sp|Q9M0R2|PATL5_ARATH ----> Patellin-5
Intron 1 GTAATGACCT ... TGTCTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.85 | 1 | 10.5 | 4 |
| A2 | 36.37 | 5.7 | 3 | 2 |
| A3 | 44.91 | 2.3 | 2.8 | 1 |
| A4 | 24.2 | 8.9 | 2.9 | 2 |
| A5 | 31.46 | 5 | 4.8 | 0 |
| A6 | 36.59 | 19.3 | 12 | 6.9 |
| A7 | 42.02 | 16 | 12.8 | 9 |
| A8 | 50.53 | 29.8 | 33.1 | 20.8 |
| A9 | 52.06 | 27.9 | 24.6 | 31 |
| A10 | 43.68 | 37 | 34.3 | 19.9 |
>TRINITY_DN108668_c0_g1_i3 from sample A2 / Example spliced isoformTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAATGGATTGGAATTATATA
GATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGG
ACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGA
GTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGAT
ATTCCAGCCAGCGAGATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGC
>TRINITY_DN108668_c0_g1_i2 from sample A2 / Example unspliced isoform:TCACTGTAGAGACTTTGGAAGCTGAAACTGAGAAATTTAAGGCTGCAGATATTTACCTTTGGGGAGTTCCTCTGCTTCACACCAATGGCGATGAGAGAACTGATGTCATTTTGTTGAAATTTCTCCGGGCAAGAGACTTTAAAGTACAGGAAGCCTTTGAAATGCTTAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAA
ACGGACTCCATATTGGAAGAGGACTTTGgtaatgaccttgatggagtagcttacatgaatggatatgacaaagaaggtcatcccgtttgttacaatgtttatggtgtcttccagGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGAGAGTTCAGTTATTGGAGAAGGG
GATTCAGCAGCTCAGTTTCAGCCCTGGAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGT
TTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAAT
ATGCAGTTGGGTGTTGGTTTTCTAATATGGGC
Intron 2 GTAATTGAAT ... GGATCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 3 | 14 | 4 |
| A2 | 36.51 | 20 | 15 | 8 |
| A3 | 44 | 7 | 8 | 3 |
| A4 | 14.29 | 9 | 1 | 2 |
| A5 | 20 | 6 | 2 | 1 |
| A6 | 26.47 | 50 | 16 | 20 |
| A7 | 30.61 | 34 | 17 | 13 |
| A8 | 25.69 | 107 | 25 | 49 |
| A9 | 33.03 | 74 | 37 | 36 |
| A10 | 38.46 | 40 | 22 | 28 |
>TRINITY_DN40147_c0_g1_i6 from sample A6 / Example spliced isoformCCATGATGCTTGGGAAAGAAGCGAAGGGAAAGGAGGACAGTGGGAAGATGCCCTCCACCCCCGCTCAGAAAATTTCAGGCTTTTTAGTGTTTTTAAAGCTGGGTTTTATTGTTTATGTATATATATTTTTATTTTCCATGGTGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAATGGAT
TGGAATTATATTGATCTTCACAGCGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGGTGGGTGGCTCTCTTTCCTTTTTTCTTTATTTTCTTTTCAAGTTCTACTAAGTGCTGAATGCTTC
TTGTTATTTGGGGATATAGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGTAATGACCTTGATGGAGTAGCTTACATGAATGGATATGACAAAGAAGTTCATCACGTTTGTTACAATGTTTATGGTGTC
TTCCAGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAA
GCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGATG
TGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTCCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGT
TTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAAT
>TRINITY_DN40147_c0_g1_i11 from sample A6 / Example unspliced isoform:CCCAAACTTGTATTCAAGTATGCACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTG
AGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCT
GAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATC
ACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAG
AGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGgtaattgaatctttacatacaaaatcttaaagttgtttccccaattatagacattccaatcacagaggtaattgaatctttacaagcgaaacctgaagttgttttcctaattctgtagcttacatatatattgctctataaccaggt
tttttctgttgttgtgttgttttcgattggatctacagATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTT
CCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAAT
Intron 3 GTGGGTGGCT ... TATAGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.78 | 15 | 14 | 5 |
| A2 | 15 | 17 | 5 | 1 |
| A3 | 26.32 | 7 | 4 | 1 |
| A4 | 47.37 | 5 | 6 | 3 |
| A5 | 11.11 | 12 | 2 | 1 |
| A6 | 15.62 | 27 | 6 | 4 |
| A7 | 26.83 | 30 | 11 | 11 |
| A8 | 31.31 | 34 | 19 | 12 |
| A9 | 29.66 | 51 | 27 | 16 |
| A10 | 33.33 | 42 | 26 | 16 |
>TRINITY_DN46759_c0_g1_i4 from sample A10 / Example spliced isoformAGCCGGGGACGGGCACGTGGCGGCCGATCTCCGGGACGCCACTGGTCATTGCCGGTGGCGATTTAGTAGCTCAGCACCGGGAAACCAAAAAAAAAAATCCGAGAGAGGAACGGGCCATGATGCTTGGGAAAGAAGCGAAGGGAAAGGAGGACAGTGGGAAGATGCCCTCCACCCCCGCTCAGAAAATTTCAGGCTTTTTA
GTGTTTTTAAAGCTGGGTTTTATTGTTTATGTATATATATTTTTATTTTCCATGGTGGGTTGAAGCTGGCAATGGCAATGGCGATGTGAGACAGTGTTACGACTGGCAATGGATTGGAATTATATTGATCTTCACAGCGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGC
TTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCT
TGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATC
ACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGGTAATTGAATCTTTACATACAAAATCTTAAAGTTGTTTCCCCAATTATAGACATTCCAATCACA
GAGGTAATTGAATCTTTACAAGCGAAACCTGAAGTTGTTTTCCTAATTCTGTAGCTTACATATATATTGCTCTATAACCAGGTTTTTTCTGTTGTTGTGTTGTTTTCGATTGGATCTACAGATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATT
GCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTCCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGT
ATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAATCAAAAA
>TRINITY_DN46759_c0_g1_i10 from sample A10 / Example unspliced isoform:AGCCGGGGACGGGCACGTGGCGGCCGATCTCCGGGACGCCACTGGTCATTGCCGGTGGCGATTTAGTAGCTCAGCACCGGGAAACCAAAAAAAAAAATCCGAGAGAGGAACGGGCCATGATGCTTGGGAAAGAAGCGAAGGGAAAGGAGGACAGTGGGAAGATGCCCTCCACCCCCGCTCAGAAAATTTCAGGCTTTTTA
GTGTTTTTAAAGCTGGGTTTTATTGTTTATGTATATATATTTTTATTTTCCATGGTGGGTTGAAGCTGGCAATGGCAATGGCGATGTGAGACAGTGTTACGACTGGCAATGGATTGGAATTATATTGATCTTCACAGCGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGC
TTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGgtgggtggctctctttccctttttctggatttcctttccaagttctacgaagtgctgaatgcttcttattatttggggatatagagcagTGGAGATTTGATCCGCAGGCCCCGGAGAAGGAGCGAGCGAGCTGGAGGGATCTATCTATCTA
TCTGTTTTTCTGTTTACGTGATTTGTCAGTGTCTTGTTTGTAATGCACATATATATTGAGTGACAGTCGAGTGGGGATTGATTGCCAATGGCTCACCATGGGGTTGGTGATAATTCTGCTGCAAATTGGGGATATACATCATCGTCATCAAAACTGCCACAGCTCCCTCCCAAGAGTCCATCTTTCGGGATTGTTGGTCA
AGATTCCAATAATAACAATGTTATGTATATGGGCTGGCCTAATATTCCCTTCCAAGGCAACAGTTTGAAACATCAGCGCACACCCTCAGTGGGCTATGTATCTTCACATGGCCAGCCTTCATGGATCGATGATCTGCTGGACTCACCCTCTGAAAATCCAGCAAAGAAGGGCCCCCATCATAGACGATCTGCAAGTGATT
CGCTTGCTTTCCTTGAAGCTCCAGTGAATTCTGCTCCAATAGAGGACATTGCAGAGGAAGATGAATTCGATTGCAGGAGTGCAGCATCCATACCATCCAAAGGATCCCAAGATTTCGACAGACTGGACGAGGAGCAGCTCATGTCAATGTTTGCTGACATTGAACCCTTCCATAAACAGCAAAATCAGTCAAATCAATCA
GCTTCTAATCATCATCCTGCTGCACCATCGACTGCTTTGGATAACAGATGTTCAGAGAGACAGACAATTTCTGAGAACCCTTCAACTCCATCCGATCACAACAGTATAAATGAGACTTCTATGGAGGAGAAAGTCATAACTGTATCAGGTCAGTTCAAAAGTGAGCCAGAAGTTCAAAGCATTTGCAAAAGTGAGCAGCC
