCATATTATCAAAGATTTTTAAGCATTATTCTTATTTTGTATTGTTGTCAGACTCTCCTATATATGTACATTGCCTTTCATTTGAATTTAGCTTTATT
Intron 4 GTGCATTGTT ... ACATCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.8 | 71 | 26 | 26 |
| A2 | 32.82 | 44 | 27 | 16 |
| A3 | 28.09 | 64 | 30 | 20 |
| A4 | 27.89 | 53 | 32 | 9 |
| A5 | 31.03 | 20 | 15 | 3 |
| A6 | 25.53 | 105 | 47 | 25 |
| A7 | 22.81 | 242 | 95 | 48 |
| A8 | 24.39 | 200 | 89 | 40 |
| A9 | 21.82 | 172 | 63 | 33 |
| A10 | 21.85 | 270 | 95 | 56 |
>TRINITY_DN124247_c0_g1_i1 from sample A1 / Example spliced isoformTTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGGTCCAGTTGAATGCATTTGAGTATTTTATGTTTTGGTTTGCTTATTATGCTGTATGCAAAGATAATGATGTTATGAATCGTTCAGATTCAGATGAAATGAAATCAGGGTTTAAGAAGGTTTCCCGGTCTCGTTTCGAGAAATGGGCATCCTCTCT
GCATGGTTTGCACGGTAGCCATGGCAGTAGAATACCTGGAAAGTTCAGTTCTAGCCCTTATCTGCAGCTTCTGAATCTATATCTGCACAATTTTGTTACAATATCTGATTTGTGTGCTTCTAGTGTGTCTGTACATTCTTTTGAGGAGAACCCTTCGATATTTTCTCGCGCAGAGTTTGTTGTTCATACCTTTGTACAGT
TTTGGTTGGTGAATGACGATTTTTCGCCCCTGCCTTTACGACTTTGCCAGTCTTTTGGTATCTTGTTACCTGTTAGTAATCAGTATTATAGGTATGCGCTCCCTAGTGTAGAACTTACCGAGGCTGTGAGAATACTGGTGAATTATGTAAACGGTACTTTGTTATCCCCTCAAGAAGAGTCGAGTTCTAGATGGAGGGTT
GCATCACAAATGGATACTTTGAGATTGAGCTCATTTTCTCTGCCGCTGAGCAGTCTTGTTCTGCCTGCTACGTGGCCCCTTCTGTTACAGAGGCCTTTGTACAGGTTTATATTGCGAGCTCTCAGTTATTGGCCAATCGGTACTTCTCTGAAGAAGGCTACATATATTATTGATTTATGGTTGGATTATTTACAGCCTTG
GAAAACTGGTGCAGAAGGCGAAATCATGCCTGCTCTCGAAGAGGATCATTATTCCGAGGCCGAGAATAAGATGCTGAGGGATCGGGATCAACGATTATCTCCACTTTCAGGGAGTTCGCTTTCAAAGACAAAGATTGCTATGGACTCTGTGGGGTCGGTAATAAAAAGAAGCACAAAAGAAAGTTGTTATGGATATAATG
ACCAGTGGCAAAATTATGTTATGGCGAATTATCCTTTCTACAACTCTCTTGTTGTTCAGTTTCTTGTATTTGCCCACAAGTTTGTGCACATCGATACCATGGCAGTTCTTCAGATGACTCACAAGGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTG
AAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAGGGTGATTTATCAAATTTTGAGAAAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAGGT
AAGTTTTTGCAGATACTTCTAATTTTTCTTTTTCTGTTTGTGTACCCTCACTCGGTTAATGGGGCAGGTATACAACTTTAGACATTCATCTGTACATCAAATTGAGAACCTCATAAAGATAATAAATCTAAAGTTAGCTCTGATTTTCAAATAATAAATC
>TRINITY_DN124247_c0_g1_i9 from sample A1 / Example unspliced isoform:TTTTTTTGAAATAAAGAGGAGGAGAGGATCCCACCTTGATATGCCTATAATACTAAATGAGAGCTTCAACCCAATGTAGTGTAGGGTTTAGTGATTCTCCATGAGGGCTCAGCCGACTTCGAAGGGTTTATCTTACTGTAAAATTGAAGTGCAATGGCCGTGTCCTCGTCTTCTCCGACGGATTCCTCTTACGAAGCTCT
AGAGTTAAGGTCGCTGTTATTGAATGCCTCTTCTTCCTCGTCTGATATTCTGAATTCATGTCGGGCCGTGGAAACCTTCATTGACACGCACACCAGGGATCAGGCCAGGAATTTTTACATAACATGCTTCCCCGTTTTGCTCCGCAAGATCTTCGGCTTCGAGGAGGTCTTGCAGCCGTCCGGCATTTGCGGATGGATCG
CACATACCTCATCGCATTGCTCGATTGCGATCGTCAATCTCCTCTCGCCGTCCGGAGCTTTGTTTTCTTCAATCTTTGCCGCAGACGAGGATAATGTGGTTCGCTATGTGTTTCCATCCGAGCGCTTTCCGGCTTGGATTCGTCCCATGCTTCAATCGGAGAGGGGTTTGTATAGCTTATCTGAAGCTTGCCCTGCTTTA
