sp|Q0WVL7|GOGC5_ARATH ----> Golgin candidate 5
Intron 1 GTTTGTTTAT ... GTTCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.79 | 75 | 9 | 11 |
| A2 | 25.68 | 55 | 0 | 19 |
| A3 | 28.23 | 89 | 2 | 35 |
| A4 | 24.56 | 43 | 0 | 14 |
| A5 | 21.05 | 15 | 0 | 4 |
| A6 | 35.29 | 110 | 0 | 60 |
| A7 | 29.94 | 234 | 0 | 100 |
| A8 | 32.43 | 250 | 0 | 120 |
| A9 | 33.11 | 196 | 0 | 97 |
| A10 | 30.37 | 149 | 0 | 65 |
>TRINITY_DN126713_c0_g1_i5 from sample A1 / Example spliced isoformAATTATCATAGCATTAAGGCCGTTTGCATTGGGTGATGGTATTTAATATTTATGTAAATAGTTGATGGTGAGAAAATTATCAATTGTGCCATTTAAGAACATTTTTCCCCTCATTTTTAACATTCTTTCATTATTGCTAACTGCCTTGCATATGAGTATGCTTTGGTGGCATTTATGTGTCTACTTTGGTTTTTATATTT
CTTGTCAAATGGATTATGGATGAAATTCAAATAACTGCCCTGAAAAGGAACAATATGTTTATTGTATATATCCGAGGAACTGAAAATGCTATGATGAAATAAAGACTTGCACAGATATTCTAGAAGGCTAAAATTGTTTCTGGAGTTTGGATCCTTATTCTCACCACAAACATCATACAGGAGATAGAGCGAGAGAGGAC
TGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTAAGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGG
TCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGAGTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAG
TCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTT
GAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGTCACTTTTGTTTATTTACTTGGGTTGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTA
AATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTAGTCAAGTGGGTATCCTCTCTTATTTGCTTCAGATATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGA
AAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATG
TTTGTGGATTTGAAGTGGC
>TRINITY_DN126713_c0_g1_i4 from sample A1 / Example unspliced isoform:ACTCAGAATTACACTTATGTAATTGGAAAGGACTAGTGCTGTAATGATGCACTGAAGTAGAGGCCGCCTTTATTGTTATTTTATACCGTGCTTTTATTTGAATCTTTTTGTTTGCATCTATTTTATCTCATATTAATGCAATTCTTGCAGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAAT
GACTAATGAGgtttgtttatattttgtcaagtgtaggattcttgaagtatgattgaataccaagaaaatctgtttagatataatgaagtctgattgaattatttttgcatctaaacatctatgcaataattttgtggttcattcagTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTG
GAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTC
CGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGTCACTTTTGTTTATTTACTTGGGTTGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGA
TTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTAGTCAAGTGGGTATCCTCTCTTATTTGCTTCAGATATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCT
TCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATGTTTGTGGATTTGAAGTGGC
Intron 2 GTTTGTTTTG ... ACAAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.74 | 97 | 25 | 14 |
| A2 | 14.42 | 89 | 15 | 15 |
| A3 | 21.13 | 56 | 18 | 12 |
| A4 | 9.3 | 39 | 3 | 5 |
| A5 | 15.79 | 8 | 2 | 1 |
| A6 | 12.5 | 28 | 0 | 8 |
| A7 | 14.39 | 119 | 18 | 22 |
| A8 | 11.44 | 89 | 8 | 15 |
| A9 | 12.56 | 87 | 10 | 15 |
| A10 | 17.27 | 103 | 22 | 21 |
>TRINITY_DN111909_c1_g1_i6 from sample A3 / Example spliced isoformGCTCACAAAAGCAAAAGACAACATATTCCTGGAATCTTTAACATGATCAAGACTTCAACAGCGCGGCGCTATTGTGTTTGCTTATCTGGAAAGGAAAGATAAGTGCAGGGCACATACAAAGTGCCAAAGGAAAGTAACACGGATTAAGGATTCAGAGTCAATCATTCATTTATTTTTCCCTGTTACAATTCAAATTCAAT
TGCGAAGAATTTGGGAGATCCGTAGGGTTTCAGTCTTATACTTTGAAAGAGTCCGTCTGCAATTTCCGGATCTGATCACTAACAGATAGATGATTGTCTGCAACATAGAAAGCTAATGGTGGGTTCATAGACTCCTCAAAAAGGTGGGGTTGCCGGTGCCCCTCTAAAGCGAAGCAGGAATAATGGCGTGGTTGAACAGA
