sp|Q944H5|MTM1_ARATH ----> Mitochondrial carrier protein MTM1
Intron 1 GTGCGGAGGG ... TAATGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.88 | 15.5 | 1 | 70 |
| A2 | 81.9 | 10.5 | 10 | 47 |
| A3 | 85.42 | 13 | 6 | 76 |
| A4 | 84.29 | 12.5 | 6 | 67 |
| A5 | 80.63 | 8 | 6 | 33 |
| A6 | 82.49 | 15.5 | 9 | 73 |
| A7 | 87.4 | 19.8 | 11 | 137 |
| A8 | 76.43 | 23.8 | 1 | 77 |
| A9 | 82.98 | 31 | 4 | 151 |
| A10 | 88.01 | 19.8 | 10 | 145 |
>TRINITY_DN42946_c1_g1_i13 from sample A6 / Example spliced isoformGCGACGGCCCTCGTTTAAGAGCACATATTTAAATGTGCCACCGTACTATATAGTATGCCGTTCAAATCACGCGAAATTGCAAAAGGTATTTAAAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTTGGACGTCGTCAAGGCTCAGATTGGCCAGAAG
ACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCTTGCTATGACATCTTTCGAGATTGGCTTGAAGGATTT
TCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGTTTGCCATTACAGAACTTCCTGCTTGAATTGTTGGAAATTTCATATGATCAGAGTTCTTTAATACACGGTTGGGTATGCAAT
TAGAAGCTAAAAAGCTTTTCAGTTGTAGAAAGTCAAATATTTTTAGTTGATGCACTAGGAAGTGGAAGTCTAGACTGTCTTCAAAGCTCAACGGGATGAATTAGGCTATGACAGGACTACTAATTCTAAACTTCCTATTTGTACAAGTCATAATGCAAGTGATTGTTTTCTTTGAGCAAATATATTGATAGGGATTTTTT
AGATTTTTAGTGATATATTTTAGTCTATGCTTTGTCTCATACTCTTATTTGTATGGTGTGCTTATTATTATTATGGCTTTTGTTTGACATAGCTTTTTAGTTTCCTATTCTCATGGAGTAGTAGCTGAGATTATATCTTTATCTATCTCTATTATTGTATTATGGTTGCGAAGATCTTGTCTCTTAGTTTGTTAAGGTGG
TTGTTTTTTTTAATGTAAAGCTATAAAAGCTTGTATTTGCTTAATAAAA
>TRINITY_DN42946_c1_g1_i9 from sample A6 / Example unspliced isoform:GCGACGGCCCTCGTTTAAGAGCACATATTTAAATGTGCCACCGTACTATATAGTATGCCGTTCAAATCACGCGAAATTGCAAAAGGTATTTAAAGgtgcggagggaaccataaaccaccgtagaaaactgaaattccgtccatcaatggcagactcagagaaggatcctcgtcctttaggtcctaacaattctagtcata
atgcgcagAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTA
TATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCG
TGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATC
CGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCAT
ACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACT
ATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAG
CAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGGGTATTTCATTTTGTTCGCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAGTACCTTGTTGAACAATTCATTC
TATAAATTGTAACAGATTGAAATAAAAAATATGC
Intron 2 GTAAGCAAGT ... GGTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.52 | 59.7 | 7.6 | 10.2 |
| A2 | 19.56 | 31.9 | 4.4 | 7.9 |
| A3 | 12.36 | 52.8 | 3.2 | 7.4 |
| A4 | 8.24 | 49.2 | 5.7 | 4.6 |
| A5 | 12.48 | 19.8 | 2 | 3.1 |
| A6 | 13.87 | 47.8 | 1.3 | 8.3 |
| A7 | 9.96 | 82.3 | 0.8 | 9.8 |
| A8 | 11.42 | 66.6 | 1.6 | 9.3 |
| A9 | 11.08 | 113 | 2.9 | 15.2 |
| A10 | 5.3 | 92 | 2.2 | 5.4 |
>TRINITY_DN124436_c4_g1_i2 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCTTGCTATGACATCT
TTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGT
CTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTT
CTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTC
CTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATC
TTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCT
GATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGG
>TRINITY_DN124436_c4_g1_i16 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGGTTTATAGCTTGCTCCATTTTTGCCCTTTGAATTAAAAAAAAAATCCTAAATAATTCATGCTGTTTAACATAGAAATATATGCATCCATGCCATAATCAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGgtaagcaagttaaaacaattctattgtgtataa
tttgctcttttctttcgagttcgtttctgttgagcatttgatttgcctcaactgtggaagctgtggattggtctctcagTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGTACAATGGCACTGCTAATTAGTTCTATTTTTTTTATTATTGGGGGACATGATGTTTTT
CCTTTGATTAAAGTCCTATTGTTTTGCCTTCATTTAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
Intron 3 GTGGGAATAT ... GAGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.63 | 13.2 | 48.8 | 24.7 |
| A2 | 79.59 | 8.9 | 43 | 26 |
| A3 | 70.08 | 24.3 | 62.5 | 51.2 |
| A4 | 81.05 | 7.2 | 30 | 29 |
| A5 | 70.37 | 8 | 22 | 16 |
| A6 | 83 | 16.6 | 85.3 | 75.3 |
| A7 | 75.57 | 40.7 | 122.7 | 127 |
| A8 | 76.97 | 33.9 | 97.5 | 125.8 |
| A9 | 72.31 | 51.3 | 151.7 | 115.1 |
| A10 | 80.09 | 34.4 | 172.2 | 101.3 |
>TRINITY_DN124436_c4_g1_i14 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGCACAGAAGGA
AATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGG
GGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGA
ATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAA
TCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGA
ATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAA
AGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGG
>TRINITY_DN124436_c4_g1_i15 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTgtgggaatatatatgccttgctatgacatct
ttcgagattggcttgaaggattttcatataagaatgcacctctgttcatgccatatgctccattagtagcaggatctatggcacgttctttggcatgcattatttgttctcccattgaactagcaaagacgaggatgcagGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGT
CTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTGTAAGTGTTCATCCTTGAGGCTTGAACTAAATAATGTTCTCAATTACTGTTTTGTCAGATAAAAGGAAATTCCAGTTTCCTGTTTCTCTCACAAAGTTGTCTTGAATCTCTTTTCTGTGAGTTCCACTCCATGATCATACATTGATATGAGATGGGTCGA
TTTTGCATTTTGTTAGCATTTGGATGTCAAATGATAAAAATATATCAATATTCAGCACTGTTTATACTAATCCAGTCTGCTGTGATCTGCTTTCTAGTGTCATAAAATATCCAATGACTGGAATTTGTCTATTATCATAGCTATGTTTCCAATTGAGCTAAAAAAAACAGTAAGATTCCAGCACCATTGCTGACCCATTT
AAAGATTAAGCCACCAAATTTTCTAGTTGCATTCAAGACACTTACCATGCGACAATGTTAAGGGAAACTGGAGACAGTGAGATGTCTTTCTTGGATATTCGCATATGGATGTCGGGCCTGATATTCTTTCCTTTTATCACCTTACCATGTTTGGTGAAGAAATTAAGATCTGATTTAGTTAAAATAATGGCAGAGGCCAA
AGAAGCCTTTCTGAATGGATATCTAAACAAGTCCAGGAATGCAGAGGAAACTAAAGGAATTTTCTGTCTGGAATTATATATACTGACCTATGCTATGATACTGTGCAACCTATCATTTTAAATTTTAAGATTGAAGATGGAAATGCTCAAATAATGAAGGGTGCTGCTGATACCTAGACAGTAACTGCTCTTAGAATTTA
