sp|F4J6F6|IREH1_ARATH ----> Probable serine/threonine protein kinase IREH1


Intron 1 GTGCGCTTTT ... AGAAATTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A161.29244234
A260.82193029
A366.4214637
A466.04183733
A561.9121920
A667.74102319
A775175448
A861.19132120
A961.9162725
A1058.7193123



>TRINITY_DN109493_c0_g3_i1 from sample A4 / Example spliced isoform
GTAAAATATTTCCATTGGTAGGTAGGAGGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGATCTGGGATATATAT
GGAAATGCATACAATGTGTATATGTTAGATCCAGGTATTCCTCTCTTTTCTTTGTGTTGATTTCTTCTTTTATTCGCCACTCTTCGTCATTTCTCTAGCTGAATTTCAGCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAGATAAGAATCTGTGG
CAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGGAATAGTGGGGGTTA
TCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGCTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAAGGGGCAATTGGCAA
AGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACGAGCTGAGGAAAAGA
GCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCCAGGATGGGCTGCAA
GCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGTTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGATCCCTAGGTGCAAG
TTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTCATGGGGTTCACCAG
GATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTCGACCTTTTCCGTCT
TGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGAGTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTAGCTCGGCAATGTGA
TATGATGTCACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGGCAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACAAGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATATTTCGAGATTTCATC
AACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTCGGCCTTCTGAAACA
GATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTAAATGCCAAAATTCT
GGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCGGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTACAATTGCTGATAGAT
GTGACCTAAAGGGTTTAACTGTAGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATTCGTCTCGTAGAGGC
TCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTGCTAGCAGACAAGAC
TAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCGGATAGAAAGGTTGC
TTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGCCCATCAGCCGAGGG
GCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTT
CTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAATTTGTTGATTGCCCATGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATG
TGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGGGAACTGGGCATGCCGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAGACTATATTTGATA
ATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTGACCGAGGATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCA
ACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTTTGAAGACATTAGTGATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGT
GAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATTCGCCGAAAGGTTCTGATTCTCATTCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTATTCGATGTACAATA
TGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTA
TACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGC
CAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGTTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACTGT
AGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAAACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAACA
AGTGTGTTGAATCATAAGAGTACTCAGC


>TRINITY_DN109493_c0_g3_i3 from sample A4 / Example unspliced isoform:
GTAAAATATTTCCATTGGTAGGTAGGAGGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGATCTGGGATATATAT
GGAAATGCATACAATGTGTATATGTTAGATCCAGGTATTCCTCTCTTTTCTTTGTGTTGATTTCTTCTTTTATTCGCCACTCTTCGTCATTTCTCTAGCTGAATTTCAGCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAGATAAGAATCTGTGG
CAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGGAATAGTGGGGGTTA
TCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGCTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAAGGGGCAATTGGCAA
AGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACGAGCTGAGGAAAAGA
GCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCCAGGATGGGCTGCAA
GCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGTTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGATCCCTAGGTGCAAG
TTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTCATGGGGTTCACCAG
GATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTCGACCTTTTCCGTCT
TGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGAGTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTAGCTCGGCAATGTGA
TATGATGTCACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGGCAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACAAGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATATTTCGAGATTTCATC
AACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTCGGCCTTCTGAAACA
GATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTAAATGCCAAAATTCT
GGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCGGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTACAATTGCTGATAGAT
GTGACCTAAAGGGTTTAACTGTAGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATTCGTCTCGTAGAGGC
TCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTGCTAGCAGACAAGAC
TAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCGGATAGAAAGGTTGC
TTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGCCCATCAGCCGAGGG
GCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGgtgcgctttttctattcatttacatgtagagataacctgtatcttgt
aatggagtacttaaatggaggcgatctttattcattgctgagaaatttag
GCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAATTTGTTGATTGCCCATGATGGCCATATTAAGCTGACAGATTTTG
GACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGGGAACTGGGCATGCC
GAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAGACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTGACCGAGGATCCCAACCAGAG
ACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTTTGAAGACATTAGTG
ATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATTCGCCGAAAGGTTCT
GATTCTCATTCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTATTCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGG
TCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTG
GACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGTTGAGG
TACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACTGTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAA
ACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAACAAGTGTGTTGAATCATAAGAGTACTCAGC




