sp|Q9ZUI6|AP1G2_ARATH ----> AP-1 complex subunit gamma-2
Intron 1 GTATGTATGA ... AATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.11 | 31 | 4.9 | 8 |
| A2 | 11.23 | 48.3 | 5.1 | 6 |
| A3 | 14.54 | 36 | 6 | 6 |
| A4 | 7.68 | 24.5 | 2.6 | 2 |
| A5 | 33.09 | 13.1 | 5.6 | 6 |
| A6 | 11.73 | 136.9 | 20.4 | 18 |
| A7 | 11.82 | 121.1 | 20.1 | 16 |
| A8 | 16.7 | 96.4 | 12.1 | 19 |
| A9 | 9.24 | 110.1 | 11.6 | 11 |
| A10 | 14.06 | 80.5 | 15 | 13 |
>TRINITY_DN44378_c1_g2_i2 from sample A8 / Example spliced isoformTGGTCATTTGAACATTGCAAACTGCAATTTCAACACTTCATGAAGTTACCGGATTCCCGCAATCGGGGACGATTCACTTGTGGCTTTGGCTTATATTGCTCCATTGAGATTTCCCGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACT
GCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGT
TACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAG
ATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGAT
GTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGG
TGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTAT
TCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAA
GTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAAC
AGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCT
CCATTCTTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTT
GATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTCCTGTGCCTGTACA
ATCAACTGTTACAGCATCATCCTTAACACCTTCCAGTCAACCACAGGCGATTTCTGTTACTCCTTTGGATCCATTATCGCAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACCGCAAACAGTCACAGCGAAGTTAAAAAGCCATCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCC
AGCAGCAACTGATGATGGTGTTACGGCATATCCCCCAATAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGC
AAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTT
TTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTA
GCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTTTATTGCATCTACACAAAATTTATAAAGCATGACATTCT
GAATTAGGGTGCACTGATGTTCTCCAAATTTAACCAACCATAAGCACTTTCCATATTATTTTTGAAAGGTGTGATTGGTTCCCACCGAAGGGACAAAACACTAAGTAAATGGTGGAATGAAATTGAGTGTTGGCTGCATATTTAAGATTTAATTTTAATGTGCTTCGCTAGCCTTGTCACTGGGATACTGGAGTTAACTG
CTTCATGCATGCAATTTGTCCTGCCCTAAGTTGATGCCAAACATACATTTTTTACTCTTTTCAGTCTAGTCATGGTCTCATTATTTTCTGAAGTTGTACAAGTACAAAATTTTAAAATGATTATTAGTTGATATTTTATCAAAACTAAGCCAAATGTCTAAGGTAAGTGCTTTTTATTTTAGTTGATCACAG
>TRINITY_DN44378_c1_g2_i7 from sample A8 / Example unspliced isoform:TGGTCATTTGAACATTGCAAACTGCAATTTCAACACTTCATGAAGTTACCGGATTCCCGCAATCGGGGACGATTCACTTGTGGCTTTGGCTTATATTGCTCCATTGAGATTTCCCGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACT
GCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGT
TACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAG
ATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGAT
GTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGG
TGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTAT
TCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAA
GTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAAC
AGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCT
CCATTCTTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTT
GATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCATC
CTTAACACCTTCCAGTCAACCACAGGCGATTTCTGTTACTCCTTTGGATCCATTATCGCAGTTGGCACCATTAGCCTCTTCGGCCTCTCCATCACCACAAATAGTCACAGCGAAGTTAAAAGGCCGTCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCCAGCAGCAACTGgtatgtatga
