sp|B8ANX9|PHR1_ORYSI ----> Protein PHOSPHATE STARVATION RESPONSE 1

Intron 1 GTTTGGTATT ... TTATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	56.04	20	32	19
A2	50	20	23	17
A3	64	9	18	14
A4	56.1	9	9	14
A5	53.85	6	8	6
A6	61.26	49	115	40
A7	65.55	82	226	86
A8	67.79	134	417	147
A9	63.3	100	256	89
A10	58.7	70	131	68

>TRINITY_DN45175_c2_g1_i7 from sample A10 / Example spliced isoform

CACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGAAATATCAAATTGTTAAGTATATGAAAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGCCAA
ATAGTTTTTGTATATTAATCTTTGTAGCCTACTTTCCATAGAATTTCTTTTTAGTTAGATATTTCAGGGCAAATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAATCCCGAAGTCGTTGTACCAGCACAAATGTTCAAGAGATTCTTGATAGTAAAACCAAATTGAGATG
GATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGTAGCATCCAACTCTGTATTAATTTTGTATGTTTTTAGAGAAATCTCTCACACATAATTACAATCTTTACATTTTTTTTTGTTATCAAAAAAA

>TRINITY_DN45175_c2_g1_i1 from sample A10 / Example unspliced isoform:

CACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGgtttggtattgagacattgatttcagccttttttttgcatttcttggaaaaaaatttggtgcatttcttggaatttatttgatttgttggtccttttctgga
ataatttgaacatgtttttatttgcagAAATATCAAATTGTTAAGTATATGAAAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGCCAAATAGTTTTTGTATATTAATCTTTGTAGCCTACTTTCCATAGAATTTCTTTTTAGTTAGATATTTCAGGGCA
AATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAAGCCCGAAGTCGTTGTACCAACACAAATGTTCAAGATATTCTTGATAGTAAAACCAAATTGAGATGGATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATT
CTAGTAGCATCCAACTCTGTATTAATTTTGTATGTTTTTAGAGAAATCTCTCACACATAATTACAATCTTTACATTTTTTTTTGTTATCAAAAAAA

Intron 2 GTTTGGTATT ... TTATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.07	14	0	17
A2	51.78	14	0	15
A3	62.5	6	0	10
A4	60.87	9	0	14
A5	48.08	6.5	0	6
A6	50.82	30	0	31
A7	51.05	58.5	0	61
A8	51.06	92	0	96
A9	49.23	66	0	64
A10	50.25	50.5	0	51

>TRINITY_DN47362_c0_g1_i8 from sample A7 / Example spliced isoform

AAGCAACTCCAAAAGGTGTTTTAAATCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGAAATATCAAATTGTTAAGTATATGAAAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGCCAAATAGTTTTTCTATATTAATCT
TTGTAGCCTACTTTCCATAGAATTTCTTTTTAGTTAGATATTTCAGGGAAAATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAAGCCCGAAGTCGTTGTACCAACACAAATGTTCAAGATATTCTTGATATTAAAACCAAATTGAGATGGATTCTTGACATTAAAACCAA
ATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGCAGCATCCAACTCTGTATTAATTTTGTATGTTTTTAGAGAAATCTCTCACACATAATTACAATCTTTACATTTTTTTTTGTTATCTCAATTGTGTAAGAGATTGTGAATTTTGTGGTACTATCCAGGG

>TRINITY_DN47362_c0_g1_i12 from sample A7 / Example unspliced isoform:

ATCATGTGAAAAGCCACTTGCAGgtttggtattgagacattgatttcagcggtttttttttgcatttcttggaatttatttgatttgttgggtttggtattgagacattgatttcagcccttttttttgcatttcttggaaaaaaaattgttgcatttcttggaaattatttgatttgttggtcctttccgtccttttct
ggaatatggaataatttgaacatgtttttatttgcagAAATATCAAATTGTTAAGTATATGAAAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGCCAAATAGTTTTTCTATATTAATCTTTGTAGCCTACTTTCCATAGAATTTCTTTTTAGTTAGATA
TTT

Intron 3 GTTTGGTATT ... TTATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	58.64	25.8	34.7	18.6
A2	46.17	22.6	21.7	18.7
A3	57.47	15.6	19.1	13
A4	33.07	10.8	6.6	14
A5	56.12	7.4	9.4	6
A6	65.23	66.4	118.8	37.3
A7	64.19	149	241.9	81.3
A8	65.67	237.7	409.9	126.8
A9	61.63	170.8	257.7	72
A10	58.74	103	140.2	59.3

