sp|Q94BV2|SGF11_ARATH ----> SAGA-associated factor 11

Intron 1 GTTAGAATTT ... ATTCCATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	57.61	39	53	4
A2	53.52	33	38	6
A3	49.62	66	65	16
A4	50	40	40	5
A5	51.72	28	30	0
A6	48.84	221	211	3
A7	49.37	320	312	3
A8	47.28	184	165	12
A9	49.47	284	278	2
A10	49.75	302	299	7

>TRINITY_DN105820_c0_g1_i1 from sample A3 / Example spliced isoform

AGCAAGAGATGCTGGTGTTTGCAGAGCTGCTCGATTCTGTGATCGTTGATGTGGCCGCGGAGAGCCACCGCGCGGCGCGCTTGGGATTCGATCGCAGGTTCGATACTGAAGAGGAAGAGGAGTTTAGGGCTTCAATGGAGGCTAGGTCAATGTTAGCAGACCCGAGCAGTAGCCATAGTGGGGAAAATAACATTAAACAT
ACTGTTGATATATTTGGGCAAACACATCCCGCCGTGGCCGTTGAGATTTTCGATTGTATGAACTGTGGGAGACCGATCGGGGCTGGAAGATTTGCTCCACATCTTGAAAAATGCATGGGAAAGCGTGACAATCGGCCCAAATTCCAATTACGTCCGGTACTACAAGCCGCCCATTTTCCCGGAGGGCGTTTGAACGCAAA
CCATTCTTGAAGAGCACTTTCCCGTTATCCCTGCAAGATGCCCTCAGAAGGGCAAACCATTATTCACTAGCATTTTCGTTGGCAAGCTATCTGCACACGAAGTAAGATACAAGCCTACGAAATGCTCCCTCTCCCACGTCTCTTTCCAGCGTTTTGCTGGAATTGTGAAATCCAGCTAATGAGATGGAGTCTTTGGTGTG
CCTTGTGTTTTCGACCCATTTTAGTTTTTGAGTTGCACTGGGCTTGTGGGATTCTAGCGAGG

>TRINITY_DN105820_c0_g1_i4 from sample A3 / Example unspliced isoform:

TATAAGTCCGACACGAACCTGAGGTTGTCAAAGTACAAATGAACTTTTTCCACGTTTCCAATGAACTTCACCAGATCCAAATTCGCTTCCTCTTCTTTCTTGAATATTCTCAAGATCGGCGGCTATTAACTTGCCACACGTAAATTATTTGCATCGACCTTTATTAAGTTGCCACGTGTAGCTCATTTTTGTCCATCGAC
GGCTGAAATTTCCTCTCTCTCCCAGAATCCTATGTTTGTACAGTCTGTTACATTAACCCTTCTCGCCATTGGAGGGCCTGTTATTTGAATTTTTTCTTTCAATCCTGTCCGAATCGGCCCCAACCGATTCCAAATCCTCGTTCGCTGTCTCGGCCCGAGCAAATACATGTGTTGAACGCCGGGTTTCGACCTCGAGATCT
CAAGATGTGTTAACCCTAGGCTGTCAGGGTTTTCAACGCCAGTGTTCATGGCTGCCGACGATGGCAAGCAAGAGATGCTGGTGTTTGCAGAGCTGCTCGATTCTGTGATCGTTGATGTGGCCGCGGAGAGCCACCGCGCGGCGCGCTTGGGATTCGATCGCAGGTTCGATACTGAAGAGGAAGAGGAGTTTAGGGCTTCA
ATGGAGGCTAGGTCAATGTTAGCAGACCCGAGCAGTAGCCATAGTGGGGAAAATAACATTAAACATACTGTTGATATATTTGGGCAAACACATCCCGCCGTGGCCGTTGAGATTTTCGATTGTATGAACTGTGGGAGACCGATCGGGGCTGGAAGATTTGCTCCACATCTTGAAAAATGCATGGGAAAGgttagaatttc
gtggatatgtaaataagtttttatttttattttagactttttttcgttttttatgtttttctttttttaatttatttaagtgggtcctttaaattccatcagCGTGACAATCGGCCCAAATTCCAATTACGTCCGGTACTACAAGCCGCCCATTTTCCCGGAGGGCGTTTGAACGCAAACCATTCTTGAAGAGCACTTTC
CCGTTATCCCTGCAAGATGCCCTCAGAAGGGCAAACCATTATTCACTAGCATTTTCGTTGGCAAGCTATCTGCACACGAAGTAAGATACAAGCCTACGAAATGCTCCCTCTCCCACGTCTCTTTCCAGCGTTTTGCTGGAATTGTGAAATCCAGCTAATGAGATGGAGTCTTTGGTGTGCCTTGTGTTTTCGACCCATTT
TAGTTTTTGAGTTGCACTGGGCTTGTGGGATTCTAGCGAGG