CAGTTTTGCATCTCATTAAAGTTCATGTTAATGTTTCCTTAATACAGGAACTACTCCTAGGGCAGCCACTTATTATAATGGTCATTGTATAAAATAATTGTGCCCATTTCATGTGCAGTCAATTATCAATTGAGGAGTTTTGTTCTTTCAAAATTTTGACGTCTATATAGTCTCATACAGCTGGCTCACTAAAAGGAGGG
CTTTTCGGAGATTATATCAGGGCCATGGAAAAAATCATTTACTAGTATATGAATGCAGTTTGAGTTATGTTAAACACATTAACATAATAGCCCTGTGAGATATCTAGAGGAATTTGATTCCCATTCTTTTCTTATTTCTTATCTACAAAAGATGTTATAATTCTCAAACAAGGGTTTCAGTAAAACATGACCATCTAAAG
AGGCATACAGCATTCCAACTGGACTTCTTTAACTGCAAATTGCTTATATAATGCTTTCCCATTAAGTCCAAGACATGATGTTTTATCCATCTTGAATGCATGCTTGTATTAAGGCCGTGTTACTGAAACTTCGGATTTTCCTGTTCATAAAATGCTTCTGATATGGAAATGGTATGGAAACCCTTGAAAAACTTTTGGGA
AACATTTCCTACAAGTTTCTTGTACCAGGTAAAATCAGGTACGGAGATGCCATTTCTATACTATAAAATCACTTTAATAGCTTTCTTAAATTAGTGATTGGTGGGCCTGTTACCATACAAACTAGCATCCTTAAAGTGCAAGGTCTTCACTACGGTTTAGCTGAGGGCAACTCTAATTAGGTGTTTTCATAAATAGGAAT
ATTTTTGAGGCCTTGGAACATAATATATGATAAGTCAATTACGAAAAGAGACATGATGGAAATGGATGAAAGAGCTAGTGGAATAAGATAAGATAATATTATTAACGTCCAATAAATGACCGCAAAAAGGCCAATGGGGCTACTAAGTACAAC
Intron 4 GTGGAAAACC ... GAGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.17 | 13.4 | 11 | 25 |
| A2 | 74.51 | 9 | 5 | 26 |
| A3 | 67.41 | 24.2 | 16 | 50 |
| A4 | 80.39 | 7.4 | 8 | 29 |
| A5 | 66.67 | 8 | 4 | 16 |
| A6 | 82.39 | 16.2 | 18 | 75 |
| A7 | 75.83 | 41.2 | 12 | 128 |
| A8 | 79.35 | 33.8 | 16 | 128 |
| A9 | 69.3 | 51.6 | 34 | 116 |
| A10 | 75.13 | 34.6 | 11 | 103 |
>TRINITY_DN42116_c0_g2_i2 from sample A7 / Example spliced isoformAATCACGCGAAATTGCAAAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGC
CATTACTTTCAATCCTTTGGACGTCGTCAAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGCACA
GAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTGTAAGTGTTCATCCTTGAGGCTTGAACTAAATAATGTTCTCAATTACTGTTTTGTCAGATAAAAGGAAATTCCAGTTTCCTGTTTCTCTCACAAAGTTGTCTTGA
ATCTCTTTTCTGTGAGTTCCACTCCATGATCATACATTGATATGAGATGGGTCGATTTTGCATTTTGTTAGCATTTGGATGTCAAATGATAAAAATATATCAATATTCAGCACTGTTTATACTAATCCAGTCTGCTGTGATCTGCTTTCTAGTGTCATAAAATATCCAATGACTGGAATTTGTCTATTATCATAGCTATG
TTTCCAATTGAGCTAAAAAAAACAGTAAGATTCCAGCACCATTGCTGACCCATTTAAAGATTAAGCCACCAAATTTTCTAGTTGCATTCAAGACACTTACCATGCGACAATGTTAAGGGAAACTGGAGACAGTGAGATGTCTTTCTTGGATATTCGCATATGGATGTCGGGCCTGATATTCTTTCCTTTTATCACCTTAC
CATGTTTGGTGAAGAAATTAAGATCTGATTTAGTTAAAATAATGGCAGAGGCCAAAGAAGCCTTTCTGAATGGATATCTAAACAAGTCCAGGAATGCAGAGGAAACTAAAGGAATTTTCTGTCTGGAATTATATATACTGACCTATGCTATGATACTGTGCAACCTATCATTTTAAATTTTAAGATTGAAGATGGAAATG
CTCAAATAATGAAGGGTGCTGCTGATACCTAGACAGTAACTGCTCTTAGAATTTACAGTTTTGCATCTCATTAAAGTTCATGTTAATGTTTCCTTAATACAGGAACTACTCCTAGGGCAGCCACTTATTATAATGGTCATTGTATAAAATAATTGTGCCCATTTCATGTGCAGTCAATTATCAATTGAG
>TRINITY_DN42116_c0_g2_i6 from sample A7 / Example unspliced isoform:AATCACGCGAAATTGCAAAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGC
CATTACTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGT
TCCAACTgtggaaaacctgatcttcacaatgaggatattttgcatattactgaagacttttgtagaattttggaaaattcaaatatgcttttggagattctggtgggaatatatatgccttgctatgacatctttcgagattggcttgaaggattttcatataagaatgcacctctgttcatgccatatgctccattagt