ATTCCAGCAGGCGGTAAAGATTGAAATGCCCACATCGTCATCAACAATGGAGCTCGACCCAAACATTGATCCAAAAAGGGTGAAACGAATTTTAGCTAATAGACAATCCGCACAAAGATCCCGAGTAAGGAAGTTGCAGTATATTTCAGAGCTTGAAAGAAGTGTCAATGCATTACAGACAGAAGTGTCGACACTTTCTC
CTCAAGTGGCCTATCTGGATCATCAGCGAGTCCTGTTGAATGTAGACAACGGTGGCTTAAAACAAAGAATTGCTGCCCTTGCACAAGACAAACTTTTCAAGGATGCTCACTGCGAAGCATTGCAAAAGGAAGTTCAGAGGCTGAGACAACTATATCAGGAGCAGCAGCAACATAAAATGCAGAAAGAAGTAGCAGCATCC
ACAACAGGATCATTTGACTTGCAACAGCAGCAGTTTGGCAAGCTTGAGCACAATTCATCCCCACAGATGATAGAACAAAAGCCTGATCATGTTTCTGATTCATCAAATCTGATGAAAAGTGGTTCAGGAATCTCAGACCATAGAGAAAAAAATGCTGTCAATAACCATACTAGTTCTAGTTCTCAAATGCTGAAGGGAAT
GATGACTTCAGGCTGCCTTATGGGTGATGGTAACAAGTGCCTGGAAGAAAGAATGATGGGAGGAATGTCTCCTGATTACATGGTTCACAACACTTAAGTGCAACACTACTGCAGGTTTTTATTTGGGATTCTTGTGGTTATGGAGTATGAACTAAGGATTCTTACCATTTTTTTTTCTGTGTTTTGTTTGACCCCTCTCA
GCCCTGTATTGGATTGTTTCTGAATAACTTTTGCTTAGACACATTTTTTGTAGCAGAGGGCCGCTACCCTTCTGAATAAAATAGATTTAATCATTTATCTAACTACAGTTCTGCATTTCTAGTGTGATTTAGCGTGTCTTTAGATAGTATAACAGAGACTGTTTAAATCGGCTTCCCTTTC
Intron 4 GTAATTGAAT ... CAATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.73 | 3 | 14 | 2 |
| A2 | 47.62 | 11 | 15 | 5 |
| A3 | 53.85 | 6 | 8 | 6 |
| A4 | 71.43 | 1 | 1 | 4 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 49.12 | 29 | 16 | 40 |
| A7 | 52.38 | 30 | 17 | 49 |
| A8 | 63 | 37 | 25 | 101 |
| A9 | 59.51 | 33 | 37 | 60 |
| A10 | 70.53 | 14 | 22 | 45 |
>TRINITY_DN40147_c0_g1_i14 from sample A6 / Example spliced isoformCCCAAACTTGTATTCAAGTATGCACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTG
AGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCT
GAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATC
ACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGATTTTTATCAATGTGCCTTGGTGGTACTTTGCATTTTTCACAATGATATCGCCATTCATCACACATAGAACAAAGAACAAGTTTGTGATTGC
TTGGGCCTCCAGAGTCACTGAGACTCTATTCAAGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGTTGGGTGTTGGTTTTCTAATAT
GGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTCCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAA
T
>TRINITY_DN40147_c0_g1_i11 from sample A6 / Example unspliced isoform:CCCAAACTTGTATTCAAGTATGCACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTG
AGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCT
GAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATC
ACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAG
AGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGgtaattgaatctttacatacaaaatcttaaagttgtttccccaattatagacattccaatcacagaggtaattgaatctttacaagcgaaacctgaagttgttttcctaattctgtagcttacatatatattgctctataaccaggt
tttttctgttgttgtgttgttttcgattggatctacagatgtggatgatgatgctaataataaaaatgcatgatgctatgtgtttgtccggttggataaggtttggactgttacattgctttcgtttatcaatatgcagTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTT
CCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAAT
Intron 5 GTGGGTGGCT ... GGGGATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.79 | 15 | 13.8 | 3 |
| A2 | 15.33 | 16.6 | 5 | 1 |
| A3 | 22.99 | 6.3 | 2.8 | 1 |
| A4 | 40.75 | 7 | 6 | 3.7 |
| A5 | 10.42 | 12.4 | 1.3 | 1.7 |
| A6 | 16.47 | 25.4 | 6 | 4 |
| A7 | 23.8 | 28.8 | 11 | 7 |