TTTAAAGGACGATTGAAGGAGGACATACATGGAGGAACATTTCAGGTCCAGTTGAATGCATTTGAGTATTTTATGTTTTGGTTTGCTTATTATGCTGTATGCAAAGATAATGATGTTATGAATCGTTCAGATTCAGATGAAATGAAATCAGGGTTTAAGAAGGTTTCCCGGTCTCGTTTCGAGAAATGGGCATCCTCTCT
GCATGGTTTGCACGGTAGCCATGGCAGTAGAATACCTGGAAAGTTCAGTTCTAGCCCTTATCTGCAGCTTCTGAATCTATATCTGCACAATTTTGTTACAATATCTGATTTGTGTGCTTCTAGTGTGTCTGTACATTCTTTTGAGGAGAACCCTTCGATATTTTCTCGCGCAGAGTTTGTTGTTCATACCTTTGTACAGT
TTTGGTTGGTGAATGACGATTTTTCGCCCCTGCCTTTACGACTTTGCCAGTCTTTTGGTATCTTGTTACCTGTTAGTAATCAGTATTATAGGTATGCGCTCCCTAGTGTAGAACTTACCGAGGCTGTGAGAATACTGGTGAATTATGTAAACGGTACTTTGTTATCCCCTCAAGAAGAGTCGAGTTCTAGATGGAGGGTT
GCATCACAAATGGATACTTTGAGATTGAGCTCATTTTCTCTGCCGCTGAGCAGTCTTGTTCTGCCTGCTACGTGGCCCCTTCTGTTACAGAGGCCTTTGTACAGGTTTATATTGCGAGCTCTCAGTTATTGGCCAATCGGTACTTCTCTGAAGAAGGCTACATATATTATTGATTTATGGTTGGATTATTTACAGCCTTG
GAAAACTGGTGCAGAAGGCGAAATCATGCCTGCTCTCGAAGAGGATCATTATTCCGAGGCCGAGAATAAGATGCTGAGGGATCGGGATCAACGATTATCTCCACTTTCAGGGAGTTCGCTTTCAAAGACAAAGATTGCTATGGACTCTGTGGGGTCGGTAATAAAAAGAAGCACAAAAGAAAGTTGTTATGGATATAATG
ACCAGTGGCAAAATTATGTTATGGCGAATTATCCTTTCTACAACTCTCTTGTTGTTCAGTTTCTTGTATTTGCCCACAAGTTTGTGCACATCGATACCATGGCAGTTCTTCAGATGACTCACAAGgtgcattgttctttcctttgccctatgtcttactgatagcgtcaaacaatagatggataaacattgactctttaa
gcaaagccccatggttgtttaaagcaagatccaatggtggatcaaggatttgtctagtcagacatgggaaacctaatcgtagaagtgtgaaaaacaaataattggaacttcttatttcgtaggaataataacttagtaggaaaggagaataagttttgtccaggttcaaaatgcagattgccaccctttgtagatagaat
ttgcctatgcagtaagtgctatataaagagaaaagatcaatattaacaaccgacgattcatttctgatacattaagttatggccctgcgaatgaacgcagggcatcttttttttaacgtgtcctttgtagtattactgtattctttattttgccagaagacaggttttataatttgttgaagtctgttgtaaactaatat
gatattttgtttacatctgtagGTATTAAGTGTTTTGATATCTTCAAAAGAGCTACTGTGTCTTATTCGAAGCATTGATCTGGCATACAATGATGTGAAGTCAGGGAGTGCTCCATACTGTTTTGACAGTTTGCATAAGGTTGTACCTGCCATCCGAGAGCAGCTACAGGACTGGGAGGGTGATTTATCAAATTTTGAGA
AAGGCACTGAAATTATTCACTCTCCTTTGCAAAGAGGAACACCGATGTTGCATCTTTTCAGCACCAGCGATCGTGGAGGCCATCAAATGCTGAAGTTGCTAATTTTGCGAGCAGAAGCTTGGATTCAGACAGGATCGGGGGAGAAGATATCACCTGTTATGAATTCGCTAGAAGCTCTGAAAGGTCTGACTAGCAGAATT
TTTGGTTCATGTGAAATGGGGGCTCCGGTTGAATTGGAATCCATGTATAATTCAGAGAACGAAAAATTGCATTTCATAAAACATCCAGGACTTGGTCGCCATACATGGGAAGACATTAAATATAGAGGTGACTGGATGAGGCGTCCGATTGAAGACACTGAAGTTGATTGGTTGGCTAGGCTTCTTGTCAGGGTTTCGGA
ATGGCTGAATACAAGACTAGGACTGGATCATCAAGAGAGCACAGTTCACATCACTAATAGCTGGGGTGAGAACTCTTATGATAGCATGAGGACTTCAGAACCTATATTTGCAGAGATCATTGAAGATGCGGACGAAGTTTCTCTTGTGGATTTTTTATCTAATCGGACAACTTGGATAAATCTCCTTTCCACAATTTTGT
CACCTGTTATATACTGTTCTGTTTTACTATCTAAATTTGTACTGACAGTATTAAGAAGAAGTGGCTGCCGGATAAATTTGAGAATCATGGCAGAGAAAAAGGTTTTGGTATTCATCTTTACTTGTATCATACTTACCATATTATCAAAGATTTTTAAGCATTATTCTTATTTTGTATTGTTGTCAGACTCTCCTATATAT
GTACATTGCCTTTCATTTGAATTTAGCTTTATT