Intron 2 GTTCTAAATT ... AAACATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	36.52	113	13.3	65
A2	29.59	119	12.5	50
A3	30.81	128	19.5	57
A4	37.74	99	14.3	60
A5	20	40	9.2	10
A6	32.13	471	58.7	223
A7	27.28	693.2	76.3	260
A8	34.18	701	69.3	364
A9	30.14	730	93.7	315
A10	28.75	466	45.2	188

>TRINITY_DN125982_c0_g3_i3 from sample A1 / Example spliced isoform

TGAACTTTTTCCATGTTTCCAATGAACTTCACCAGATCCAAATTCGCTTCCTCTTCTTTCTTGAATATTCTCAAGATCGGCGGCTATTAACTTGCCACACGTAAATTATTTGCATCAACCTTTATTAAGTTGCCACGTGTAGCTCCTTTTTGTCCATCGACGGCTGAAATTTCCTCTCTCTCCCAGAATCCTATGTTTGT
ACAGTCTGTTACATTAACCCTTCTCGCCATTGGAGGGCCTGTTATTTGAATTTTTTCTTTCAATCCTGTCCGAATCGGCCCCAACCGATTCCAAATCCTCGTTCGCTGTCTCGGCCCGAGCAAATACATGTGTTGAACGCCGGGTTTCGACCTCGAGATCTCAAGATGTGTTAACCCTAGGCTGTCAGGGTTTTCAACGC
CAGTGTTCATGGCTGCCGACGATGGCAAGCAAGAGATGCTGGTGTTTGCAGAGCTGCTCGATTCTGTGATCGTTGATGTGGCCGCGGAGAGCCACCGCGCGGCGCGCTTGGGATTCGATCGCAGGTTCGATACTGAAGAGGAAGAGGAGTTTAGGGCTTCAATGGAGGCTAGGTCAATGTTAGCAGACCCGAGCAGTAGC
CATAGTGGGGAAAATAACATTAAACATACTGTTGATATATTTGGGCAAACACATCCCGCCGTGGCCGTTGAGATTTTCGATTGTATGAACTGTGGGAGACCGATCGGGGCTGGAAGATTTGCTCCACATCTTGAAAAATGCATGGGAAAGGGTCGGAATACTCGCCTTAAAGCTACTAGGAGTAATACTTCTTTGCAACA
GCGTCGTGCCCGCACTAACCCTATCCCAGTATACAACACATCCCTGAGTTCAGGTGGAACTTACAATGCAAACAGGACACCAAACAGGACTTCAGCCACAACCGTAGAGGGCTTTCAGAAATCAGCAGTAGATTTCACAGAAGGCACTTCTTAAGAAAGACTCAAGGATGATGGAAAGGTTGCTTGATATCTTTTTGAAA
ATCATCCAGCTGGGAGTCCATCTTACACCTTGTGGAGAATGGTTTCCAACGATTTTTCACATCTCAATGTGCTATGGGATTCAGGAAGTGAACCATTGGCATGATAAAGCTGTCTATACCCAAATATTACATTCATTGTTACCATATTCTTTCCGGAATAGCAGATTGTTAAAAATTGGAAGATAGATTATACCTCGAGA
TTAAGTTTTAGTTGAGTTGAGAACTGGACCTAATTGAAATGGAGTGGTAAAGAACCGATGCTGAGAAGGACAGGATGAACACTGAGAAATCTTGTTGTCTTGTTAGAACTGTAGATAATGGGCTGTCCCTCAGATGAGGGAAGAGGTAAACTCCATGTAAACTATGGCTAGAAAGTATGGCCGAGATATTCTTAATCCTT
TTAACTGTTATCAACACAATGAAGATACTTCTATAGCCTTTGTAGTGATAACAGCTGAGTGATGGTTCTGGTTTCATGTCCTTTGAAAAAAGTTGGCTATGGAGCTTTTTCTATTATTGACCATTGTGTGGAAACTGCACATCAGGACAATTGTGTATGGAAGCATACCGACCTATCTACAAGGATAAAATTGCCATACT
CATTAAAAAAATGTACTTTAGAGAATTCAGATGAATTAATATACCAATATTTCTTTTCTTTATTTTGTCCTTGACATGTTTCACCTTCATCTTACATGAACACTGATTATTCTTGATCTTTGGACTGGGCGTAGAAAAGAATATTTCTTTTTTCATTCTCTGCTCTCGAGCTTGCATGTTTGGTATAGATCATCCCCATT
ATTCATGTAACTTTGAAACAACTCCA