| A8 | 30.81 | 36.6 | 19.6 | 13 |
| A9 | 26.9 | 51.5 | 27 | 11 |
| A10 | 33.9 | 43.1 | 26 | 18.3 |
>TRINITY_DN97422_c0_g2_i4 from sample A4 / Example spliced isoformCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGG
ATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGA
AGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCT
ACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCG
AGATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTA
>TRINITY_DN97422_c0_g2_i2 from sample A4 / Example unspliced isoform:CCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGG
ATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGgtgggtggctctctttccctttttctggatttcctttccaagttctacgaagtgctgaatgcttcttattatttggggatatagAGCAGT
GGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGG
Intron 6 GTGGGTGGCT ... TATAGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.47 | 14.1 | 12.3 | 2 |
| A2 | 14.69 | 16.1 | 4.6 | 1 |
| A3 | 7.79 | 5.3 | 0.9 | 0 |
| A4 | 39.89 | 6.7 | 4.9 | 4 |
| A5 | 15.87 | 12.9 | 0.9 | 4 |
| A6 | 16.95 | 23.6 | 5.6 | 4 |
| A7 | 23.97 | 27.4 | 10.3 | 7 |
| A8 | 35.06 | 33.1 | 18.9 | 17 |
| A9 | 25.69 | 47.6 | 24 | 9 |
| A10 | 35.51 | 41.1 | 23.4 | 22 |
>TRINITY_DN41274_c0_g1_i6 from sample A9 / Example spliced isoformCACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAAT
GGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAG
CTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGTAATGACCTTGATGGAGTAGCTTACATGAATGGATATGACAAAGAAGTTCATCACGTTTGTTACAATGTTTATGGTGTCTTCCAGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGG
AGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAATGTGCCTTGGTGGTACTTTGCA
TTTTTCACAATGATATCGCCATTCATCACACATAGAACAAAGAACAAGTTTGTGATTGCTTGGGCCTCCAGAGTCACTGAGACTCTATTCAAGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGC
AGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGATGTGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTC
CCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAATCATTATCAGATTTTTGTTCCTAAAGATGTTGTCTTAAAT
CTGAGACATGTTTTCTGAACATTACATTCTAGTTGAATGTCACCTTGACTTCATTAATGGTAACAAAACGTTTTTCTTTG
>TRINITY_DN41274_c0_g1_i2 from sample A9 / Example unspliced isoform:CACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAAT
GGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGgtgggtggctctctttccttttttctttattttcttttcaagttctactaagtgctgaatg
cttcttgttatttggggatatagagcagTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGTAATGACCTTGATGGAGTAGCTTACATGAATGGATATGACAAAGAAGTTCATCACGTTTGTTACAATGTTTATGG
TGTCTTCCAGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTA
CCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCCGAAAGATTTTTATCAATGTGCCTTGGTGGTACTTTGCATTTTTCACAATGATATCGCCATTCATCACACAGAGAACGAAGAGCAAGTTTGTGATTGCTCGGGCCTCCAAAGTCACTGAGACTCTATTCAAGTACATATCACCAGAATAT
GTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAGCAAATTATAGATATTCCAGCCACCGAGGTTGGGACTAGTCTGGTCTGGGATTTGACTGTTGTGGGGTGGGAAGTAAGCTACAAGGAAGAGTTCATCCCCAG
CGCCGAAGGATGTTACACTATCATCATTCAGAAGGAGAAGAAAATGGCAGCCCAGGAAGAAGCTGTTCGTAATTCCTTCAAAATTGGAGAGGCGGGAAAGGTTGTATTGACCATCGACAATCTGTCTTCCAGAAAGAAGAAACTCGTTTACAGGAGTAAGGTGAAGAGGCATCTGTAATGGGCGCGCAGTGCGATTTGTG