GTATCGTTGGGGAATTTCCCGGATCTAGCCGGTGCTGTCACCAAGTTCAGCGAAAGTGTCAAGAACATTGAAAGAAATCTTGGACTCGAGGACAACCTCGATGTTCAGGAAGAAGAAGTACGGCCTTCAACAGACAAAAGCGTGTTTTTTGATCCAGTCATGAACCTAATGAAGCAGAGGGATGCAGAAGACGATAGTGT
TGTCCAAGAAGCTGCGCAATCATCACAAAATGTTTCAGAAGAAACATTAAACAGGTCATCTACTGAAAGCCCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGG
ATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTC
TCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGA
GCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTG
ACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAAT
ACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTAT
GGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTC
AAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGC
CAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAA
TTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATC
TTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAGAAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGTGGTACCAATTCATATTATTTATGTCTGCATGAGAATGGGAAATGTGATTCCCCTCTCACGTGACAAG
AGAAAATTATTAATTATCATAGCATTAAGGCCGTTTGCATTGGGTGATGGTATTTAATATTTATGTAAATAGTTGATGGTGAGAAAATTATCAATTGTGCCATTTAAGAACATTTTTCCCCTCATTTTTAACATTCTTTCATTATTGCTAACTGCCTTGCATATGAATATGCTTTGGTGGCATTTATGTGTCTACTTTGG
TTTTTATATTTCTTGTCAAATGGATTATGGATGAAATTCAAATAACTGCCCTGAAAAGGAACAATATGTTTATTGTATATATCCGAGGAACTGAAAATGCTATGATGAAATAAAGACTTGCACAGATATTCTAGAAGGCG
>TRINITY_DN111909_c1_g1_i1 from sample A3 / Example unspliced isoform:GCTCCTTTGACACAAATATATAAAATTCAAATCCTTTTGACATCCCTATATATAAATTTATAATCATAAATTTTATTTATGAAATGTTGTTGACACAGTAGCTATTTTTCAGCTATTGTGTTTGCTTATCTGGAAAGGAAAGATAAGTGCAGGGCACATACAAAGTGCCAAAGGAAAGTAACACGGATTAAGGATTCAGA
GTCAAATCATTCATTTATTTTTCCCTGTTACAATTCAAATTCAATTGCGAAGAATTTGGGAGATCCGTAGGGTTTCAGTCTTATACTTTGAAAGAGTCCGTCTGCAATTTCCGGATCTGATCACTAACAGATAGATGATTGTCTGCAACATAGAAAGCTAATGGTGGGTTCATAGACTCCTCAAAAAGGTGGGGTTGCCG
GTGCCCCTCTAAAGCGAAGCAGGAATAATGGCGTGGTTGAACAGAGTATCGTTGGGGAATTTCCCGGATCTAGCCGGTGCTGTCACCAAGTTCAGCGAAAGTGTCAAGAACATTGAAAGAAATCTTGGACTCGAGGACAACCTCGATGTTCAGGAAGAAGAAGTACGGCCTTCAACAGACAAAAGCGTGTTTTTTGATCC
AGTCATGAACCTAATGAAGCAGAGGGATGCAGAAGACGATAGTGTTGTCCAAGAAGCTGCGCAATCATCACAAAATGTTTCAGAAGAAACATTAAACAGGTCATCTACTGAAAGCCCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAAC
CCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAA
CAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTT
TTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTT
CTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCA
GATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGC
TGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATA
AGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATA
CAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGC
AGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGgtttgttttgttagctttaatttcttagatggggcacaaggtc
atgttcctttagtgtctacgcagctggagcattttgatgtacttccacagtgcttattagccgtttttgggtactggtagccattaacataatcagttattctttctttcctattctctttgtgattcaccattactctcatcaaaagaataaacaaatcccaaagcacactgcacaggcattaaaatctaggttgattg
tgaacaagtgcagGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAGAAATGCGAAATCAGCATAAGCATGAAATGGTGG
AGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTAAGGCGATTTTCAAGTGCTACAAGCATTGGTAGC
ATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGAGTTATCTTCTTACATGGCTCGTCTGGCCTCCCT
GGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCA
AGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGTCACTTTTGTTTATTTACTTGGGTCGAAGGCTTA
TGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTAGTCAAGTGGGTATCCTCTTTTATTTGCTTCAGA
TATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAA
AGAG
Intron 3 GTTCTTTCTT ... CAATTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.9 | 83 | 3 | 9 |
| A2 | 4.25 | 69 | 1 | 3 |
| A3 | 5.68 | 50.3 | 1 | 3 |
| A4 | 0 | 23.8 | 0 | 0 |
| A5 | 5.04 | 19 | 2 | 1 |
| A6 | 0 | 16.8 | 0 | 0 |
| A7 | 1.2 | 86.8 | 0 | 1 |
| A8 | 0 | 62 | 0 | 0 |
| A9 | 0 | 74.5 | 0 | 0 |
| A10 | 6.89 | 83 | 0 | 6 |
>TRINITY_DN126713_c0_g1_i13 from sample A1 / Example spliced isoformCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATC
AAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTC
TCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGG
GAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGG
TTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTA
CAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATAC
ACTTCGACGAGAACAGAGTAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTC
AGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCA
CTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAAC
TGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAAC
GTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTGTTTTGTTAGCTTTAATTTCTTAGATGGGGCACAAGGTCATGTTCCTTTAGTGTCTACGCAGCTGGAGCATTTTGATGTACTTCCACAGTGCTTATTAGCCGTTTTTGGGTACTGGTAGCCATTAACATAATCAGTTATTCTTTCTTTCCTA
TTCTCTTTGTGATTCACCATTACTCTCATCAAAAGAATAAACAAATCCCAAAGCACACTGCACAGGCATTAAAATCTAGGTTGATTGTGAACAAGTGCAGGTTTCCTGTCAGAGGGCTGAACAAG
>TRINITY_DN126713_c0_g1_i1 from sample A1 / Example unspliced isoform:GGCCCTTAATTCACGACTTCAGgttctttctttgtgcaaatatattttctggagttccaaaagagtcaacagttactcaattttgaatatagcttgtttgaaattagtttgacttttgggaaattacaattaacagGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAACGTCTATCTC
AGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTT
Intron 4 GTCTGGTGTT ... TGATGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.92 | 118.3 | 4 | 13 |
| A2 | 7.31 | 76.8 | 0 | 6 |
| A3 | 2.33 | 85.5 | 1 | 2 |
| A4 | 5.44 | 36.2 | 0 | 2 |
| A5 | 5.94 | 15.8 | 1 | 1 |
| A6 | 7.68 | 12.8 | 0 | 1 |
| A7 | 1.52 | 131.7 | 0 | 2 |
| A8 | 0 | 49.2 | 0 | 0 |
| A9 | 2.37 | 83.5 | 0 | 2 |
| A10 | 1.47 | 68 | 0 | 1 |
>TRINITY_DN126713_c0_g1_i13 from sample A1 / Example spliced isoformCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATC
AAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTC
TCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGG
GAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGG
TTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTA
CAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATAC
ACTTCGACGAGAACAGAGTAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTC
AGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCA
CTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAAC
TGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAAC
GTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTGTTTTGTTAGCTTTAATTTCTTAGATGGGGCACAAGGTCATGTTCCTTTAGTGTCTACGCAGCTGGAGCATTTTGATGTACTTCCACAGTGCTTATTAGCCGTTTTTGGGTACTGGTAGCCATTAACATAATCAGTTATTCTTTCTTTCCTA
