NA ----> NA
Intron 1 GTACAAGTAA ... TTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 8 | 14 | 10 |
| A2 | 81.25 | 3 | 14 | 12 |
| A3 | 51.52 | 8 | 6 | 11 |
| A4 | 54.17 | 11 | 10 | 16 |
| A5 | 53.85 | 6 | 2 | 12 |
| A6 | 54.47 | 28 | 26 | 41 |
| A7 | 59.02 | 25 | 25 | 47 |
| A8 | 51.49 | 49 | 41 | 63 |
| A9 | 56.3 | 52 | 54 | 80 |
| A10 | 64.1 | 14 | 10 | 40 |
>TRINITY_DN36888_c0_g1_i4 from sample A7 / Example spliced isoformCATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATA
TTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCC
GTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAAT
GAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACAT
CAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTC
GGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCA
TGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCT
ACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTT
GGCCTCCGTTCTGTCATGGCTGGCTGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTA
ACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATT
AGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATCCC
>TRINITY_DN36888_c0_g1_i3 from sample A7 / Example unspliced isoform:CATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATA
TTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCC
GTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAAT
GAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACAT
CAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTC
GGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCA
TGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCT
ACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTT
GGCCTCCGTTCTGTCATGGCTGGCTGgtacaagtaactactgatgcatttgggtaaattcgacactttcctgtttgactacgatttctgtccatctataatattttttctcttttattggtttgttgataatggaatcttcgtatgatgacaacaacggcataccacttaatcatggagcaggtaccaaatctgctggtt
tgattaagtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccagGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACA
GGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCC
TTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATCCC
Intron 2 GTACAAGTAA ... TTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.29 | 8 | 11 | 8 |
| A2 | 79.31 | 3 | 10 | 13 |
| A3 | 55.56 | 8 | 7 | 13 |
| A4 | 55.1 | 11 | 13 | 14 |
| A5 | 57.14 | 6 | 4 | 12 |
| A6 | 56.92 | 28 | 32 | 42 |
| A7 | 61.24 | 25 | 31 | 48 |
| A8 | 56.44 | 49 | 59 | 68 |
| A9 | 54.59 | 52 | 49 | 76 |
| A10 | 69.57 | 14 | 22 | 42 |
>TRINITY_DN36888_c0_g1_i4 from sample A7 / Example spliced isoformCATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATA
TTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCC
GTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAAT
GAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACAT
CAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTC
GGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCA
TGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCT
ACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTT
GGCCTCCGTTCTGTCATGGCTGGCTGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTA
ACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATT
AGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATCCC
>TRINITY_DN36888_c0_g1_i2 from sample A7 / Example unspliced isoform:CATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATA
TTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCC
GTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAAT
GAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACAT
CAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTC
GGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCA
TGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCT
ACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTT
GGCCTCCGTTCTGTCATGGCTGGCTGgtacaagtaactactgatgcatttgggtaccaaatctgctggtttgattaagtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccagGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAAC
AAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTG
CGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAAT
TATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATCCC
Intron 3 GTAAATTCGA ... CATGGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.83 | 13 | 11 | 11 |
| A2 | 51.85 | 13 | 16 | 12 |
| A3 | 35.71 | 9 | 6 | 4 |
| A4 | 41.94 | 9 | 4 | 9 |
| A5 | 25 | 6 | 2 | 2 |
| A6 | 43.31 | 36 | 22 | 33 |
| A7 | 48.39 | 32 | 28 | 32 |
| A8 | 34.07 | 60 | 33 | 29 |
| A9 | 45.28 | 58 | 47 | 49 |
| A10 | 33.86 | 42 | 3 | 40 |
>TRINITY_DN110681_c0_g1_i2 from sample A1 / Example spliced isoformGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGGTACCAAATCTGCTGGTTTGATTAAGTAATCGACTAGCACTGGATTCCTTGGTTTTGATTTTGGAAATCCAATGTTTTAACTTGTCCCCAGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATT
TTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCA
ACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTC
ATTTCTGTGTTCTAGG
>TRINITY_DN110681_c0_g1_i3 from sample A1 / Example unspliced isoform:GTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgtaaattcgacactttcctgtttgactacgatttctgtccatctataatattttttctcttttattggtttgttgataatggaatcttcgtatgatgacaacaacggcataccacttaatcatggagcagGTACCAAATCTGCTGGTTTGATTA
AGTAATCGACTAGCACTGGATTCCTTGGTTTTGATTTTGGAAATCCAATGTTTTAACTTGTCCCCAGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAG
GACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATG
ATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGG
Intron 4 GTACCAAATC ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.58 | 7 | 13 | 6 |
| A2 | 69.23 | 4 | 13 | 5 |
| A3 | 69.23 | 4 | 9 | 9 |
| A4 | 80.95 | 2 | 9 | 8 |
| A5 | 66.67 | 2 | 6 | 2 |
| A6 | 64.13 | 40 | 36 | 107 |
| A7 | 71.43 | 24 | 32 | 88 |
| A8 | 70.03 | 43 | 60 | 141 |
| A9 | 62.44 | 40 | 58 | 75 |
| A10 | 84.62 | 6 | 42 | 24 |
>TRINITY_DN36680_c0_g1_i2 from sample A9 / Example spliced isoformGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTA
GGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA
>TRINITY_DN36680_c0_g1_i4 from sample A9 / Example unspliced isoform:GTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgtaccaaatctgctggtttgattaagtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccaggttcaatgagacttgttaattttgaacttgcaacttgacctacgatgatatcggaacaagatt
ttttgaggataccttgtaatgacatagagaatctattagcatttctcaatcagtaatgagcacaggtaaggacattgattcttcagtaaaaagcaatttgtacgccatgtaactacggacttcagaagtgtatggattcatgttgagccaatccagaaagatgaagtgattatctctttccccaaacacttgtgcgatca
acttttttattgtttcaatcatgtagaggcatattgatcaagctaagttttttcatgcagAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTC
ATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA
Intron 5 GTACCAAATC ... TTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.22 | 10 | 13 | 8 |
| A2 | 76.47 | 4 | 13 | 13 |
| A3 | 57.89 | 8 | 9 | 13 |
| A4 | 62.16 | 7 | 9 | 14 |
| A5 | 60 | 6 | 6 | 12 |
| A6 | 58.21 | 28 | 36 | 42 |
| A7 | 63.49 | 23 | 32 | 48 |
| A8 | 56.64 | 49 | 60 | 68 |
| A9 | 57.76 | 49 | 58 | 76 |
| A10 | 82.35 | 9 | 42 | 42 |
>TRINITY_DN30325_c0_g1_i1 from sample A6 / Example spliced isoformATACATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGG
ATATTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGA
TCCGTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGC
AATGAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTA
CATCAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATAC
CTCGGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGC
GCATGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTC
TCTACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGC
TTTGGCCTCCGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCT
TCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTG
TACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATTTAGAATTATTAACGAATTATCTA
AGTGTTCACATATGGTTTGTGATTATTTCACTACATTTCTATGCTTTTTAGTGGTTTGGGGATGAGAACACGTTTGGGGAGACCCCCCAAATTTCATGGGACAGCACCCCAAAAAAATATGAAAGAAAATGCAAAATTTCAACATTTTATATTCAATTTAAAACACGAAGAACCTAA
>TRINITY_DN30325_c0_g1_i2 from sample A6 / Example unspliced isoform:ATACATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGG
ATATTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGA
TCCGTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGC
AATGAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTA
CATCAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATAC
CTCGGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGC
GCATGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTC
TCTACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGC
TTTGGCCTCCGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgtaccaaatctgctggtttgattaagtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccagGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGG
AACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTT
GTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCA
AATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATTTAGAATTATTAACGAATTATCTAAGTGTTCACATATGGTTTGTGATTATTTCACTACATTTCTATGCTTTTTAGTGGTTTGGGGATGAGAACACGTTTGGGGAGACCCCCCAAATTTCATGGGACAGCACCC
CAAAAAAATATGAAAGAAAATGCAAAATTTCAACATTTTATATTCAATTTAAAACACGAAGAACCTAA
Intron 6 GTAAATTCGA ... TTGTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.22 | 10 | 11 | 10 |
| A2 | 77.78 | 4 | 16 | 12 |
| A3 | 51.52 | 8 | 6 | 11 |
| A4 | 58.82 | 7 | 4 | 16 |
| A5 | 53.85 | 6 | 2 | 12 |
| A6 | 52.94 | 28 | 22 | 41 |
| A7 | 61.98 | 23 | 28 | 47 |
| A8 | 49.48 | 49 | 33 | 63 |
| A9 | 56.44 | 49 | 47 | 80 |
| A10 | 70.49 | 9 | 3 | 40 |
>TRINITY_DN30325_c0_g1_i1 from sample A6 / Example spliced isoformATACATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGG
ATATTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGA
TCCGTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGC
AATGAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTA
CATCAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATAC
CTCGGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGC
GCATGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTC
TCTACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGC
TTTGGCCTCCGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGCACAGGTAAGGACATTGATTCT
TCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGAGCCTTGATGATGATATCCCTG
TACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATTTAGAATTATTAACGAATTATCTA
AGTGTTCACATATGGTTTGTGATTATTTCACTACATTTCTATGCTTTTTAGTGGTTTGGGGATGAGAACACGTTTGGGGAGACCCCCCAAATTTCATGGGACAGCACCCCAAAAAAATATGAAAGAAAATGCAAAATTTCAACATTTTATATTCAATTTAAAACACGAAGAACCTAA
>TRINITY_DN30325_c0_g1_i3 from sample A6 / Example unspliced isoform:ATACATGGAGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGG
ATATTTCGTGGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGA
TCCGTGCCTGCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGC
AATGAGCATTGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTA
CATCAGATTCCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATAC
CTCGGAATCACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGC
GCATGCCTTTTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTC
TCTACTCATGTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGC
TTTGGCCTCCGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgtaaattcgacactttcctgtttgactacgatttctgtccatctataatattttttctcttttattggtttgttgataatggaatcttcgtatgatgacaacaacggcataccacttaatcatggagcaggtaccaaatctgctg
gtttgattaagtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccagGTTCAATGAGACTTGTTAATTTTGAACTTGCAACTTGACCTACGATGATATCGGAACAAGATTTTTTGAGGATACCTTGTAATGACATAGAGAATCTATTAGCATTTCTCAATCAGTAATGAGC
ACAGGTAAGGACATTGATTCTTCAGTAAAAAGCAATTTGTACGCCATGTAACTACGGACTTCAGAAGTGTATGGATTCATGTTGAGCCAATCCAGAAAGATGAAGTGATTATCTCTTTCCCCAAACACTTGTGCGATCAACTTTTTTATTGTTTCAATCATGTAGAGGCATATTGATCAAGCTAAGTTTTTTCATGCAGA
GCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCATTTA
GAATTATTAACGAATTATCTAAGTGTTCACATATGGTTTGTGATTATTTCACTACATTTCTATGCTTTTTAGTGGTTTGGGGATGAGAACACGTTTGGGGAGACCCCCCAAATTTCATGGGACAGCACCCCAAAAAAATATGAAAGAAAATGCAAAATTTCAACATTTTATATTCAATTTAAAACACGAAGAACCTAA
Intron 7 GTTCAATGAG ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.33 | 7 | 10 | 6 |
| A2 | 52.94 | 4 | 4 | 5 |
| A3 | 68 | 4 | 8 | 9 |