caaacagttgtaacttctcaaattctcctatccataatagcatcctcctggatatatgttctttgattatgcatttgttcatggaaaatgcctggaaatgagatgtttcattttgaagtttaatgttgtgaaattttacagATGATGGTGTTACGGCATATCCCCCAATAGCAAATCATTGAAGGTCACTTTTGAGTTCA
CAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTATTCCAAAGGCAATATTGATTTTCCATTTGTCATTTATTTCAGTTTTTTCCAAACCCCGAATTTTTTAGTTCACAAAGCAGCTAGGCAAGCCAGAATATATATAT
GTACCATGGCATCATTGCATCTTTTCTGTTTGATGGTTTTTACGGCTATATATATTTTTTCTTCTATTCCAAATGTTAGTTTCCGTGAAGCATGAAGGAATTTGGTCTTCTCAAGTATATCTTCTCACCAAAGTGTTTGAATGCAATATTTTCATTAT
Intron 2 GTAACAAAGT ... GATGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.96 | 50 | 5 | 1 |
| A2 | 12.9 | 27 | 2 | 4 |
| A3 | 10.87 | 41 | 2 | 5 |
| A4 | 27.08 | 35 | 6 | 13 |
| A5 | 23.08 | 10 | 3 | 3 |
| A6 | 18.47 | 128 | 4 | 29 |
| A7 | 17.5 | 99 | 0 | 21 |
| A8 | 21.84 | 161 | 5 | 45 |
| A9 | 21.37 | 92 | 10 | 25 |
| A10 | 20 | 76 | 8 | 19 |
>TRINITY_DN44378_c1_g2_i2 from sample A8 / Example spliced isoformTGGTCATTTGAACATTGCAAACTGCAATTTCAACACTTCATGAAGTTACCGGATTCCCGCAATCGGGGACGATTCACTTGTGGCTTTGGCTTATATTGCTCCATTGAGATTTCCCGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACT
GCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGT
TACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAG
ATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGAT
GTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGG
TGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTAT
TCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAA
GTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAAC
AGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCT
CCATTCTTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTT
GATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTCCTGTGCCTGTACA
ATCAACTGTTACAGCATCATCCTTAACACCTTCCAGTCAACCACAGGCGATTTCTGTTACTCCTTTGGATCCATTATCGCAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACCGCAAACAGTCACAGCGAAGTTAAAAAGCCATCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCC
AGCAGCAACTGATGATGGTGTTACGGCATATCCCCCAATAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGC
AAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTT
TTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTA
GCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTTTATTGCATCTACACAAAATTTATAAAGCATGACATTCT
GAATTAGGGTGCACTGATGTTCTCCAAATTTAACCAACCATAAGCACTTTCCATATTATTTTTGAAAGGTGTGATTGGTTCCCACCGAAGGGACAAAACACTAAGTAAATGGTGGAATGAAATTGAGTGTTGGCTGCATATTTAAGATTTAATTTTAATGTGCTTCGCTAGCCTTGTCACTGGGATACTGGAGTTAACTG
CTTCATGCATGCAATTTGTCCTGCCCTAAGTTGATGCCAAACATACATTTTTTACTCTTTTCAGTCTAGTCATGGTCTCATTATTTTCTGAAGTTGTACAAGTACAAAATTTTAAAATGATTATTAGTTGATATTTTATCAAAACTAAGCCAAATGTCTAAGGTAAGTGCTTTTTATTTTAGTTGATCACAG
>TRINITY_DN44378_c1_g2_i3 from sample A8 / Example unspliced isoform:TATCCATCATGGAGCATCTCTCATGCTACAATCCATCTGGAACTGTCTAGGAGCTGAACATACACCATGTACCCCAAATCTCATGAAGCTCCTCCAAACATGGTGTAAATACTTTTGGAGTAACCTGAAAATCTGACAATTTGCACTTGTCCCCGACCACTATTGTGGGTGTGGGCGCAAAAACGCAAGCATGCCACGTG
GATATATTTGAACTGGGGTGGGGGCTATATTAGCTACCCACTTTCATTGACTTGGCAAGCCACCATTGATGTCATTCATTTTTTCACCTCTATAGGTTTTGGAATTCATCGGGGGCAGTAATTTTGTAAAGCGCAGATGCTTCCACTGTCTTTTTTAATTGTTTCTATTTTTAACTGCTTTTTGTCAAGGAGTCATTGCC