Intron 2 GTAAGAGATA ... CCCTCTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A118.644815.311
A219.61419.110
A324.564310.914
A427.66342.913
A516.310.33.42
A624.8210321.134
A722.9312126.636
A818.3210722.324
A9208012.620
A1020.246722.117



>TRINITY_DN133672_c0_g2_i3 from sample A1 / Example spliced isoform
GGCAAGTGTGGACGGTAAAATATTTCCATTGGTAGGTAGGAAGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGA
TCTGGGATATATATGGAAATGCATACAATGTGTATATGTTAGATCCAGGTATTCCTCTCTTTTCTTTGTGTTGATTTCTTCTTTTATTCGCCACTCTTCGTCATTTCTCTAGCTGAATTTCAGCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCAGACAAGGGTTCGAAG
ATAAGAATCTGTGGCAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGG
AATAGTGGGGGTTATCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGCTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAA
GGGGCAATTGGCAAAGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACG
AGCTGAGGAAAAGAGCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCC
AGGATGGGCTGCAAGCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGA
TCCCTAGGTGCAAGCTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTC
ATGGGGTTCACCAGGATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTC
GACCTTTTCCGTCTTGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGACTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTA
GCTCGGCAATGTGATATGATGTCACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGACAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACACGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATAT
TTCGAGATTTCATCAACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTC
GGCCTTCTGAAACAGATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTA
AATGCCAAAATTCTGGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCGGAGGAGACCTATGCAATGATCTGTCGAATATGTGAGGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTAC
AATTGCTGATAGATGTGACCTAAAGGGTTTAACTGTCGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATT
CGTCTCGTAGAGGCTCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTA
CTAGCAGACAAGACTAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCG
GATAGAAAGGTTGCTTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGC
CCATCAGCCGAGGGGCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGCAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGTGCGCTTTTTCTATTCATTTACATGTAGAGAT
AACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAACTTGTTGATTGCCCATGATGGCCATATTAA
GCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGG
GAACTGGGCATGCCGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAGACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTCACCGAG
GATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTT
TGAAGACATTAGTGATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATT
CGCCGAAAGGTTCTGATTCTCATTCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTATTCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATG
CATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCAT
GTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATT
GTGAATTGCTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACTGTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCC
TGTTATGGTAGTAAACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAACAAGTGTGTTGAATCATAAGAGTACTCAGCTTGAC


>TRINITY_DN133672_c0_g2_i5 from sample A1 / Example unspliced isoform:
TATTCGATGTACAATATGTAAATgtaagagatataataataagtctatgcgatatctagtaagcagttctactctgaggctgaatcatacattcatgttatttcacctgataattgtttttgttctttggttgccttggccctctacagATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGA
ATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGC
ACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAA
GAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGCTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACTGTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGT
GGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAAACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAACAAGTGTGTTGAATCATAAGAGTACTCAGCTTGAC




Intron 3 GTGAGAACTG ... TTGCTTTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A116.834298
A218.9230122
A32046716
A420.4337415
A529.631988
A616.362327
A716.9254517
A8252168
A923.9427611
A1016.223175



>TRINITY_DN111045_c0_g1_i3 from sample A5 / Example spliced isoform
GGCAAGTGTGGACGGTAAAATATTTCCATTGGTAGGTAGGAGGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGA
TCTGGGATATATATGGAAATGCATACAATGTGTATATGTTAGATCCAGGTATTCCTCTCTTTTCTTTGTGTTGATTTCTTCTTTTATTCGCCACTCTTCGTCATTTCTCTAGCTGAATTTCAGCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAG
ATAAGAATCTGTGGCAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGG
AATAGTGGGGGTTATCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCAAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGGTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAA
GGGGCAATTGGCAAAGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACG
AGCTGAGGAAAAGAGCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGTAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCC
AGGATGGGCTGCAAGCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGA
TCCCTAGGTGCAAGCTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTC
ATGGGGTTCACCAGGATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTC
GACCTTTTCCGTCTTGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGAGTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTA
GCTCGGCAATGTGATATGATGTCACCTGGTGAGTTTTGGTTGCAATGCGAGGGAATAGTGCAGGATTTAGATGATCGACGACAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACAAGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATAT
TTCGAGATTTCATCAACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTC
GGCCTTCTGAAACAGATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTA
AATGCCAAAAGTCTGGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCAGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTAC
AATTGCTGATAGATGTGACCTAAAGGGTTTAACTGTAGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATT
CGTCTCGTAGAGGCTCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTA
CTAGCAGACAAGACTAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCG
GATAGAAAGGTTGCTTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGC
CCATCAGCCGAGGGGCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGTGCGCTTTTTCTATTCATTTACATGTAGAGAT
AACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAACTTGTTGATTGCCCATGATGGCCATATTAA
GCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGG
GAACTGGGCATGCCGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCAGAACATCCACAGACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTCACCGAG
GATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTT
TGAAGACATTAGTGATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATT
CGCCGAAAGGTTCTGATTCTCATTCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTATTCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATG
CATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCAT
GTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATT
GTGAATTGTTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTG


>TRINITY_DN111045_c0_g1_i6 from sample A5 / Example unspliced isoform:
CATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTAAATGCCAAAAGTCTGGAACATCCTCTTC
CAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCAGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTACAATTGCTGATAGATGTGACCTAAAGGGT
TTAACTGTAGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATTCGTCTCGTAGAGGCTCTGAAGACATGCT
AGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTACTAGCAGACAAGACTAGTTTTTGTGAGT
ATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCGGATAGAAAGGTTGCTTCGGGAAAAGTAT
TTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGCCCATCAGCCGAGGGGCTTTTGGGCGAGT
GTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGgtgagaactggtcttcattattgtgccttccaatgagctatataaattttagtgtctggtg
tatactctaatttgagttgtattagatcatttattcttgaattgcaatgtgcattgcttttag
GTGCGCTTTTTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGA
AGTTGTAAGCATCTATACGCTTCATTTGTTTCATATTTTTGACATATTCTCC




Intron 4 GTATTCCTCT ... TGAATTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A166.27142134
A261.11284048
A359.66243833
A462.67142225
A564.29101620
A6-1000
A772.733610
A833.33220
A966.67244
A1052.639128



>TRINITY_DN48258_c0_g1_i1 from sample A7 / Example spliced isoform
TTCCATTGGGAGGTAGGAGGAGGAGGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGATCTGGGATATATATGGAAATGCA
TACAATGTGTATATGTTAGATCCAGCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAGATAAGAATCTGTGGCAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTG
TAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGGAATAGTGGGGGTTATCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGC
AGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGGTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAAGGGGCAATTGGCAAAGGTGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGA
TGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACGAGCTGAGGAAAAGAGCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCT
TGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCCAGGATGGGCTGCAAGCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCT
TGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGATCCCTAGGTGCAAGTTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGG
CATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTCATGGGGTTCACCAGGATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTC
CCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTCGACCTTTTCCGTCTTGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGACTGAGGTTTGACAAAGCAAAAGAAGAAGTAAAC
TCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTAGCTCGGCAATGTGATATGATGTCACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGACAAGAGCTTCCTATGGG
TGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACACGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATATTTCGAGATTTCATCAACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGG
AATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTCGGCCTTCTGAAACAGATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACC
CAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTAAATGCCAAAAGTCTGGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGG
TGATCAACAAAACCTCGCGGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTACAATTGCTGATAGATGTGACCTAAAGGGTTTAACTGTCGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAA
AGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATTCGTCTCGTAGAGGCTCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGA
TTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTGCTAGCAGACAAGACTAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGA
TGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCGGATAGAAAGGTTGCTTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAG
ATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGCCCATCAGCCGAGGGGCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATT
CGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGTGCGCTTTTTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATAT
AGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAATTTGTTGATTGCCCATGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTG
AAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGGGAACTGGGCATGCCGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAG
ACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTGACCGAGGATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGC
AGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTTTGAAGACATTAGTGATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATA
ATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATTCGCCGAAAGGTTCTGATTCTCATTCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTAT
TCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTA
AAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAA
AATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGCTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTAC
TTGGTAACACTGTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAAACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGG
TTCTATTTGAACAAGTGTGTTGAATCATAAGAGTACTCAGCTTGACTCCTTTATTGCTAATAGAAATATTGATGTCGAGATACCTACTTTTACCATTTAGAAAAATAGCATATAGATCACATTGAAGTGCATAACAGAATAAAATTATGAGCTTTTTGGCAGACTCAACGTGCCACTGAATATTGCAGAAGTGCTACTAC
AAACTGATCCGTTCACAAGAGTGAGATACAGGGAAAATGAGATTTCAAACTGTGAACACTTTTAAGATATTATTCATGACACCGG