ATTCTTCTCTTATTTTGAGATAGCGTTTTTCAGGCTATGGAGGGCTGCTGGTGAATTATTATAGGTTTCGAAGTCCACTGGTTGAGTGTATGTCAGGGCAGGACGAGCAGGCACAGCCCTAGTCTATTTTCTGCTGTGAAATATGTGCCTCGTTGCGGAAGTTGTAAAGTGTGTGTGATAACCGTCAGCTGCGGTGCCCA
GTTTATACAGCATATTCTGACCGATTTGTGCGAATAATACGCTGTTTAATTATAAATAGCTATTTGATATGGATTTTTGTATTTAGGTTACCAGAAAAAAATATGTTTACCGGGGGTTTTTCATTATTTTTTATTATTATTCATATCGTTGTATCCTCTCGCATATTTATCATTATTAATTTAAGGATTTTTGCCACA
Intron 7 GTGGGTGGCT ... GGGGATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.22 | 15 | 12.4 | 2 |
| A2 | 13.93 | 16.7 | 4.4 | 1 |
| A3 | 10.09 | 6 | 1.4 | 0 |
| A4 | 38.61 | 7 | 4.8 | 4 |
| A5 | 16.35 | 12.3 | 0.8 | 4 |
| A6 | 16.96 | 25.6 | 5.4 | 5 |
| A7 | 22.67 | 29.1 | 10.1 | 7 |
| A8 | 32.34 | 37.1 | 18.5 | 17 |
| A9 | 23.72 | 51.7 | 23.4 | 9 |
| A10 | 34.43 | 42.7 | 22.9 | 22 |
>TRINITY_DN40147_c0_g1_i14 from sample A6 / Example spliced isoformCCCAAACTTGTATTCAAGTATGCACTCCTTCTCGTCCTTTTCGATTCAATCCCAAACTTGTAGTCATACACTTCCCCATTCTCAAACCTCGGTACCTAGAAACCCTAATTCCTGCCTACAGGTTGATGCTATACCTTATAGCATCAACCTGCAGGCAATGGCAATGGCGGGTTGAAGCTGGCAATGGCAATGACGATGTG
AGACAGTGTTACGACTGGCAATGGATTGGAATTATATAGATCTTCACAGGGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCT
GAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATC
ACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAAGCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGATTTTTATCAATGTGCCTTGGTGGTACTTTGCATTTTTCACAATGATATCGCCATTCATCACACATAGAACAAAGAACAAGTTTGTGATTGC
TTGGGCCTCCAGAGTCACTGAGACTCTATTCAAGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGTTGGGTGTTGGTTTTCTAATAT
GGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTCCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGTTTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAA
T
>TRINITY_DN40147_c0_g1_i6 from sample A6 / Example unspliced isoform:CCATGATGCTTGGGAAAGAAGCGAAGGGAAAGGAGGACAGTGGGAAGATGCCCTCCACCCCCGCTCAGAAAATTTCAGGCTTTTTAGTGTTTTTAAAGCTGGGTTTTATTGTTTATGTATATATATTTTTATTTTCCATGGTGGGTTGAAGCTGGCAATGGCAATGACGATGTGAGACAGTGTTACGACTGGCAATGGAT
TGGAATTATATTGATCTTCACAGCGATTTGCAAACCCAAAAGATTATATGTCTGTAGAAGGGTCATTGTGCTCCAGGAATCTGTGCTTTAGATTTGATTTGATGGACAGATGAGATAAATCAGAAAAGCCTGTGGgtgggtggctctctttccttttttctttattttcttttcaagttctactaagtgctgaatgcttc
ttgttatttggggatatagAGCAGTGGAGATTTGATCCGCAGGCCCTGGAGAAATGCTGAAGAACACCGTTCTGTGGAGAAAGAGCTTCAAAACGGACTCCATATTGGAAGAGGACTTTGGTAATGACCTTGATGGAGTAGCTTACATGAATGGATATGACAAAGAAGTTCATCACGTTTGTTACAATGTTTATGGTGTC
TTCCAGGATAGGGAGCTTTATCAGAAAAAGTTTGGCACAGAAGAGAAACGCCAGAGGTTCTTGCGATGGACAGTTCAGTTATTGGAGAAGGGGATTCAACAGCTCAATTTCATCCCTGCAGGTGTGAACTCCATGGTTCAGATCACTGATCTCAAGAATTCCCCCGGCCCTGGAAAGAAAGAGTTGAGACAAGCTACCAA
GCAGGCTTTGGATCTTCTGCAGGACAATTATCCCGAGTTCGTTGCCTGAAAGGTACATATCACCAGAATATGTGCCAGTGCAGTATGGTGGTTTGAATAGAGAGAACGATCAGGAATTATCTGGTGCAGATGGCGGAGTTACAGAGTTGATCATCAAGGCAGGAACCAAACAAATTATAGATATTCCAGCCAGCGAGATG
TGGATGATGATGCTAATAATAAAAATGCATGATGCTATGTGTTTGTCCGGTTGGATAAGGTTTGGACTGTTACATTGCTTTCGTTTATCAATATGCAGTTGGGTGTTGGTTTTCTAATATGGGAAATGGATTTTCATTACAGAATAATATCAGATTTTTCCCATCATGGGATTCTGATCTGGTTCAGTACTTGCTGAAGT
TTTCAATAGAAATTTGCCTTTCTTTTATAAAAAATAATGTCCAGGAACGAGTCTAAATTATGCAATGTGAAATGGTATTCTGCATCAATAATTTAATGATATTATCATATTTTCTTTAAAT