>TRINITY_DN45123_c0_g1_i12 from sample A6 / Example spliced isoform

TCATGCCAACTGGAGGAGATCACTCATGCCAACCCACGCAAAGGAGATCAAAGAAAGGAAAGAAAACAGTTTATTTGAAGATACCAGTCCATGGTGCTTGCAGATAAAAGCAAGGTGTAACTATCTTGGGCCAGTCCTCACAGAAAAAAATTATATGGAAGTGATCAAGCATCAAAGGACAAAGCGACCTTAATGCAATG
AAGACTTGTGTAGAAGAGTAATCGGTTTCCTGTCTATTGTACAATCTGTTGGATTGTATCTGTAGTTGTACAGGTTATATGGTGATGAGGTAATGTGGACTATTTTGGGCATGGTGAAATATTTTGCATATGTACCAACAAATGTAATTAAGAACAATACTGTCATTCAGTTAAGCCTGCCAGTTATCTGTTGCATTACC
ATGAGTTTATAAAACTTGCCTAACTTGGAAATGGCTCTCAGACGTTGAAATCCTTTAAGGCTGCTCCTTCTAATGATTATAATATCTAGTTAGGAAAGGAGTGAATGTTTTTCTGGGTATGGGACAGATTTAAGGAAAATTCAGAAATTGAGCCTCCTCGTTCACTACATAGGATATGGATCATTTTATCTTTTATTCCA
TGTCCCCTCTGTGTCTGTGTAAACTCATGATTCTGGATAAATAATCGTGGGAGGTTATGCAGATGGTTCCATTCACAACGTCGACTCTAACAAGAAATATCACGTGGCTCATCATTTCAAGTATCAAACACATGGATTTGAACTAACTTCTCCACTGTGGGATAATTTGTTTGGAACATACCCATAAAAAAATGAAAATG
AAGTGGCACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGAAATATCAAATTGTTAAGTATATGATAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGT
AGCCAAATAGTTTTTGGATATTAATCTTTGTAGCCTATTTTCCATAGAATTTCTCTTTAGTTAGATATTTCAGGGCAAATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAATCCCGAAGTCATTGCACTAGCACAAATGTTCAAGAGATTCTTGATAGTAAAACCAAATT
GAGATGGATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGTAGCATCCAACTCTGTATTAATTTTGTATGTTTTTAGAGAAATCTCTCACACATAATTACAATCTTTACATTTTTTTTTGTTATCTCAATTGTGTAAGAGATTGTGAATTTTGTGGTTG
TATCTAGG

>TRINITY_DN45123_c0_g1_i8 from sample A6 / Example unspliced isoform:

CGCATCATGGCCGAAAGAACTCAGATGGACAGAACAGACGACGAGGAGGAGATCAAGATCGTGATCGCGTGGAGATCATCAGTCTAAAGAAGACTCATGCCAACTGGAGGAGATCACTCATGCCAACCCACGCAAAGGAGATCAAAGAAAGGAAAGAAAACAGAAATATCACGTGGCTCATCATTTCAAGTATCAAACAC
ATGGATTTGAACTAACTTCTCCACTGTGGGATAATTTGTTTGGAACATACCCATAAAAAAATGAAAATGAAGTGGCACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGgtttggtattgagacattgatttcagc
ccttttttttgcatttcttggaaaaaaaattgttgcatttcttggaaattatttgatttgttggtcctttccgggaataatttgaacatgtttttatttgcagAAATATCAAATTGTTAAGTATATGATAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTA
GCCAAATAGTTTTTGGATATTAATCTTTGTAGCCTATTTTCCATAGAATTTCTCTTTAGTTAGATATTTCAGGGCAAATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAATCCCGAAGTCATTGCACTAGCACAAATGTTCAAGAGATTCTTGATAGTAAAACCAAATTG
AGATGGATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGTAGCATCCAACTCTGTATTAATTTTGTATGTTTTTAGAGAAATCTCTCACACATAATTACAATCTTTACATTTTTTTTTGTTATCTCAATTGTGTAAGAGATTGTGAATTTTGTGGTTGT
ATCTAGG

Intron 4 GTTTGGTATT ... TTATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.79	16	31	23
A2	56.1	18	27	19
A3	51.85	13	14	14
A4	61.7	9	12	17
A5	54.84	7	10	7
A6	58.54	51	107	37
A7	63.41	90	230	82
A8	66.39	141	414	143
A9	61.5	108	257	88
A10	55.49	71	121	56

>TRINITY_DN43452_c2_g1_i7 from sample A9 / Example spliced isoform

TGGCACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGAAATATCAAATTGTTAAGTATATGATAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGC
CAAATAGTTTTTCTATATTAATCTTTGTAGCCTATTTTCCATAGAATTTCTCTTTAGTTAGATATTTCAGGGCAAATCTTGAATGAAAACTTCTAAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAAGCCCGAAGTCGTTGTACCAACACAAATGTTCAAGATATTCTTGATATTAAAACCAAATTGAG
ATGGATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGTAGCATCCAACTATGCATTAATTTTGTATATTTTTAGGGAAATCTGTCA

>TRINITY_DN43452_c2_g1_i2 from sample A9 / Example unspliced isoform:

TGGCACAATCCTATTGACATCTAGAAGCAACTCCAAAAGGTGTTTTAAAGCTTATGGATGTCAAGGGCTTGACAATATATCATGTGAAAAGCCACTTGCAGgtttggtattgagacattgatttcagcctttttttgtgcatttcttggaatttatttgatttgttggtccttttctggaataatttgaacatgttttta
tttgcagAAATATCAAATTGTTAAGTATATGATAGATCAAAGAGAAGGTACAACTGCATTTCATTGTTCCACATTATGATCAATCATATCCTTGTACTTTGGTAGCCAAATAGTTTTTCTATATTAATCTTTGTAGCCTATTTTCCATAGAATTTCTCTTTAGTTAGATATTTCAGGGCAAATCTTGAATGAAAACTTCT
AAGTTGGATTTGCAATAAATTGTCCATCCTTCTAAGCAATAGAATCCCGAAGTCGTTGTACCAGCACAAATGTTCAAGAGATTCTTGATAGTAAAACCAAATTGAGATGGATTCTTGACATTAAAACCAAATTGAGATGGATTTTGTAGATCCTTACTCATTCTTAAATGGTCACCCATTCTAGTAGCATCCAACTATGC
ATTAATTTTGTATATTTTTAGGGAAATCTGTCA