>TRINITY_DN48258_c0_g1_i2 from sample A7 / Example unspliced isoform:
TTCCATTGGGAGGTAGGAGGAGGAGGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCAGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGATCTGGGATATATATGGAAATGCA
TACAATGTGTATATGTTAGATCCAGgtattcctctcttttctttgtgttgatttcttcttttattcgccactcttcgtcatttctctagctgaatttcagCTTGTGGGGGGCACTGGCATCGGAAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAGATAAGAATCTGTGGCAGCGAGGG
TTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGGAATAGTGGGGGTTATCGGCTTTG
TCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGGTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAAGGGGCAATTGGCAAAGGTGAAAG
TAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACGAGCTGAGGAAAAGAGCCCAAGCC
CTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCCAGGATGGGCTGCAAGCAAAAGGT
TCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGATCCCTAGGTGCAAGTTCAAGGAA
GGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTCATGGGGTTCACCAGGATGCAGCA
GTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTCGACCTTTTCCGTCTTGGAAACCA
CGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGACTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTAGCTCGGCAATGTGATATGATGTC
ACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGACAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACACGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATATTTCGAGATTTCATCAACAGGGTA
CAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTCGGCCTTCTGAAACAGATACTACA
AAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTAAATGCCAAAAGTCTGGAACATCC
TCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCGGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTACAATTGCTGATAGATGTGACCTAA
AGGGTTTAACTGTCGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATTCGTCTCGTAGAGGCTCTGAAGAC
ATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTGCTAGCAGACAAGACTAGTTTTTG
TGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCGGATAGAAAGGTTGCTTCGGGAAA
AGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGCCCATCAGCCGAGGGGCTTTTGGG
CGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGTAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGTGCGCTTTTTCTATTCATTTACATGTAGAGATAACCTGTATCTTGTAATGGAGTA
CTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAATTTGTTGATTGCCCATGATGGCCATATTAAGCTGACAGATTTTGGACTCTCAA
AAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGGGAACTGGGCATGCCGAAACTGCA
GATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAGACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTGACCGAGGATCCCAACCAGAGACTTGGGGC
TAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTTTGAAGACATTAGTGATTGTGACA
GCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATTCGCCGAAAGGTTCTGATTCTCAT
TCCTCAATTGTTTAGATGTTTACCATCTGGTAAACTGAAGGAGATCATTTGCAAGTCGTCAGAACCTGTGGTTATTCGATGTACAATATGTAAATATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGGTCTAGGCAC
AGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAACTATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTGGACTTTTAG
TTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAAGCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGCTGAGGTACTGAGCT
TGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACTGTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAAACAGTTTAT
CTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAACAAGTGTGTTGAATCATAAGAGTACTCAGCTTGACTCCTTTATTGCTAATAGAAATATTGATGTCGAGATACCTACTTTTACCATTTAGAAAAATAGCATATAGATCACATTGA
AGTGCATAACAGAATAAAATTATGAGCTTTTTGGCAGACTCAACGTGCCACTGAATATTGCAGAAGTGCTACTACAAACTGATCCGTTCACAAGAGTGAGATACAGGGAAAATGAGATTTCAAACTGTGAACACTTTTAAGATATTATTCATGACACCGG




Intron 5 GTATTCCTCT ... GCATCGGAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A168.89142141
A262.24274049
A360.33243835
A48062226
A575.3861620.8
A633.33202
A773.913611
A833.33220
A962.5346
A1058.827128



>TRINITY_DN122591_c0_g3_i2 from sample A2 / Example spliced isoform
GGCAAGTGTGGACGGTAAAATATTTCCATTGGTAGGTAGGAGGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCGGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGA
TCTGGGATATATATGGAAATGCATACAATGTGTATATGTTAGATCCAGCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAGATAAGAATCTGTGGCAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAA
ATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGGAATAGTGGGGGTTATCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGT
GGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGCTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAAGGGGCAATTGGCAAAGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGC
AGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACGAGCTGAGGAAAAGAGCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGG
CATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCCAGGATGGGCTGCAAGCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCTTGC
TCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGATCCCTAGGTGCAAGTTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCAT
GTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGGTAGATATATGATAATCCTGGAAACACTATGAAAAACAATCGATTTTTTTGAAATGACTTTTTTGCATAAAACTGCCGTGAAACTATTTCTGTCTCATCTTTGGATCATCTAAGTCT
AGCTGGCAAGCAAGATTTAAGGACAAGTTGATAGATACACGTAGAGAAGAGTTAGAATCTCCAATACTATAACCGAATTCTTGCAATTTCAATCTATATGGGAAACAAGTG


