sp|Q7X9I4|ERO2_ARATH ----> Endoplasmic reticulum oxidoreductin-2

Intron 1 GTAAAACCAG ... CAAATGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	3	2	6
A2	45.83	13	7	11
A3	45.71	19	2	16
A4	47.62	11	0	10
A5	38.46	8	0	5
A6	0	6	0	0
A7	30.56	25	0	11
A8	20	8	0	2
A9	35	13	0	7
A10	25	9	0	3

>TRINITY_DN109502_c0_g1_i1 from sample A2 / Example spliced isoform

CAGAAATGTCGCCCGTTGTCTGAAATCGTTTTTGTGTTTTTGTTTGTTGAAAGTTCGATCGCCAAGAGGGAGATAGGACTCTCCCTGTCCCATTATATTTCTGCTCACCAGTCTGCCCAATTTCAATCTGATAAAGTGTGTTTTAACTCAGTGTATGCGTTTACCAATAGAGAGGATTCATTAGCTCTAGAAAAGCGAGG
ATCTGGAAGAAGAATACTGCAATCCAACCAAGGCACTGGGGTGCCTGATTATTATTGAGTAGATGGGAAATTTAGATTTGGAGAAGAAGAGAAATAGGAATGGATGGGGATGGAAGTCATGGGCATCCGTTGCTTTAATTGGGATTTTAGCTGTCGCTGTTGCCGCTGCATCATCATCAGGCAGAGGAACTGTGATTTCT
TTATTTGGCTTCTCCAGCAAGCTCTGCACTTGTGGGAGTGAAAATAAACTTACTGGACTTGTGGAAGATTGCTGTTGTGATTATGAAACTGTGGACACTCTTAACAATGAGGTGTTACACCCTTCACTTCAAGAAGTTGTGAAAACTCCTTTCTTCCGATATTTTAAGGCAAGGCTTTGGTGTGACTGTCCATTCTGGCC
TGATGATGGTATGTGCCGTCTTCGAGATTGTAGTGTGTGTGAATGTCCTGCTCACGAGTTTCCTGAATCATTCAAGAGACCAAATAGTCAGCTGTCCAATGATAACCTAATATGTCAAGAGGGAAAGCCACAGGCTACAGTTGATCGAACTCTAGATAGTAAGGCATTTACCGGTTGGATGGAAACAGACAACCCATGGA
CTTATGACGATGAGACTGACAATGCTGAAATGACTTATGTAAATCTTCAACTAAATCCAGAACGCTACACAGGCTACATTGGTCCTTCAGCTCGGAGAATATGGGACTCTATATACAACGAGCATTGTCTCAAAGATGTGCCTGGAGATTCCTCTCCAGAGAGGCGAGTTTTCTACAAGCTTATTTCAGGGTTGCATTCT
TCTATTTCAGTTCACATTGCAGCAGAATACCTACTTGATGAGGGAAATGATCTGTGGGGGCCAAATCCAATTTTGCTTTATGAACGGGTGTTGAAATATCCAGAGCGAGTCAGAAATTTGTACTTCACATTTCTCTTTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAA
TCCATTAGAGGATCAACATACACAGTCATTGATGATTCAGCTTGTAAATAACAAGCAATTACAAGCAGCGTGCCCAATTCCTTTTGATGAAGCCAAATTATGGAAGGGCCAGAATGTACATGACTTGAAAAGGCAAATCCAGCTGCAGTTCAGAAATATAAGTGCATTGATGGATTGTGTTGGCTGTGAAAAATGCCGGC
TTTGGG

>TRINITY_DN109502_c0_g1_i2 from sample A2 / Example unspliced isoform:

CCCAATTTCAATCTGATAAAgtaaaaccagattttgattttgatctaacacagttattttgttttatcttcttataaatactatttgtagtaggtggaaattaagttcaattccttttgggttcaagtaatgagccgtgtaatgctggcatatcatagagtctgcccaagttgctcatgttttgcaatgcaaatggcagG
TGTGTTTTAACTCAGTGTATGCGTTTACCAATAGAGAGGATTCATTAGCTCTAGAAAAGCGAGGATCTGGAAGAAGAATACTGCAATCCAACCAAGGCACTGGGGTGCCTGATTATTATTGAGTAGATGGGAAATTTAGATTTGGAGAAGAAGAGAAATAGGAATGGATGGGGATGGAAGTCATGGGCATCCGTTGCTTT
AATTGGGATTTTAGCTGTCGCTGTTGCCGCTGCATCATCATCAGGCAGAGGAACTGTGATTTCTTTATTTGGCTTCTCCAGCAAGCTCTGCACTTGTGGGAGTGAAAATAAACTTACTGGACTTGTGGAAGATTGCTGTTGTGATTATGAAACTGTGGACACTCTTAACAATGAGGTGTTACACCCTTCACTTCAAGAAG
TTGTGAAAACTCCTTTCTTCCGATATTTTAAGGCAAGGCTTTGGTGTGACTGTCCATTCTGGCCTGATGATGGTATGTGCCGTCTTCGAGATTGTAGTGTGTGTGAATGTCCTGCTCACGAGTTTCCTGAATCATTCAAGAGACCAAATAGTCAGCTGTCCAATGATAACCTAATATGTCAAGAGGGAAAGCCACAGGCT
ACAGTTGATCGAACTCTAGATAGTAAGGCATTTACCGGTTGGATGGAAACAGACAACCCATGGACTTATGACGATGAGACTGACAATGCTGAAATGACTTATGTAAATCTTCAACTAAATCCAGAACGCTACACAGGCTACATTGGTCCTTCAGCTCGGAGAATATGGGACTCTATATACAACGAGCATTGTCTCAAAGA
TGTGCCTGGAGATTCCTCTCCAGAGAGGCGAGTTTTCTACAAGCTTATTTCAGGGTTGCATTCTTCTATTTCAGTTCACATTGCAGCAGAATACCTACTTGATGAGGGAAATGATCTGTGGGGGCCAAATCCAATTTTGCTTTATGAACGGGTGTTGAAATATCCAGAGCGAGTCAGAAATTTGTACTTCACATTTCTCT
TTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAATCCATTAGAGGATCAACATACACAGTCATTGATGATTCAGCTTGTAAATAACAAGCAATTACAAGCAGCGTGCCCAATTCCTTTTGATGAAGCCAAATTATGGAAGGGCCAGAATGTACATGACTTGAAAAGGCAA
ATCCAGCTGCAGTTCAGAAATATAAGTGCATTGATGGATTGTGTTGGCTGTGAAAAATGCCGGCTTTGGG

Intron 2 GTAAAACCAG ... CAAATGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	3	4	6
A2	68.75	5	7	11
A3	50	16	2	16
A4	47.62	11	0	10
A5	38.46	8	0	5
A6	0	1	0	0
A7	50	11	0	11
A8	40	3	0	2
A9	50	7	0	7
A10	37.5	5	0	3

>TRINITY_DN114206_c1_g2_i2 from sample A1 / Example spliced isoform

GGACGCTCCCTGTCCCATTATATTTCTGCTCACCAGTCTGCCCAATTTCAATCTGATAAAGTGTGTTTTAACTCAGTGTATGCGTTTACCAATAGAGAGGATTCATTAGCTCTAGAAAAGCGAGGATCTGGAAGAAGAATACTGCAATCCAACCAAGGCACTGGGGTGCCTGATTATTATTGAGTAGATGGGAAATTTAG
ATTTGGAGAAGAAGAGAAATAGGAATGGATGGGGATGGAAGTCATGGGCATCCGTTGCTTTAATTGGGATTTTAGCTGTCGCTGTTGCCGCTGCATCATCATCAGGTAGAGGAACTGTGATTTCTTTATTTGGCTTCTCCAACAAGCTCTGCAGTTGTGGGAGTGAAAATAAACTTACTGGACTTGTGGAAGAT

>TRINITY_DN114206_c1_g2_i1 from sample A1 / Example unspliced isoform:

GGACGCTCCCTGTCCCATTATATTTCTGCTCACCAGTCTGCCCAATTTCAATCTGATAAAgtaaaaccagattttgatttttatctaacacagttattttgttttatcttataaatactatttgtagtaggtggaaattaagttcaattcctttgggttcaagtaatgagccatgtaatgctggcatatcatagagtcta
cccaagttgctcatgttttgcaatgcaaatggcagGTGTGTTTTAACTCAGTGTATGCGTTTACCAATAGAGAGGATTCATTAGCTCTAGAAAAGCGAGGATCTGGAAGAAGAATACTGCAATCCAACCAAGGCACTGGGGTGCCTGATTATTATTGAGTAGATGGGAAATTTAGATTTGGAGAAGAAGAGAAATAGGAA
TGGATGGGGATGGAAGTCATGGGCATCCGTTGCTTTAATTGGGATTTTAGCTGTCGCTGTTGCCGCTGCATCATCATCAGGTAGAGGAACTGTGATTTCTTTATTTGGCTTCTCCAACAAGCTCTGCAGTTGTGGGAGTGAAAATAAACTTACTGGACTTGTGGAAGAT