sp|Q8RY25|NU98A_ARATH ----> Nuclear pore complex protein NUP98A

Intron 1 ATTTTGGGTT ... CTCCAGCAAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.96	8	21	10
A2	69.23	8	21	15
A3	77.27	5	28	6
A4	73.33	8	31	13
A5	60	4	10	2
A6	52.81	21	27	20
A7	62.79	8	19	8
A8	57.69	11	16	14
A9	54.55	20	24	24
A10	54.55	10	14	10

>TRINITY_DN107543_c1_g1_i6 from sample A2 / Example spliced isoform

AAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCTGCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTGTATTTGGATCTACCATGACAC
AAGCATTTGGTACCACAACCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAACAAGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCA
GCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTTGCATTCTGATATCAATAGTTATGTTGGGGACGTGCCTTCCCAACCC

>TRINITY_DN107543_c1_g1_i1 from sample A2 / Example unspliced isoform:

AAGATGGGAGGATTATCAATTGGGTGACAAAGGAGCATCTGCATTTGGAGCGTTTGGATCACGAACTCTTGGTCAATCAAATCCTTCAGGAAGTACTTTTGGTCAGAATCAAGCATCTTTTGGTAATCAGCCTTTTGGTGCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTGTATTTGGATCTACCATGACAC
AAGCATTTGGTACCACAACCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAACattttgggtttcccgtactccaactgttggggcttcgagtactcctccatttagttttggaagcaccgtcactttgggtcagccggttgcggcatttggtgcagcatctactccagcaacAAGTGTG
CCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCAGAGTTT
GCATTCTG

Intron 2 GTACTAGTCA ... TAAATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.69	69	18	0
A2	37.25	32	19	2
A3	23.21	43	13	3
A4	50	12	12	10
A5	12.5	21	3	0
A6	12.5	119	17	0
A7	26.47	50	18	4
A8	16.67	65	13	0
A9	12.35	71	10	0
A10	20.37	86	22	2

>TRINITY_DN107543_c1_g1_i2 from sample A2 / Example spliced isoform

TTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTAT
TTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCT
ACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGA
GGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGGAGGCCTAATCCCTGCAAGACAACAACCTACAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGTCAAACACCACCTGCCTTTGGAACAT
CTACATTCGGATTATACGGATTACCAAGTCTTGGTCAATCAAGTCCTTTTAGAAGTACTTTTGGTCAGACACAACCAGCGTCTGGGAATCTCCCTTTTGGTGCAATCAGTCAACCTTCTTCCGGTGCAACTAGCACACCTGCATTTCTATCCACTTTGACACCAGCGTTTGGTGCCACAACCTCTGCATTGGGTGCAACA
AGTGTGCCTGCCTTTGGTGCTTTTAGTTCTCCAGTGTTTGGGATTTCCAGTACTCCAGCCATTGGAACGTTAAATAATCCTCCATTTGGTTTTGGAATCACCGTTGCTTTTGGTCAACTCGTTCCAGCATTTGGCACAGCATCAATGCCATCATTTGGGAACAGCAAAATGTTTAGATGCACTTCATCTCCTTTTGGTCA
GAGTTTGCATTCTGGTGAGCATATTTTCTTCAAGCCC

>TRINITY_DN107543_c1_g1_i3 from sample A2 / Example unspliced isoform:

TTCATCTCCTTTTGGTCAGAGTTCGGCTTTTGGGGCATCTGCATTTGGACAAAAAAATGCATTTGGAGCGTTTGGATCACAAACTCTTGGTCAATTAAGCCCTTCAAGAAGTACTTTTGGTCAGAAGCAAGCAACTTTTGGTAATCAGCCTTTTGGTTCAATCAGTCAACCTGCTTCTGGTGCAACTAGCACACCTTTAT
TTGGATCTACCATGACACCAGCATTTGGTACCAGAAGCTCTGCATTGGGTGCAACAAGTGGGGCTGCCTTTGGTGCTTCTAGTACTCCAGCATTTTGGATTTCCAGTACCCCAACTGTTGGGGCTTCAAGTACTCCTCCATTTACTTTTGGAAGCACTGTCACTTTGGGTCAACCAGTTACAGCATTTGGTGCAACATCT
ACTCCAGCATTTGGGAACGACACACCATTCGGAAGCACTTCATCTCCCTTTGGTCAGAGTTTGTCTTTTGGAGCTCAGTTTGCAATTCCAACATTTGGAATCCCTGAATTTGGACAAACATCCTTTGTGGGACAGCATGGAGGTAGTAGAGTGACACTGTATACAAGTACGAGTGAGACAGAGGGTGCTAGTTATGGCGA
GGCACCTGTGAAACTTATTTCTATATCTTCTATGCCACAATACAAGGTAAAAAGTCATGAAGAATTAAGATGGGAGGATTATGCTGTGGGAGATAAAGgtactagtcaattttttcattgttagtgttattgtaatctgcaaaattatgtctgttttcgcattggtcttgttcttgttgttcatttatgcagtaattact
attagactgatgaagttgtaaatttcagGAGGCCTAATCCCTGCAAGACAACAACCTACAGGGGAAAATATGTTTTCTAAGCCACTACAGTCAAATTCCTTTGGT