>TRINITY_DN125982_c0_g3_i1 from sample A1 / Example unspliced isoform:

TGAACTTTTTCCATGTTTCCAATGAACTTCACCAGATCCAAATTCGCTTCCTCTTCTTTCTTGAATATTCTCAAGATCGGCGGCTATTAACTTGCCACACGTAAATTATTTGCATCAACCTTTATTAAGTTGCCACGTGTAGCTCCTTTTTGTCCATCGACGGCTGAAATTTCCTCTCTCTCCCAGAATCCTATGTTTGT
ACAGTCTGTTACATTAACCCTTCTCGCCATTGGAGGGCCTGTTATTTGAATTTTTTCTTTCAATCCTGTCCGAATCGGCCCCAACCGATTCCAAATCCTCGTTCGCTGTCTCGGCCCGAGCAAATACATGTGTTGAACGCCGGGTTTCGACCTCGAGATCTCAAGATGTGTTAACCCTAGGCTGTCAGGGTTTTCAACGC
CAGTGTTCATGGCTGCCGACGATGGCAAGCAAGAGATGCTGGTGTTTGCAGAGCTGCTCGATTCTGTGATCGTTGATGTGGCCGCGGAGAGCCACCGCGCGGCGCGCTTGGGATTCGATCGCAGGTTCGATACTGAAGAGGAAGAGGAGTTTAGGGCTTCAATGGAGGCTAGGTCAATGTTAGCAGACCCGAGCAGTAGC
CATAGTGGGGAAAATAACATTAAACATACTGTTGATATATTTGGGCAAACACATCCCGCCGTGGCCGTTGAGATTTTCGATTGTATGAACTGTGGGAGACCGATCGGGGCTGGAAGATTTGCTCCACATCTTGAAAAATGCATGGGAAAGGGTCGGAATACTCGCCTTAAAGCTACTAGGAGTAATACTTCTTTGCAACA
GCGTCGTGCCCGCACTAACCCTATCCCAGTATACAACACATCCCTGAGTTCAGGTGGAACTTACAATGCAAACAGGACACCAAACAGGACTTCAGCCACAACCGTAGAGGGCTTTCAGAAATCAGCAGTAGATTTCACAGAAGGCACTTCTTAAGAAAGACTCAAGGATGATGGAAAGgttctaaatttgttttcctctt
tatttcattcgtgctcctcttacaaatggttcttgatatttccagacagcaatggtgttatttgtggaaacaagttcctctgcaaaactcgtcaacttgcttgcatttaaatcacaatggttggcaatagacttgcaggccttgaataactattttcatttgttttaaacatacagGTTGCTTGATATCTTTTTGAAAAT
CATCCAGCTGGGAGTCCATCTTACACCTTGTGGAGAATGGTTTCCAACGATTTTTCACATCTCAATGTGCTATGGGATTCAGGAAGTGAACCATTGGCATGATAAAGCTGTCTATACCCAAATATTACATTCATTGTTACCATATTCTTTCCGGAATAGCAGATTGTTAAAAATTGGAAGATAGATTATACCTCGAGATT
AAGTTTTAGTTGAGTTGAGAACTGGACCTAATTGAAATGGAGTGGTAAAGAACCGATGCTGAGAAGGACAGGATGAACACTGAGAAATCTTGTTGTCTTGTTAGAACTGTAGATAATGGGCTGTCCCTCAGATGAGGGAAGAGGTAAACTCCATGTAAACTATGGCTAGAAAGTATGGCCGAGATATTCTTAATCCTTTT
AACTGTTATCAACACAATGAAGATACTTCTATAGCCTTTGTAGTGATAACAGCTGAGTGATGGTTCTGGTTTCATGTCCTTTGAAAAAAGTTGGCTATGGAGCTTTTTCTATTATTGACCATTGTGTGGAAACTGCACATCAGGACAATTGTGTATGGAAGCATACCGACCTATCTACAAGGATAAAATTGCCATACTCA
TTAAAAAAATGTACTTTAGAGAATTCAGATGAATTAATATACCAATATTTCTTTTCTTTATTTTGTCCTTGACATGTTTCACCTTCATCTTACATGAACACTGATTATTCTTGATCTTTGGACTGGGCGTAGAAAAGAATATTTCTTTTTTCATTCTCTGCTCTCGAGCTTGCATGTTTGGTATAGATCATCCCCATTAT
TCATGTAACTTTGAAACAACTCCA