>TRINITY_DN122591_c0_g3_i4 from sample A2 / Example unspliced isoform:
GGCAAGTGTGGACGGTAAAATATTTCCATTGGTAGGTAGGAGGAGGACGCGGACTAGTAGAAAATTTATCGGAAGATTTGAAAAATATATGTATTTACTTGGTCGGTTGGCCTAAATGCCCCGTCCCGCTGCTGCTGACGATTTTTCGGATCTCGATTTCCTCATTCAGCACCATATATTTCATTTCATTTGTTCTCAGA
TCTGGGATATATATGGAAATGCATACAATGTGTATATGTTAGATCCAGgtattcctctcttttctttgtgttgatttcttcttttattcgccactcttcgtcatttctctagctgaatttcagcttgtggggggcactggcatcggaagCTGGGCTTGTTATTGTTGTTGCCCCGAGGGGTTTCATACAAGGGTTCGAAG
ATAAGAATCTGTGGCAGCGAGGGTTTCGACGGTGGATGTATAGAGAGGTTCGGCAAAGGCGCCAAGGAATGATTCATTTTCATGCCAGGGTTTGTGTGTAAATGCAGCCAAAGATGTCTTTTATTCTCCTTTTTTTGCACTTTCAGACGTGCCAATGGTGAACTTGAAGTGGGCAGAGCTCCAATTGTCTTTGGTATTGG
AATAGTGGGGGTTATCGGCTTTGTCAGGGTTTGATTCAAAGATGGTTTTCAAAGGTAGGTTTTTTGGGAGTCAGAAGCAGTCCAAACAGGAAGGGGGCAGTGGACGGAATGGCAGTCCGGGTAGTGGCAGCACTGCTGGATCGAGTGGAGGCAGTGGGAATAGGAGCGCAGGCATTATTAGCAAGACTGAGAAGAAGAAA
GGGGCAATTGGCAAAGGCGAAAGTAAGAAGGAAAGCGATCTTGTTGGGCAGGACCGGGTTAAGGACAGCAGGGTGAAGAAGGAAATAGCTGGAAAGGATGCAGCTGCCAAATTGAAGGAGGCTGAGAGTCCTCAGGCGAAGCATGGCATTCACAAGAAGGACACTTCGACGAAGCTGAAGAAGGTTCCAGCAGTAGAACG
AGCTGAGGAAAAGAGCCCAAGCCCTGGGGGATCTACAAAAGATGTGGCTGTCAATGGGGCAGACGTTGATCGGTCTTCGAACCCGGCCTCGCCCATCTTGGCATCCTCCCTTGGTCTCAACCGCATAAAGACAAGATCAGGTCCTCTACCTCAAGAGAACTATAATTTTGATCATTTTCGGAGGTTTGTACCTAATTTCC
AGGATGGGCTGCAAGCAAAAGGTTCGACTCTGGGTGCCAGTAAACTGTCCAGAACAGAGATTTGCTCCACTTCAACATTCACCCCAATATCGACTGCTTGCTCAGCAGTACCTGTTGGAGGCAAATCTTCTAAAAATGTGAATTCTTGTCACAGCAATTCATGTGGCTCAGGTTCCGTGTCTGCAAATAATGACAGGGGA
TCCCTAGGTGCAAGTTCAAGGAAGGAATCCCAGAGCAGAACTGCACAGGATAACATGTCATGCAGCTGTTGGGTTGACAAAGATAGCAATTTCAATGGCATGTCTACTAGTTGCCAATCCATGGATGGCAGCCCAGTTGTGCAAGGAAGCTTTCGGTTTCAGCCTAGCAGCCTTCTACAGAATGAAACAAAAGCTTCCTC
ATGGGGTTCACCAGGATGCAGCAGTAGCACAGATACACATATTCAGGAAACAGAGGCTCCATGTGGCACTTCAGATGCTGCAAAAGAAACAGAGTCTCCCCGTTTTCAAGCCTTGCTTCGGGTTACAAGAGGTCCTTGGAAGAATAAACTTACCAATGACATTAAAAGTTTCTCTCATGAATTAGATCCTAGAGGAGTTC