agcaggatctatggcacgttctttggcatgcattatttgttctcccattgaactagcaaagacgaggatgcagGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAG
GAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACA
CGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTC
TCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCT
ACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATT
AGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGGGTATTTCATTTTGTTCGCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAG
TACCTTGTTGAACAATTCATTCTATAAATTGTAACAGATTGAAATAAAAAATATGCTTTTCTGTTCCAAAA
Intron 5 GTTTATAGCT ... CAGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.34 | 79.5 | 38 | 6 |
| A2 | 25 | 45 | 15 | 0 |
| A3 | 22.5 | 69 | 20 | 2 |
| A4 | 24.05 | 60 | 19 | 2 |
| A5 | 25.02 | 30 | 10 | 2 |
| A6 | 24.39 | 59 | 19 | 0 |
| A7 | 28.98 | 122.5 | 50 | 0 |
| A8 | 25.55 | 87.5 | 30 | 0 |
| A9 | 23.19 | 132.5 | 40 | 0 |
| A10 | 29.55 | 124 | 52 | 0 |
>TRINITY_DN124436_c4_g1_i10 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAAT
GAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
>TRINITY_DN124436_c4_g1_i16 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGgtttatagcttgctccatttttgccctttgaattaaaaaaaaaatcctaaataattcatgctgtttaacatagaaatatatgcatccatgccataatcagaccagactgcagGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGGTAAGCAAGTTAAAACAATTCTATTGTGTATAA
TTTGCTCTTTTCTTTCGAGTTCGTTTCTGTTGAGCATTTGATTTGCCTCAACTGTGGAAGCTGTGGATTGGTCTCTCAGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGTACAATGGCACTGCTAATTAGTTCTATTTTTTTTATTATTGGGGGACATGATGTTTTT
CCTTTGATTAAAGTCCTATTGTTTTGCCTTCATTTAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
Intron 6 GTACAATGGC ... CTTCATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.46 | 32.3 | 5 | 5 |
| A2 | 0 | 14.5 | 0 | 0 |
| A3 | 8.48 | 23.3 | 2 | 2 |
| A4 | 2.13 | 25 | 0 | 1 |
| A5 | 8.24 | 13 | 1 | 1 |
| A6 | 0 | 42 | 0 | 0 |
| A7 | 2.27 | 47 | 1 | 1 |
| A8 | 0 | 36.3 | 0 | 0 |
| A9 | 1.62 | 65.8 | 0 | 2 |
| A10 | 0 | 48.3 | 0 | 0 |
>TRINITY_DN124436_c4_g1_i12 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCT
GATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
>TRINITY_DN124436_c4_g1_i16 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGGTTTATAGCTTGCTCCATTTTTGCCCTTTGAATTAAAAAAAAAATCCTAAATAATTCATGCTGTTTAACATAGAAATATATGCATCCATGCCATAATCAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGGTAAGCAAGTTAAAACAATTCTATTGTGTATAA
TTTGCTCTTTTCTTTCGAGTTCGTTTCTGTTGAGCATTTGATTTGCCTCAACTGTGGAAGCTGTGGATTGGTCTCTCAGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGgtacaatggcactgctaattagttctattttttttattattgggggacatgatgttttt
cctttgattaaagtcctattgttttgccttcatttagGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
Intron 7 GTCTACTCAA ... CATATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.78 | 52 | 20 | 4 |
| A2 | 34.67 | 49 | 26 | 0 |