CTTAATTTTGCGCTTCTTATTACTATTATAAATTCTATTTATAATGTGTATTACTTCATCTTTTCTATTTCACAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGgtaacaaagtcagaatggat
gtatgcatgtgttgatgaggctctagctaaattatatgttttgctaggtgccttgtttgagttgttcttgtgttggttgttattgtatcctcttgaaacccattctttgcttgttaactgaatagttagcttttacagattagaatatgacatgaaaggtgtgtgtcatattcattcaataatttcaataatgtgcattc
attcagaaatgctaaagcctgatctagtcctgcttcttgatgtcacagAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCTGTTTGTTTTATTTTGAA
GGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTTTTAACTGGGGAAAAGCA
TCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTTTATTGCATCTACACAAAATTTATAAAGCATGACATTCTGAATTAGGGTGCACTGATGTTCTCCAAATTT
AACCAACCATAAGCACTTTCCATATTATTTTTGAAAGGTGTGATTGGTTCCCACCGAAGGGACAAAACACTAAGTAAATGGTGGAATGAAATTGAGTGTTGGCTGCATATTTAAGATTTAATTTTAATGTGCTTCGCTAGCCTTGTCACTGGGATACTGGAGTTAACTGCTTCATGCATGCAATTTGTCCTGCCCTAAGT
TGATGCCAAACATACATTTTTTACTCTTTTCAGTCTAGTCATGGTCTCATTATTTTCTGAAGTTGTACAAGTACAAAATTTTAAAATGATTATTAGTTGATATTTTATCAAAACTAAGCCAAATGTCTAAGGTAAGTGCTTTTTATTTTAGTTGATCACAG
Intron 3 GTAAGTAGAT ... TCATGTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.94 | 32 | 36 | 1 |
| A2 | 51.11 | 22 | 23 | 1 |
| A3 | 66.67 | 4 | 8 | 1 |
| A4 | 52.17 | 11 | 12 | 2 |
| A5 | 58.06 | 13 | 18 | 0 |
| A6 | 54.55 | 10 | 12 | 0 |
| A7 | 50.98 | 25 | 26 | 0 |
| A8 | 50 | 14 | 14 | 0 |
| A9 | 50 | 22 | 22 | 0 |
| A10 | 54.55 | 15 | 18 | 0 |
>TRINITY_DN111761_c0_g1_i2 from sample A2 / Example spliced isoformCGAGAATTTAACAAAAGACAACAATACGCCGATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAATACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATATATTTTT
CGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTGCCAGTAA
TTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCC
AAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACAT
AGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCG
ACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGA
CTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTC
AAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAAT
TATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTT
CAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTATATACTGATCAAATGGGCTCAATTTTGTCCTCTGCATGAAACAATGCCA
GCTGAATTGAGACACTATATTTCTCTATGAACCCACCAGGGAAGCTCTTAGATACCATCTCACATTGCATACCTCTTCAATGAGGTAACAGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCC
ACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCTCCATTCTTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTG
TGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTTGATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAG
CCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCAGCCTTAACACCTTCCAGTCAACCAGAGGCGGTTTCTGTTACTCCTTTGGATCCATTATCACAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACTGCAAACAGTCACAGC
ACCTCTTGGTGATATCAAATCTTTTGCAGGTTTGACAATGAATGGAGTTCATGAAGTTAAAAAGGCATCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCCAGCAGCAACTGATGATGGTGTTCCGACATATCCTCCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGT
TCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGT
CAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATT
GCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCA
CTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTTTATTGCATCTACACAAAATTTATAAAGCATG
>TRINITY_DN111761_c0_g1_i1 from sample A2 / Example unspliced isoform:CGAGAATTTAACAAAAGACAACAATACGCCGATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAATACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATATATTTTT
CGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTGCCAGTAA
TTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCC
AAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACAT
AGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCG
ACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGA
CTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTC
AAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAAT
TATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTT
CAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTgtaagtagatctatgtgcttctgtgcgtgcttccctttatttgatcttac
atgtatggttggttgcacaagtaaggcaggatattgcacccgagggttggctgtacaaaataaaattgaaacagagttgctgaatgtgtttttatcatggatgtcatgtcaagATATACTGATCAAATGAGC
Intron 4 GTATCCTGTT ... CATTTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.11 | 116 | 21 | 61 |
| A2 | 25.24 | 77 | 20 | 32 |
| A3 | 22.81 | 66 | 10 | 29 |
| A4 | 25.38 | 97 | 34 | 32 |
| A5 | 23.36 | 41 | 9 | 16 |
| A6 | 23.64 | 21 | 9 | 4 |
| A7 | 22.35 | 33 | 11 | 8 |
| A8 | 21.21 | 13 | 3 | 4 |
| A9 | 22.08 | 30 | 8 | 9 |
| A10 | 24.37 | 45 | 11 | 18 |
>TRINITY_DN111761_c0_g1_i3 from sample A2 / Example spliced isoformCGAGAATTTAACAAAAGACAACAATACGCCGATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAATACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATATATTTTT
CGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTGCCAGTAA
TTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCC
AAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAGGACTTGAATCACATGAATCAATACAT
AGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCG
ACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGA
CTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTC
AAATCGTGATAATAACATCCGGTAAGCATGTTTAAAAGCTTTGCAGTTTGGTTCCTTTTTTTTTTTTGATTGCTTGAGTGATTTCAAATGGGTTCATATCTATATCTATAGCTGCTCCAAAATAACAAATTCTGTAGGGCTGGCAATAGAAGAATTTGTATGGATTGTTCCTTTCTAGTCACTACTTTTATATGCATTTC
TTGTCACATAGTCGTAGTGTTGACACTCCCATATCACTATTGTGGCTTTTGTACTTTCTAGTCCCC
>TRINITY_DN111761_c0_g1_i4 from sample A2 / Example unspliced isoform:CGAGAATTTAACAAAAGACAACAATACGCCGATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAATACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATATATTTTT
CGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTGCCAGTAA
TTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCC
AAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAgtatcctgttacacaactctttcataa
atatgctgatttcaggcctttaatcatatatgtcattcatcttaaaagtaattttttgtgttttccttattgtaaggtccaagaactattcatgcataatgctaaaatttatttctgaaatggcatactttgttatttgtaaactgttaaaataacagtctttgagttttcctttagaagggtgctcctgcttctccctt
gacatttaaaagGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTG
CAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGT
GGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCT
CCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCC
TTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGC
TATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAACAGAGTC
AGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCTCCATTC
TTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTTGATTTA
AGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCAGCCTTAAC
ACCTTCCAGTCAACCAGAGGCGGTTTCTGTTACTCCTTTGGATCCATTATCACAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACTGCAAACAGTCACAGCACCTCTTGGTGATATCAAATCTTTTGCAGGTTTGACAATGAATGGAGTTCATGAAGTTAAAAAGGCATCTGTACAAGCTGCTCCTGTAGTTGACT
TGTTAGGAGATTTGAGTCCTGCTCCAGCAGCAACTGATGATGGTGTTCCGACATATCCTCCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCT
GCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCC
TGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATA
TATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTT
TATTGCATCTACACAAAATTTATAAAGCATG
Intron 5 GTAAACACTT ... TTGCTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.16 | 99 | 29 | 21 |
| A2 | 17 | 83 | 16 | 18 |
| A3 | 17.32 | 74 | 20 | 11 |
| A4 | 14.62 | 111 | 30 | 8 |
| A5 | 17.95 | 48 | 12 | 9 |
| A6 | 12.15 | 47 | 8 | 5 |
| A7 | 11.83 | 82 | 8 | 14 |
| A8 | 19.4 | 27 | 7 | 6 |
| A9 | 10.43 | 73 | 8 | 9 |
| A10 | 14.89 | 80 | 12 | 16 |
>TRINITY_DN105519_c1_g1_i4 from sample A4 / Example spliced isoformTATTAATAATACGAAAATGAAAAACAGAGAAGCGAGAATTTAACAAAAGACAACAATACGCCTATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAACACCAGATCCCTATCTTCGATCTGCTTTTAGCATTG
GATTTGAACTCTACACCAAAATATATATTTTTCGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCA
AGGATTGCAAAGCACCCAGCATTTGCCAGTAATTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAA
ATGATCAGGATTATAGGCATCGCAATCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTC
AAACAGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAA
TTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCA
CTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTCCGTGTG
CTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCCTTGTGAA
CGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGCTATGCCC
TCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGTAAGAGAATAATTTGGTTAGTCATCCTTCATCTTATATCTGTGATTCATCCCGTGGGTCCAGGATATGTGATTATGTCATAAACTCGTACAGAATTATCTTATTATAAATTCT
CATCC
>TRINITY_DN105519_c1_g1_i2 from sample A4 / Example unspliced isoform:TATTAATAATACGAAAATGAAAAACAGAGAAGCGAGAATTTAACAAAAGACAACAATACGCCTATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAACACCAGATCCCTATCTTCGATCTGCTTTTAGCATTG
GATTTGAACTCTACACCAAAATATATATTTTTCGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCA
AGGATTGCAAAGCACCCAGCATTTGCCAGTAATTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAA
ATGATCAGGATTATAGGCATCGCAATCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTC
AAACAGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAA
TTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCA
CTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAgtaaacacttctttttatattatccaagatgatgctaatataaagctgcatttctctttctgatcttgaaataagactagctgctctctggttgtatgcaga
actatatatcatataagaaatgagtaaatggtagccttctttgacacaaactttgaaaagtatcatgccatacctgaattaggccctgaagctttgatttcaagaatgtttgttcatccgaaattgtgacttttcttcccagctgtcttccctttcccacccgaatcttgggacttttaatcgttcaattaaatgtgtaa