GACCTTTTCCGTCTTGGAAACCACGCAATTTTAACAATCTACAGGAAGTTTTGGGAGCTATACGAGTGAGGTTTGACAAAGCAAAAGAAGAAGTAAACTCTGATTTGGCAATTTTTGCGGGAGACTTGGTTGAAATACTCGAGAAGACTTCAGAAGCTCATCCCGAATGGAAAGAGAGTTTGGAAGATCTGTTGGTTTTA
GCTCGGCAATGTGATATGATGTCACCTGGTGAGTTTTGGTTGCAATGTGAGGGAATAGTGCAGGATTTAGATGATCGACGACAAGAGCTTCCTATGGGTGTGCTGAAGCAACTTCATACACGCATGCTTTTCATCCTTACAAGGTGTACACGATTATTGCAGTTTCATAAGGAACATGGGTTAGATGAGGATGGGAATAT
TTCGAGATTTCATCAACAGGGTACAGGGGCATCACACGTGGAGAAACCGCTATCTACTGCAACAAATAAAAATGATAAGACTCCAACTACTGGAAAGGAATTTAAGCAGAGTCTCACTCCTCGCTTTTTTAGTGAAGAACAAAAATTTTATAATTGGGAGGGAAGAGATAAACCCATCCCTCCCTTCAGTACTGCTGCTC
GGCCTTCTGAAACAGATACTACAAAAAACATTGATCCATTTACAACAAGGGATCGCCTTTCCTCTTGGAAGAGGCTTCCCTCTGCAGGTGATACAACCCAGAAGAGAAACACTGCTGTGAATGAAATATCTTCTGAAGTCAAGCCCGACTCTATTAAAATGTCAGATAAACGACAAACATTGTCAGATGGAAATCTTGTA
AATGCCAAAAGTCTGGAACATCCTCTTCCAAAAGAGAGTTCCAGTCAATCTTCAGTGTCTTCTAAACATCAACATAGAATTTCCTGGGGATATTGGGGTGATCAACAAAACCTCGCAGAGGAGACCTATGCAATGATCTGTCGAATATGTGAAGAAGAGGTGCCCACCTCTCACCTGGAAGAGCACTTACGTATTTGTAC
AATTGCTGATAGATGTGACCTAAAGGGTTTAACTGTAGATGAACGCCTGAGAAGGATTGCAGAATCTCTTGAGAAGATAATGGAGTTATACACTCCAAAGAGTTCTCAGGCAACGGGAGGAGGAAGTCCTGATGTTGGAAAAGCATGCAATATGAGTGTAACTGAAGACTCTGAAGGACCTTCTCCTAAACTTAGTGATT
CGTCTCGTAGAGGCTCTGAAGACATGCTAGATTACCTTCCTGAAGTTGATGGCATGGATGAGTCAAGGGGTTTGGCAACCATGTCATGTAAAACTCGATTTGGGCCAAAATCTGAACAGGGAATGGCAACATCATCTGCTGGTAGCATGACGCCTCGGTCTCCACTCACTACTCCAAGGACCTGTCAGATTGACATATTG
CTAGCAGACAAGACTAGTTTTTGTGAGTATGAGGATCTGCCCCAGATAAATGAACTTGTAGATATTGCTCGCTGTGTAGCCAATGCAAACTGGAATGATGAAGGAGCATTGGAGTATTTGGTTTCCTGTCTGGAAGATCTTCGAGATGTCCTTCAGCACTGTAAAGTTGAAGCTCTTACAGTTGACACTTTTGGGAAGCG
GATAGAAAGGTTGCTTCGGGAAAAGTATTTGCATGTTTGTGAATTGGTACAACCAGAAGAAGAGAAGCTAGATATGTCCAGTAGCATTGTGGATGAAGATGGCCCAATGGAAGATGATGTGGTTCGGAGTCTACGGGCTAGTCCTGTTCATCCTGCTTCCAAAGACAGGACTTCTATAGATGATTTTGAGATTTTGAAGC
CCATCAGCCGAGGGGCTTTTGGGCGAGTGTTTCTAGCAAGGAAAAGAACCACAGGAGATCTATTTGCCATAAAGGTTCTCAGAAAGGCAGACATGATTCGCAAGAATGCAGTGGAAAGTATTTTAGCTGAGCGTAACATTTTGATATCAGTCCGCAATCCTTTTGTGGTGCGCTTTTTCTATTCATTTACATGTAGAGAT