Intron 3 GTTCTAAATT ... AAACATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	26.38	113	16	65
A2	22.22	119	18	50
A3	24.93	128	28	57
A4	28.26	99	18	60
A5	22.33	40	13	10
A6	24.22	471	78	223
A7	21.11	693	110.8	260
A8	24.3	701	86	364
A9	23.16	730	125	315
A10	21.33	465.8	64.5	188

>TRINITY_DN99348_c0_g1_i3 from sample A4 / Example spliced isoform

ATGAACTTTTTCCACGTTTCCAATGAACTTCACCAGATCCAAATTCGCTTCCTCTTCTTTCTTGAATATTCTCAAGATCGGCGGCTATTAACTTGCCACACGTAAATTATTTGCATCAACCTTTATTAAGTTGCCACGTGTAGCTCATTTTTGTCCATCGACGGCTGAAATTTCCTCTCTCTCCCAGAATCCTATGTTTG
TACAGTCTGTTACATTAACCCTTCTCGCCATTGGAGGGCCTGTTATTTGAATTTTTTCTTTCAATCCTGTCCGAATCGGCCCCAACCGATTCCAAATCCTCGTTCGCTGTCTCGGCCCGAGCAAATACATGTGTTGAACGCCGGGTTTCGACCTCGAGATCTCAAGATGTGTTAACCCTAGGCTGTCAGGGTTTTCAACG
CCAGTGTTCATGGCTGCCGACGATGGCAAGCAAGAGATGCTGGTGTTTGCAGAGCTGCTCGATTCTGTGATCGTTGATGTGGCCGCGGAGAGCCACCGCGCGGCGCGCTTGGGATTCGATCGCAGGTTCGATACTGAAGAGGAAGAGGAGTTTAGGGCTTCAATGGAGGCTAGGTCAATGTTAGCAGACCCGAGCAGTAG
CCATAGTGGGGAAAATAACATTAAACATACTGTTGATATATTTGGGCAAACACATCCCGCCGTGGCCGTTGAGATTTTCGATTGTATGAACTGTGGGAGACCGATCGGGGCTGGAAGATTTGCTCCACATCTTGAAAAATGCATGGGAAAGGGTCGGAATACTCGCCTTAAAGCTACTAGGAGTAATACTTCTTTGCAAC
AGCGTCGTGCCCGCACTAACCCTATCCCAGTATACAACACATCCCTGAGTTCAGGTGGAACTTACAATGCAAACAGGACACCAAACAGGACTTCAGCCACAACCGTAGAGGGCTTTCAGAAATCAGCAGTAGATTTCACAGAAGGCACTTCTTAAGAAAGACTCAAGGATGATGGAAAGGTTGCTTGATATCTTTTTGAA
AATCATCCAGCTGGGAGTCCATCTTACACCTTGTGGAGAATGGTTTCCAACGATTTTTCACATCTCAATGTGCTATGGGATTCAGGAAGTGAACCATTGGCATGATAAAGCTGTCTATACCCAAATATTACATTCATTGTTACCATATTCTTTCCGGAATAGCAGATTGTTAAAAATTGGAAGATAGATTATACCTCGAG
ATTAAGTTTTAGTTGAGTTGAGAACTGGACCTAATTGAAATGGAGTGGTAAAGAACCGATGCTGAGAAGGACAGGATGAACACTGAGAAATCTTGTTGTCTTGTTAGAACTGTAGATAATGGGCTGTCCCTCAGATGAGGGAAGAGGTAAACTCCATGTAAACTATGGCTAGAAAGTATGGCCGAGATATTCTTAATCCT
TTTAACTGTTATCAACACAATGAAGATACTTCTATAGCCTTTGTAGTGATAACAGCTGAGTGATGGTTCTGGTTTCATGTCCTTTGAAAAAAGTTGGCTATGGAGCTTTTTCTATTATTGACCATTGTGTGGAAACTGCACATCAGGACAATTGTGTATGGAAGCATACCGACCTATCTACAAGGATAAAATTGCCATAC
TCATTAAAAAAATGTACTTTAGAGAATTCAGATGAATTAATATACCAATATTTCTTTTCTTTATTTTGTCCTTGACATGTTTCACCTTCATCTTACATGAACACTGATTATTCTTGATCTTTGGACTGGGCGTAGAAAAGAATATTTCTTTTTTTCATTCTCTGCTCTCGAGCTTGCATGTTTGGTATAGATCATCCCCA
TTATTCATGTAACTTTGAAACAACTCC