| A4 | 78.95 | 2 | 7 | 8 |
| A5 | 66.67 | 2 | 6 | 2 |
| A6 | 62.79 | 40 | 28 | 107 |
| A7 | 69.81 | 24 | 23 | 88 |
| A8 | 68.84 | 43 | 49 | 141 |
| A9 | 60.78 | 40 | 49 | 75 |
| A10 | 73.33 | 6 | 9 | 24 |
>TRINITY_DN36680_c0_g1_i2 from sample A9 / Example spliced isoformGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTA
GGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA
>TRINITY_DN36680_c0_g1_i1 from sample A9 / Example unspliced isoform:GTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgttcaatgagacttgttaattttgaacttgcaacttgacctacgatgatatcggaacaagattttttgaggataccttgtaatgacatagagaatctattagcatttctcaatcagtaatgagcacaggtaaggacattgattcttcagtaaaa
agcaatttgtacgccatgtaactacggacttcagaagtgtatggattcatgttgagccaatccagaaagatgaagtgattatctctttccccaaacacttgtgcgatcaacttttttattgtttcaatcatgtagaggcatattgatcaagctaagttttttcatgcagAGCCTTGATGATGATATCCCTGTACAATCAG
ATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA
Intron 8 GTAAATTCGA ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.84 | 7 | 11 | 6 |
| A2 | 72.41 | 4 | 16 | 5 |
| A3 | 65.22 | 4 | 6 | 9 |
| A4 | 75 | 2 | 4 | 8 |
| A5 | 50 | 2 | 2 | 2 |
| A6 | 61.72 | 40 | 22 | 107 |
| A7 | 70.73 | 24 | 28 | 88 |
| A8 | 66.92 | 43 | 33 | 141 |
| A9 | 60.4 | 40 | 47 | 75 |
| A10 | 69.23 | 6 | 3 | 24 |
>TRINITY_DN36680_c0_g1_i2 from sample A9 / Example spliced isoformGTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGAGCCTTGATGATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTA
GGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA
>TRINITY_DN36680_c0_g1_i3 from sample A9 / Example unspliced isoform:GTGAAACAAACGCAGCGTAGAAATCTGGGGTCCATGGAAGGATATTTTGCGGTATCTTTTACCAGGTCCTCTGAAAGCACCGGTAGTTTCTCTAAACTGAGGATCATATCAATGTAGAGCATCTCCAAACTTTTTTAACATATACATGGAGTGAAACAAACGCACTGTTGAATTTTGGGGTCAATGGAAGGATATTTCGT
GGTATATACATATTCTAGCATCTTTTACCAAGTTCTCTGAAAGCACCGGTGGTTTCTTTAAACTGAGAATTGAAGAGGGACGGTCTCCTGCCACGCGCAGGGAGTAGGGAGTTAAATTTTATTGTATACATAAATCCAAAGAAGTCGAATTGACGATTTTGAGAGGAGGAATGGGTGATTTGAGGAGGAGATCCGTGCCT
GCTACTGCAAAATCTGCCATTGCTGAGGCCACACGACCCAATTTATCCTCAGATGAAGGCCCCCATATTCAACCAAAATACAAACAAATACTGGTTATTGGGCTGATCTGCCTCTGCCCATATTTATATATGTTGTTTTATCATTATAACGTAGAAGACGAGTTGAGACAATCCATTCTAATCAACATGGCAATGAGCAT
TGGAGCATTTTTTGCTACAGCTTTTATCATCCCAGTGGCTTCCAAATACGTTCTTAGGAGAAACATGTTTGGGTATGATATCAATAAGAAGGGTTCTCCTCAAGGCTCTATCAAAGTGCCAGAGTCACTTGGTCTTGTAACCGGAGTTGTGTACTTGGTGGTTGCTATACTGTTTCAACTCTTCAATTTTACATCAGATT
CCATTTGGCTTGTGGAGTATAATGCGGCATTGGGATCCATTTGCTTCATGCTTTTCCTTGGGTTTGTGGATGATGTCCTTGACATTCCTTGGCGTGTGAAATTGTTCTTACCTTCAATTGCAGCACTCCCTTTATTGATGGCATATGCGGGTCATACTACTATTCTCATTCCGAAGCCTCTTCACTCATACCTCGGAATC
ACAGTACTTGATTTAGGGTGGATATATAAGCTCTACATGTTTTTGCTGGCAGTATTCTGCACAAACTCTATAAATATTCATGCGGGTTTAAATGGTTTGGAAGTTGGCCAAACCATTGTTATTTCCTCAGCGATCTTGATCCATAATATCATGCAAATTGGACTATCTTCAAAGGATGACTATAAGCAAGCGCATGCCTT
TTCTATCTATCTTATCCAGCCTTTGATTGGAGCTTCGCTGGGTTTACTTACTTATAACTGGTATCCATCTTCAGTGTTTGTCGGCGATACATTTACTTACTTTGCTGGAATGGCACTGGCAGTGGTTGGCATACTTGGCCATTTCAGTGAAACACTGCTATTATTCTTCTTGCCGCAAGTTCTGAACTTTCTCTACTCAT
GTCCTCAGCTTTTCAAATTCGTGCCCTGCCCTCGACATCGTCTACCAAGCTATGATCCTCAAACAGGACTTCTGACAGGAAGCAGAGACATGAATCTTGTAAATCTATTTTTAAGATTGTTTGGAAGATGTTCGGAGGCATCTCTTTGTGTCAAATTGTTAGCATTCCAGGCTCTGGCATGTGCTTTCTGCTTTGGCCTC
CGTTCTGTCATGGCTGGCTGGTACAAGTAACTACTGATGCATTTGGgtaaattcgacactttcctgtttgactacgatttctgtccatctataatattttttctcttttattggtttgttgataatggaatcttcgtatgatgacaacaacggcataccacttaatcatggagcaggtaccaaatctgctggtttgatta
agtaatcgactagcactggattccttggttttgattttggaaatccaatgttttaacttgtccccaggttcaatgagacttgttaattttgaacttgcaacttgacctacgatgatatcggaacaagattttttgaggataccttgtaatgacatagagaatctattagcatttctcaatcagtaatgagcacaggtaag
gacattgattcttcagtaaaaagcaatttgtacgccatgtaactacggacttcagaagtgtatggattcatgttgagccaatccagaaagatgaagtgattatctctttccccaaacacttgtgcgatcaacttttttattgtttcaatcatgtagaggcatattgatcaagctaagttttttcatgcagAGCCTTGATG
ATGATATCCCTGTACAATCAGATCTGCCAGGGTCCAGGATTAGTCTCGTTTATGTTATTCTGCAGATATCTCACCACATTTTTGCATAGAAAGAACAAATAATCTTTGGTTGTTGAAAGCAAATTATGTCATTTCTGTGTTCTAGGACCTGTTTATAATATCTTATGAAAATGGCAATTTTGGTGCA