AACCTGTATCTTGTAATGGAGTACTTAAATGGAGGCGATCTTTATTCATTGCTGAGAAATTTAGGCTGCCTAGACGAAGACATGGCACGCGTTTATATAGCTGAAGTTGTTCTTGCATTGGAGTACTTGCATACATTGCATGTAGTGCATAGAGATCTGAAGCCCGACAACTTGTTGATTGCCCATGATGGCCATATTAA
GCTGACAGATTTTGGACTCTCAAAAGTTGGTCTTATAAACAGCACTGATGACTTGTCTGGACCAGCAGTGAGTGGTACAATGCTTCTAGGAGAGGGTGAAGATTCATTATGTGCCTCTGAGCAACCTGACCAAAGAGAGAGACGTCAAAAGCGCTCAGCGGTTGGAACCCCTGATTACTTGGCACCAGAGATCCTCTTGG
GAACTGGGCATGCCGAAACTGCAGATTGGTGGTCAGTTGGTGTCATTCTTTTTGAACTGCTCACAGGCATTCCACCTTTTAATGCGGAACATCCACAGACTATATTTGATAATATTCTGAATTGCAAAATACCCTGGCCCGGTGTCCCTGAGGAGATGTCATATGAAGCAATGGACTTAATTGATAAGCTTCTGACCGAG
GATCCCAACCAGAGACTTGGGGCTAAAGGAGCAGCAGAGGTTAAGAGGCACCCATTTTTTAAGGACATTAATTGGGACACACTACAAAGGCAGAAGGCAGCTTTCGTTCCAACTTCAGATGGGGCACTGGATACAAGTTATTTCACTTCTCGATACATGTGGAACTCATCAGAAGGGAATGTTTATTCAGCTAACAATTT
TGAAGACATTAGTGATTGTGACAGCAGTAGCGGGAGCAGTAGTTCTTTCATCAATGGCCCTGATGAAGTGATAGATGAAGGCTTGGCAAAGATTGATAATACACCATCTGTGAATTACTCCTTCAGCAATTTCTCATTTAAGAACTTGTCACAGCTGGCATCTATCAATTATGATTTGCTGACGATAAGTGGGAAGGATT
CTCCGAAAGATTTGTTCCATGAATGAGAGCATCAGTAGTAAGAAGTCATGGAGCCATAGAATGGCCCTATAATGCCAACTGCAAGATCATGCATGAGGAACTTGGTCTAGGCACAGCTATCTTGGAGTTGTATAGTCGTTGCAAATCAATCATCTTATGCTATTTTATGTGCCATGTAATGGCTTTGTAAAGTTGCAAAC
TATACCGAGTGTCCCATTTTCCTTGCTTTAAAGAACAGGCAAAAACTGATCAGTCTGGGCACAATGTCCTGGCATGCCAACTGGCATTCATGTGTACTTATTTTGGACTTTTAGTTGTTCAAGTATGTCTATATACATGCCTGTTCTGCTGTTGGGAACTTTTTGTTGCTTTGAGTTGTGTGTATGAAAAATTTATTCAA
GCCAAAACCAAAATTACTTGTGGCTGAAGATGGCAATATTTTATCTTATGCAATGCATAAGAAGAGAGTTTGAATGAAAAGGCAAGCCATTGTGAATTGTTGAGGTACTGAGCTTGAAGTAAACACAAAAAAGAGGCTTGTTTGTGTTTGTTTCATTCAAAATCTATGAGGATGTGGTTGATGCCCTACTTGGTAACACT
GTAGGTTATTCTGAGTCAGTCTTCTCTTTGGCTGATAATGGCTTACTGTAAGGTGTATGTGGTATTCTTTTATCCCCAAGTCCACTATGCCTGTTATGGTAGTAAACAGTTTATCTTGGGTGCATTTTTTACCTTGGTGAAAATTGGAACCATTATGCATCTTAACGTTTTAATATGACAGGCACTAGGTTCTATTTGAA
CAAGTGTGTTGAATCATAAGAGTACTCAGCTTGACTCCTTTATTGCTAATAGAAATATTGATGTCG