>TRINITY_DN99348_c0_g1_i5 from sample A4 / Example unspliced isoform:

AAAACATTTAATACATAAAAACTGTAAATTAATTATGAGATTTCTAGGATAGGATTATCAAGTGGAGAAGTCTCATCTCATTGTGCATGATTGGATAGCTGAAGAAATCAAAGTAAATAACAAACAGTTTGCTGTCCCTCACAAAATGTACCTGACGTGGCTAAACTCTGTTCCTTACATGTGAATTACAGGGTCGGAAT
ACTCGCCTTAAAGCTACTAGGAGTAATACTTCTTTGCAACAGCGTCGTGCCCGCACTAACCCTATCCCAGTATACAACACATCCCTGAGTTCAGGTGGAACTTACAATGCAAACAGGACACCAAACAGGACTTCAGCCACAACCGTAGAGGGCTTTCAGAAATCAGCAGTAGATTTCACAGAAGGCACTTCTTAAGAAAG
ACTCAAGGATGATGGAAAGgttctaaatttgttttcctcctttttatttcattcgtgctcctcttacaaatggttcttgatatttccagacagcaatggtgttatttgtggaaacaagttcctctgcaaaactcgtcaacttgcttgcatttaaatcacaatggttggcaatagacttgcaggccttgaataactatttt
catttgttttaaacatacagGTTGCTTGATATCTTTTTGAAAATCATCCAGCTGGGAGTCCATCTTACACCTTGTGGAGAATGGTTTCCAACGATTTTTCACATCTCAATGTGCTATGGGATTCAGGAAGTGAACCATTGGCATGATAAAGCTGTCTATACCCAAATATTACATTCATTGTTACCATATTCTTTCCGGAA
TAGCAGATTGTTAAAAATTGGAAGATAGATTATACCTCGAGATTAAGTTTTAGTTGAGTTGAGAACTGGACCTAATTGAAATGGAGTGGTAAAGAACCGATGCTGAGAAGGACAGGATGAACACTGAGAAATCTTGTTGTCTTGTTAGAACTGTAGATAATGGGCTGTCCCTCAGATGAGGGAAGAGGTAAACTCCATGT
AAACTATGGCTAGAAAGTATGGCCGAGATATTCTTAATCCTTTTAACTGTTATCAACACAATGAAGATACTTCTATAGCCTTTGTAGTGATAACAGCTGAGTGATGGTTCTGGTTTCATGTCCTTTGAAAAAAGTTGGCTATGGAGCTTTTTCTATTATTGACCATTGTGTGGAAACTGCACATCAGGACAATTGTGTAT
GGAAGCATACCGACCTATCTACAAGGATAAAATTGCCATACTCATTAAAAAAATGTACTTTAGAGAATTCAGATGAATTAATATACCAATATTTCTTTTCTTTATTTTGTCCTTGACATGTTTCACCTTCATCTTACATGAACACTGATTATTCTTGATCTTTGGACTGGGCGTAGAAAAGAATATTTCTTTTTTTCATT
CTCTGCTCTCGAGCTTGCATGTTTGGTATAGATCATCCCCATTATTCATGTAACTTTGAAACAACTCC