attttttggttctaaataattacttacatagccgggaaatagtttacagtgccatagttcagtgagtatatgcttacagatttattttatttgcaatggaacctgagcaaattcccacagttgactcttctaattaggtgggacaggaacacaaattcattaggttgaagtttacttgtagtgcattggattatgaatgt
taggggtttcaccgagttaaaattgcggtacatattgaaacaatgaaaatgttttgcttccatgccttagtatcttatcgttaatgtatttgtcttgcttctagGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTC
CGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGGTAAGCATGTTTAAAAGCTTTGCAGTTTGGTTCCTTTTTTTTTTTGATTGCTTCATTGATTTCAAATGGGTTCATATCTATATCTATAGCTGCTCCAAAATAACAAATTCTGTAGGGCTGGCAATAGAAGAATTTGTATGG
ATTGTTCCTTTCTAGTCACTACTTTTATATGCATTTCTTGTCACATAGTCGTAGTGTTGACACTCCCATATCACTATTGTGGCTTTTGTACTTTCTAGTCCCATTTAGCTAGGTTGGTCTTCTGT
Intron 6 GTAAGTAGAT ... CTTCAATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.89 | 178 | 12 | 47 |
| A2 | 16.56 | 126 | 11 | 25 |
| A3 | 22.08 | 120 | 6 | 34 |
| A4 | 23.24 | 142 | 6 | 43 |
| A5 | 18.56 | 79 | 8 | 18 |
| A6 | 24.14 | 242 | 0 | 77 |
| A7 | 21.55 | 284 | 5 | 78 |
| A8 | 20.94 | 185 | 4 | 49 |
| A9 | 18.72 | 191 | 2 | 44 |
| A10 | 17.3 | 196 | 2 | 41 |
>TRINITY_DN112484_c0_g3_i11 from sample A3 / Example spliced isoformAGAGAAGCGAGAATTTAACAAAAGACAACAATACGCCTATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAACACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATA
TATTTTTCGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTG
CCAGTAATTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAA
TCTGGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAGGACTTGAATCACATGAATC
AATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTGCAGAGAATTTCATGAAACCGGCTAGTTCTTTG
CTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGTGGAATCACTGATCCTTTTTTGCAAATAAGGGT
TCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCTCCGTGTGCTTGCAATTAACATTCTTGGTCGAT
TTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCCTTGTGAACGATAGCAATGTGAAGCCGTTGACA
AAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGCTATGCCCTCATTGTTGTGATAAGTAATGCAAT
GGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAACAGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGA
AAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCTCCATTCTTCACAAACACCAAAATCTTAAGACAGCATTG
TTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTTGATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATC
TGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCAGCCTTAACACCTTCCAGTCAACCAGAGGCGGTTTCTGTTA
CTCCTTTGGATCCATTATCACAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACTGCAAACAGTCACAGCACCTCTTGGTGATATCAAATCTTTTGCAGGTTTGACAATGAATGGAGTTCATGAAGTTAAAAAGGCATCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCCAGCAGCA
ACTGATGATGGTGTTCCGACATATCCTCCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGA
CCCAGCAAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGG
GATTTTTTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAA
AATCTAGCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCTTATTGCCCTGATTTTATTGCATCTACAC
>TRINITY_DN112484_c0_g3_i1 from sample A3 / Example unspliced isoform:TGGAAAAGTATGGTTAATGCTGAACCAAACTGCTTTTGTGTGGAAAATGTTGAGAGCAATTCAATGCTGGTATAGAAGAGATTACATACTGGAAATTATTGCCAGTGCCCACTACAGATTTTCTTTGTGCTATCTCAACAATGTACATGGATTATTTAAATTATGGTTATGCTAGTGATGTATTGGATTAATCTCTGCTT
TTATATAAAAATAATGCTAGATCTATGCAACATATGTATCTCTGCTTTTGGATCGAAAAAGAGCTTGCTGCTTGAATGATCCATTCATTTAAACTGATTTGAATTATTTTGTCCTGACAAAGGTTGGGTTGCATTTTGTATCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGAT
AAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTgtaagtagatctatgtgcttctgtgcgtgcttccctttatttgatcttacatgtatggttggttgcacaagtaaggcaggatattgcacccgagggttggctgtacaaaataaaattgaaacagagttgctgaatgtgtttttatcatggatgtcatgtc
aagatatactgatcaaatgggctcaattttgtcctctgcatgaaacaatgccagctgaattgagacactatatttctctatgaacccaccagggaagctcttagataccacctcacattgcatacctcttcaatgagGTAACAGAGTCAGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATG
ACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCTCCATTCTTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTT
AGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTTGATTTAAGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAG
ATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCAGCCTTAACACCTTCCAGTCAACCAGAGGCGGTTTCTGTTACTCCTTTGGATCCATTATCA
CAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACTGCAAACAGTCACAGCACCTCTTGGTGATATCAAATCTTTTGCAGGTTTGACAATGAATGGAGTTCATGAAGTTAAAAAGGCATCTGTACAAGCTGCTCCTGTAGTTGACTTGTTAGGAGATTTGAGTCCTGCTCCAGCAGCAACTGATGATGGTGTTCCGAC
ATATCCTCCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCC
TTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCT
GTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTT
TTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCTTATTGCCCTGATTTTATTGCATCTACAC
Intron 7 GTATGTATGA ... AATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.21 | 52 | 0 | 14 |
| A2 | 32.35 | 69 | 1 | 33 |
| A3 | 20 | 52 | 0 | 13 |
| A4 | 22.22 | 35 | 0 | 10 |
| A5 | 24.32 | 28 | 0 | 9 |
| A6 | 23.4 | 180 | 0 | 55 |
| A7 | 23.29 | 168 | 1 | 51 |
| A8 | 17.09 | 131 | 2 | 27 |
| A9 | 23.53 | 156 | 0 | 48 |
| A10 | 20 | 108 | 0 | 27 |
>TRINITY_DN111761_c0_g1_i4 from sample A2 / Example spliced isoformCGAGAATTTAACAAAAGACAACAATACGCCGATTTTTAAATGACACTCTCTGCTCAAAATTTTTCCTTTCATTTGGTTTCTTCCACAGGAAGATCCAGACGATCACAGCAGCAGCAGCTCCCCTTCTCGGAATACCAGATCCCTATCTTCGATCTGCTTTTAGCATTGGATTTGAACTCTACACCAAAATATATATTTTT
CGTGACCCTTTAACTCCCGCGGGTTCGATAGCTCGCCGAGTTTGTATTAACATTGCCCGATCCATTTTATTTTTTCATGCGGATCGGAACTGATGCTGATGAACGCGAGCCGATCCTCGCAATCGAGTAATTATTTAAAGATTTTCTGTTCCGCCGATCTGCGCTGCAAGGATTGCAAAGCACCCAGCATTTGCCAGTAA
TTTGGATTAATTGAGTGGAAGCCTTAGATCTCGGAGTCATGAATGCCTTCTTGATGGGAACGCGACTGAGGGATATGATTCGTGCCATTCGTACATGTAAAACTGCTGCTGAGGAGCGTGCTGTTGTTAGAAAGGAGTGTGCAGCTATACGTACTGCAATCAGTGAAAATGATCAGGATTATAGGCATCGCAATCTGGCC
AAGCTCATGTTCATTCACATGCTTGGTTATCCAACACATTTTGGGCAAATGGAATGTCTGAAGTCCATTGCGTCTGCAGGCTTTCCTGAGAAACGCATAGGATACCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAGGAAGTGCTTATGCTGGTTACAAATTCTCTCAAACAGTATCCTGTTACACAACTCTTTCATAA
ATATGCTGATTTCAGGCCTTTAATCATATATGTCATTCATCTTAAAAGTAATTTTTTGTGTTTTCCTTATTGTAAGGTCCAAGAACTATTCATGCATAATGCTAAAATTTATTTCTGAAATGGCATACTTTGTTATTTGTAAACTGTTAAAATAACAGTCTTTGAGTTTTCCTTTAGAAGGGTGCTCCTGCTTCTCCCTT
GACATTTAAAAGGGACTTGAATCACATGAATCAATACATAGTTGGGCTTGCGCTTTGTGCACTGGGAAACATATGCTCAGCCGAAATGGCTCGTGACCTTGCCCCTGAAGTTGAGAAACTTCTTCACAATAGCAATCCAAACATCCGCAAGAAGGCAGCGTTATGCTCTGTGCGGATTATACGGAAAGTGCCAGATCTTG
CAGAGAATTTCATGAAACCGGCTAGTTCTTTGCTTAGCGACAAACATCACGGAGTCCTAATTGCAGGAATCCAGCTTTGTACAGAGCTCTGCAAAGCAAGTGTTGAGGCCCTTGATCATATAAGAAAGTATACAAAGGATTTAGTCCGTGTTCTGAAGAATATGGTCACTAGTGGATATTCTCCTGAGTTTGATGTCGGT