| A3 | 18.64 | 48 | 11 | 0 |
| A4 | 20 | 36 | 9 | 4 |
| A5 | 48.28 | 15 | 14 | 1 |
| A6 | 25.62 | 90 | 31 | 0 |
| A7 | 29.64 | 235 | 99 | 4 |
| A8 | 21.9 | 214 | 60 | 1 |
| A9 | 25.2 | 187 | 63 | 6 |
| A10 | 28.32 | 162 | 64 | 10 |
>TRINITY_DN38813_c0_g1_i6 from sample A9 / Example spliced isoformCGCGAAATTGCAAAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTA
CTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAA
CTGTGGGAATATATATGCCTTGCTATGACATCTTTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATC
AAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGA
TGTCAATGCATCAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCA
CAGGTGTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGT
CTAATAAAAGGGCAAAGCATCTCAGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTA
GATTGAAGGCTCCACTCATTTTAGGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGC
ATGACTATTATAGAAACATACATCGGGTATTTCATTTTGTTCGCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAGTACCTTGTTGAACAATTCATTCTATAAATTGTAACAGATTGAAATAAAAAATATG
>TRINITY_DN38813_c0_g1_i14 from sample A9 / Example unspliced isoform:CGCGAAATTGCAAAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTA
CTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCT
TGCTATGACATCTTTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAA
AACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTT
TGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGgtctactcaataacatatactgcatgtttaattaagatattgtcttctttgttgtacttgatgacttcaattcacattcatatttcagAAGGATCCGATGAAAGC
AATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGCAAGTTGGTTTTGTTATCTCCTTGAAAGCATTGTCTGCAGGTATAACATGCATTATAGGTTAGCTGTACAATACTTATTCTCTGTAGGAATTAAACATGTTTGTCCAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGC
CGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTC
AGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTA
GGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACAT
CGGGTATTTCATTTTGTTCGCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAGTACCTTGTTGAACAATTCATTCTATAAATTGTAACAGATTGAAATAAAAAATATG
Intron 8 GTAGCTTTTT ... CTTCATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.79 | 53.3 | 4 | 5 |
| A2 | 0 | 37.3 | 0 | 0 |
| A3 | 5.62 | 42 | 3 | 2 |
| A4 | 1.06 | 46.7 | 0 | 1 |
| A5 | 3.53 | 27.3 | 1 | 1 |
| A6 | 0 | 76.3 | 0 | 0 |
| A7 | 1.02 | 97.3 | 1 | 1 |
| A8 | 0 | 60.3 | 0 | 0 |
| A9 | 0.81 | 122.7 | 0 | 2 |
| A10 | 0 | 97.7 | 0 | 0 |
>TRINITY_DN124436_c4_g1_i2 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCTTGCTATGACATCT
TTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGT
CTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTT
CTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTC
CTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATC
TTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCT
GATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGG
>TRINITY_DN124436_c4_g1_i16 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGGTTTATAGCTTGCTCCATTTTTGCCCTTTGAATTAAAAAAAAAATCCTAAATAATTCATGCTGTTTAACATAGAAATATATGCATCCATGCCATAATCAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGGTAAGCAAGTTAAAACAATTCTATTGTGTATAA
TTTGCTCTTTTCTTTCGAGTTCGTTTCTGTTGAGCATTTGATTTGCCTCAACTGTGGAAGCTGTGGATTGGTCTCTCAGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGgtagctttttttcgaggaaggtacaatggcactgctaattagttctattttttttattattgggggacatgatgttttt
cctttgattaaagtcctattgttttgccttcatttagGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
Intron 9 GTTTATAGCT ... CCATAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.67 | 85.9 | 38 | 6 |
| A2 | 26.52 | 41.6 | 15 | 0 |
| A3 | 24.41 | 61.9 | 20 | 2 |
| A4 | 23.39 | 62.3 | 19 | 2 |
| A5 | 24.1 | 31.5 | 10 | 2 |
| A6 | 24.32 | 59.2 | 19 | 0 |
| A7 | 29.17 | 121.8 | 50.2 | 0 |
| A8 | 26.26 | 84.3 | 30 | 0 |
| A9 | 22.96 | 134.8 | 40.2 | 0 |
| A10 | 29.67 | 123.3 | 52 | 0 |
>TRINITY_DN124436_c4_g1_i2 from sample A1 / Example spliced isoformAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCTTGCTATGACATCT
TTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGAACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGT
CTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTT
CTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTC
CTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATC
TTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCT
GATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGG
>TRINITY_DN124436_c4_g1_i16 from sample A1 / Example unspliced isoform:AAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATAATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTT
GGACGTCGTCAAGgtttatagcttgctccatttttgccctttgaattaaaaaaaaaatcctaaataattcatgctgtttaacatagaaatatatgcatccatgccataatcagACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGGTAAGCAAGTTAAAACAATTCTATTGTGTATAA
TTTGCTCTTTTCTTTCGAGTTCGTTTCTGTTGAGCATTTGATTTGCCTCAACTGTGGAAGCTGTGGATTGGTCTCTCAGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGTACAATGGCACTGCTAATTAGTTCTATTTTTTTTATTATTGGGGGACATGATGTTTTT
CCTTTGATTAAAGTCCTATTGTTTTGCCTTCATTTAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGAAAACCTGATCTTCACAATGAGGATATATTGCATATTACTGAAGACTTTTGTAGAATTTTGGAAAATTCAAATATGATTTT
Intron 10 GCAAGTTGGT ... GTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.98 | 44 | 2.6 | 9 |
| A2 | 26.87 | 49 | 2.5 | 18 |
| A3 | 24.53 | 40 | 3.5 | 13 |
| A4 | 14.89 | 40 | 2.9 | 7 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 28.06 | 100 | 7.1 | 39 |
| A7 | 26.24 | 208 | 11.2 | 74 |
| A8 | 26.18 | 251 | 12.2 | 89 |
| A9 | 29.26 | 191 | 18.6 | 79 |
| A10 | 24.24 | 150 | 11.7 | 48 |
>TRINITY_DN42946_c1_g1_i5 from sample A6 / Example spliced isoformGCGACGGCCCTCGTTTAAGAGCACATATTTAAATGTGCCACCGTACTATATAGTATGCCGTTCAAATCACGCGAAATTGCAAAAGGTATTTAAAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAG
ATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGTAGCTTTTTTTCGAGGAAGGAGGGGTTATATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATG
TGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGTCAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAG
TATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGGAAAATACTGATGGAGACATGGAGGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCAC
GTGTAAGCCGTGCTGGTCCTTCTGTCGGAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAA
AGCATCTCAGATTACATCTTCAGAATCTTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCAC
TCATTTTAGGTAGTCCCTGATTGCTTGTTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAA
ACATACATCGGGTATTTCATTTTGTTCGCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAGTACCTTGTTGAACAATTCATTCTATAAATTGTAACAGATTGAAATAAAAAATATGC
>TRINITY_DN42946_c1_g1_i3 from sample A6 / Example unspliced isoform:GCGACGGCCCTCGTTTAAGAGCACATATTTAAATGTGCCACCGTACTATATAGTATGCCGTTCAAATCACGCGAAATTGCAAAAGGTATTTAAAGGTGCGGAGGGAACCATAAACCACCGTAGAAAACTGAAATTCCGTCCATCAATGGCAGACTCAGAGAAGGATCCTCGTCCTTTAGGTCCTAACAATTCTAGTCATA
ATGCGCAGAAAATAAGTATGACTGAGCGGATGGCGGCTGGTGCAGGGGCTGCGGTTTTCTCCGCCATTACTTTCAATCCTTTGGACGTCGTCAAGACCAGACTGCAGGCTCAGATTGGCCAGAAGACGCCAAATGTTAGGTCGGACAGGTATAATGGCGCATTTGATGCATTCTGCAAGATAATTCGGCAGGAGGGGTTA
TATCGTCTTTGGAGAGGGACAAGTGCTGGTTTAACATTGGCTGTTCCAACTGTGGGAATATATATGCCTTGCTATGACATCTTTCGAGATTGGCTTGAAGGATTTTCATATAAGAATGCACCTCTGTTCATGCCATATGCTCCATTAGTAGCAGGATCTATGGCACGTTCTTTGGCATGCATTATTTGTTCTCCCATTGA
ACTAGCAAAGACGAGGATGCAGGCACAGAAGGAAATTGGCATGGATATCAAACCTGCAGGAATGTGGAAAACTTTACAGAGTCTGCCATTGTCTGTGAAAAATACATCTGCGGGAAGAGATTTACAAGGATTCAAGATTCTGTGGACAGGAGCAGGAGCTCAACTAGCTCGTGATGTTCCCTTCTCTGCAATTTGCTGGT
CAACTCTTGAGCCAATCAGGCGTTACCTGCTGGGGATGGTGAAGTCTGATGTCAATGCATCAAGTATTTTGGGAGCAAACTTCTCAGCTGGCCTCATAGCGGGTGGTATTGCTGCTGCTGCTACTTGCCCTTTGGATGTTGCCAAAACACGACGACAAACAGAGAAGGATCCGATGAAAGCAATGAAAATAAATACCAGG
AAAATACTGATGGAGACATGGAGgcaagttggttttgttatctccttgaaagcattgtctgcaggtataacatgcattataggttagctgtacaatacttattctctgtaggaattaaacatgtttgtccagGGATGGTGGAATACGGGCGCTATTCACAGGTGTAGGACCACGTGTAAGCCGTGCTGGTCCTTCTGTCG
GAATTGTGGTTTCATTCTATGAAGTTCTCAAATACAAGCTACACCATACATAGCTGTCTCAATGAGTATGCAATGTGCATACGAACACGCTGTGAAGTTAATGTGCTCGCTGAGATGCTCTGTGATGCTTGTACTTACGAAATCAATGGCCATTGTGTCTAATAAAAGGGCAAAGCATCTCAGATTACATCTTCAGAATC
TTATAAATGGGACTTACCATTCGGAGAGTAGATACAATAAAAAAACTATAATTGGGCTACACATTTTGCAGTTAGAAACTATACCTCAGGCTCAGGAAAGGGCAGGAATTGTTTTACATAATAAAATTCCAAAATATCTGGAATTCTTTGATAGTTTAGATTGAAGGCTCCACTCATTTTAGGTAGTCCCTGATTGCTTG
TTGCTGAGTCAAGGCCATTCTTTGAGCACAATGGAAAATTCCATTTTCCATCTCCATTAGTACAGCATTAATATCTCAAGCAAATTAAGGTATGAATTCTGGAAAATATTCTTTGGAAATGACTTTATTATCTTGCCTTCAAAGTTGTGGCATACTGCATGACTATTATAGAAACATACATCGGGTATTTCATTTTGTTC
GCTGTAATACCTTTTGTATATTTGTCAACTTATCACAACACAATTTACATGTGGTGAGTACCTTGTTGAACAATTCATTCTATAAATTGTAACAGATTGAAATAAAAAATATGC