GGAATCACTGATCCTTTTTTGCAAATAAGGGTTCTTCGACTTCTTCGAATTTTGGGACAGGGTGATGCAGATTCAAGTGACATTATGAGTGATATTCTGGCTCAAGTGGCCACCAATATTGAATCCAACAAGAACGCTGGGAATGCAATACTTTATGAATGTGTGCAGACCATCATGGCAATAGAAGCCATAGGTGGTCT
CCGTGTGCTTGCAATTAACATTCTTGGTCGATTTTTGTCAAATCGTGATAATAACATCCGATACGTGGCACTGAATATGCTAATGAAGGCAATCACTGTAGATTTTCAAGCAGTACAAAGGCATCGAGCAACCATTGTAGAATGTGTCAAGGACTCTGATGCCTCAATCAGGAAAAGAGCCCTGGATCTTGTATTCCTCC
TTGTGAACGATAGCAATGTGAAGCCGTTGACAAAAGAATTATTGGAGTACCTGGAAATAAGTGATCCTGAATTCAAGGGTGATCTCACTGCCAAGATCTGCTCCATTGTAGAAAAGTTTGCCCCAAGTAAACTGTGGTATATTGATCAAATGATCAAAGTTCTGACTGAGGCTGGGAGTTATGTCACTGATGAAGTCTGC
TATGCCCTCATTGTTGTGATAAGTAATGCAATGGATCTTCAAGGATATACTGTAAGGTCTCTTTATCGAGTTTGTCAGAATGGGAATGAGCAGGAAAGTCTTCTTCGGGTTACTGTTTGGTGTATTGGGGAGTATGGTGAAATGCTGATAAACCATGTTGGTGAACTTGAGGGCGAGGAACCTTTGACTGTAACAGAGTC
AGATGCGGTGGATGTCCTAGAAGCAGTCTTGAAAGGCTCGAAAGTAGACATGACTACACGTGCAATGGTTCTAACGGCCCTCTTGAAGCTATCATCTCGCTTTCCACCTTGCTCAGAGCGAATTAAAGATTTGATTATTCAGAACAAGGGAAGCCTTGCTCTAGAGTTGCAGCAGAGGTCAATCGAATTTGGCTCCATTC
TTCACAAACACCAAAATCTTAAGACAGCATTGTTGGAGCGAATGCCAGTTTTAGATGAATCTGTATACAGTGGAAAGAAAGCAGATACAGCAGGTGCTGTCCTTGTGGATAGTAAAACTAAAGTTTCAGGAACACCTGCCAACCTTCCAAATGGAGTAAGCAAGCCACCGACAAATGCTCTTATGGACTTGCTTGATTTA
AGTGTGGATGATGTTCCCTCTCCTGCAGTATCTGCTGGGGATTTTCTTCAAGATCTCTTAGGAATTGGTTCTTCCCCAGCTCCAGCATTACCTGGTATTGGCCAGCCTTCTACTGGGAGTGCAGATGTTCTTTTGGATCTTCTATCAATTGGGACACCTCCTGTGCCTGTACAATCAACTGTTACAGCATCAGCCTTAAC
ACCTTCCAGTCAACCAGAGGCGGTTTCTGTTACTCCTTTGGATCCATTATCACAGTTGGCATCATTAGCCTCTTCGGCCTCTCCATCACTGCAAACAGTCACAGCACCTCTTGGTGATATCAAATCTTTTGCAGGTTTGACAATGAATGGAGTTCATGAAGTTAAAAAGGCATCTGTACAAGCTGCTCCTGTAGTTGACT
TGTTAGGAGATTTGAGTCCTGCTCCAGCAGCAACTGATGATGGTGTTCCGACATATCCTCCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCT
GCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCCTTCCTCCCAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCC
TGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCTGTTTGTTTTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATA
TATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTTTTAACTGGGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTT
TATTGCATCTACACAAAATTTATAAAGCATG
>TRINITY_DN111761_c0_g1_i5 from sample A2 / Example unspliced isoform:GAGTCCTGCTCCAGCAGCAACTGgtatgtatgacaaacagttgtaacttctcaaattctcttatccataatagcatcctcctcaatatatgttctttgattatgcatttgttcatggaaaatgcctggaaaggagatgctgtttcattttgaagtttaatgttgtgaaattttacagATGATGGTGTTCCGACATATCCT
CCAATAGTTGCATTCCAGAGCAAATCATTGAAGGTCACTTTTGAGTTCACAAAGCAGCTAGGCAAGCCAGAATTTACATTAGTGCAAGCAAGTTTTACAAATTTGACCTCCAATGCCTTCACAGATTTCATCTTTCAGGCTGCTGTTCCAAAGTTCTTGCAACTCCACTTGGACCCAGCAAGTAGCAACATCCTTCCTCC
CAGCGGTGATGGAACAGTTGTACAACGTTTGAGTGTGAACAACAGTCAGCATGGCCAGAAAAATCTTGCTATGAGAGTACGTATTGCTTACAAAGTGAATGGTCAAGATGTTGTTGACCAAGGACAGGTCAACAATTTTCCTGCAGGTTTGTAGTGAGTACATCTTGTGTCGGGATTTTTTGCATCATTTTCTGTTTGTT
TTATTTTGAAGGCATACGACTGGAAACTGCAGTTACCTAACCGATTGCGGTGTGCCTGAGGATGTAGTAATTATTCTTTGTATATCAGAGTTAGTATTCAAGGTGTCTGTAGGGAAGTTTGGATCCAAAAGTCAAATCATATATGAAATGTTTATTTCATGCTTCTGAAATAAAATCTAGCAGATTTTTTTTTTTAACTG
GGGAAAAGCATCGGTTGTATTTCATGAATGTGTAAGTTACACACCACTAGATGTTGTTGTACAATAATGCAGTTTTTTGAAAGCAAAAAAACTTTTGAGGATTACGGGCATCTTCACCAAAATTTCGTATTGCCCTGATTTTATTGCATCTACACAAAATTTATAAAGCATG