TTCTCTTTGTGATTCACCATTACTCTCATCAAAAGAATAAACAAATCCCAAAGCACACTGCACAGGCATTAAAATCTAGGTTGATTGTGAACAAGTGCAGGTTTCCTGTCAGAGGGCTGAACAAG
>TRINITY_DN126713_c0_g1_i8 from sample A1 / Example unspliced isoform:TCATCTTCAGAAACGTTGCCAGgtctggtgttatcaccattgattctaccattgatatataagaccaaaccacataagtgatttgtgattgatcaaggttgggttctatgatgtgatatagttatagctgatgtgtagGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACT
GCGGCAAATTGAAGCAATGCAGGTTCTTTCTATTTCAAAGCTAAAAGTTTGTCTCCTGCTGAGTTTATTATTATTATTTTTTAATCTTTTCGAAATGATAAGATGAATTCATCATTTTATCAACAGGAGAAGATGGACAAGAGAAGTGACAAAAAGATTTGTACACAATAAAAATAATCTTTATTTTTAAATGTTTTGAT
CACTATATGCTGCCTTTTAAATCAGTTATCAGTGGTGTAGTTTGTAGTTTCCATTCATGTTGGTCCTATATCCATAAACAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGA
ACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAG
AAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTA
AGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGA
GTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGT
TAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGT
CACTTTTGTTTATTTACTTGGGTTGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTA
GTCAAGTGGGTATCCTCTCTTATTTGCTTCAGATATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGT
TACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATGTTTGTGGATTTGAAGTGGC
Intron 5 GTAGGTATGA ... ATTACTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 108 | 24 | 45.3 |
| A2 | 27.2 | 91 | 34 | 21.7 |
| A3 | 25 | 81 | 27 | 27.5 |
| A4 | 30.3 | 46 | 20 | 2 |
| A5 | 19.44 | 29 | 7 | 9.5 |
| A6 | 40 | 3 | 2 | 0.8 |
| A7 | 20.45 | 70 | 18 | 9.5 |
| A8 | 26.79 | 41 | 15 | 4.2 |
| A9 | 17.86 | 46 | 10 | 4.2 |
| A10 | 23.29 | 56 | 17 | 9.2 |
>TRINITY_DN126713_c0_g1_i13 from sample A1 / Example spliced isoformCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATC
AAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTC
TCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGG
GAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGG
TTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTA
CAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATAC
ACTTCGACGAGAACAGAGTAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTC
AGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCA
CTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAAC
TGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAAC
GTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTGTTTTGTTAGCTTTAATTTCTTAGATGGGGCACAAGGTCATGTTCCTTTAGTGTCTACGCAGCTGGAGCATTTTGATGTACTTCCACAGTGCTTATTAGCCGTTTTTGGGTACTGGTAGCCATTAACATAATCAGTTATTCTTTCTTTCCTA
TTCTCTTTGTGATTCACCATTACTCTCATCAAAAGAATAAACAAATCCCAAAGCACACTGCACAGGCATTAAAATCTAGGTTGATTGTGAACAAGTGCAGGTTTCCTGTCAGAGGGCTGAACAAG
>TRINITY_DN126713_c0_g1_i6 from sample A1 / Example unspliced isoform:GTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGA
TGCTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGG
ATTTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAAT
AACTATCAGGTTGGTGACCAAGCTACGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGC
AGAGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGgtaggtatgaatcactcaactatctggctgtaatgttgtgctctgcaatatgactatgttctgaggagttcggttg
tgtttttttccagttttcttccctttacttaaccattttttttggcacatgtcatgtccattaagataattgagtttgcacttgttttcaactgcaatgctgcttgtaaattgattctaacattctgatcatattgtggtgatgtgtatggctttttctcaaatttctgaattactatagAAGAGATCTCCAGAGGCAGA
GTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAA
TTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAA
GCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCT
TAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCG
TTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAA
AATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAGAAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGC
TGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTAAGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGA
CAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGAGTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTG
CCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTG
GATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGTCACTTTTGTTTATTTACTTGGGTTGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGT
GCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTAGTCAAGTGGGTATCCTCTCTTATTTGCTTCAGATATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAAC
GCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATGTTTGTGGATTTGAAGTGGC
Intron 6 GTGAGAAGCT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 5 | 0 | 5 |
| A2 | 50 | 5 | 0 | 5 |
| A3 | 62.5 | 6 | 0 | 10 |
| A4 | 57.89 | 8 | 2 | 11 |
| A5 | 50 | 2 | 0 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 50 | 4 | 0 | 4 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 1 | 0 | 1 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN104832_c0_g4_i7 from sample A4 / Example spliced isoformCTTCAACAGCGCGGCGCTATTGTGTTTGCTTATCTGGAAAGGAAAGATAAGTGCAGGGCACATACAAAGTGCCAAAGGAAAGTAACACGGATTAAGGATTCAGAGTCAAATCATTCATTTATTTTTCCCTGTTACAATTCAAATTCAATTGCGAAGAATTTGGGAGATCCGTAGGGTTTCAGTCTTATACTTTGAAAGAG
TCCGTCTGCAATTTCCGGATCTGATCACTAACAGATAGATGATTGTCTGCAACATAGAAAGCTAATGGTGGGTTCATAGACTCCTCAAAAAGGTGGGGTTGCCGGTGCCCCTCTAAAGCGAAGCAGGAATAATGGCGTGGTTGAACAGAGTATCGTTGGGGAATTTCCCGGATCTAGCCGGTGCTGTCACCAAGTTCAGC
GAAAGTGTCAAGAACATTGAAAGAAATCTTGGACTCGAGGACAACCTCGATGTTCAGGAAGAAGAAGTACGGCCTTCAACAGACAAAAGCGTGTTTTTTGATCCAGTCATGAACCTAATGAAGCAGAGGGATGCAGAAGACGATAGTGTTGTCCAAGAAGCTGCGCAATCATCACAAAATGTTTCAGAAGAAACATTAAA
CAGGTCATCTACTGAAAGCCCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATC
AAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAG
GAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATAT
TACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTAGGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTT
CTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTA
CGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGAT
GAGAAAGTTACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCACTAAATGAAG
CAAAGGATGCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAG
AAACGTTGCCAGGTCTGGTGTTATCACAATTGATTCTACCATTGATATATAAGACCAAACCACATAAGTGATTTGTGAT
>TRINITY_DN104832_c0_g4_i5 from sample A4 / Example unspliced isoform:CCAACCCAAGTACTGGTACAAGCTCACAAAAGCAAAAGACAACATATTCCTGGAATCTTTAACATGATCAAGACTTCAACAGCGCGGCGgtgagaagctcctttgacacaaatatataaaattcaaatccttttgacatccctatatataaatttataatcataaattttatttatgaaatgttgttgacacagtagcta
tttttcagCTATTGTGTTTGCTTATCTGGAAAGGAAAGATAAGTGCAGGGCACATACAAAGTGCCAAAGGAAAGTAACACGGATTAAGGATTCAGAGTCAAATCATTCATTTATTTTTCCCTGTTACAATTCAAATTCAATTGCGAAGAATTTGGGAGATCCGTAGGGTTTCAGTCTTATACTTTGAAAGAGTCCGTCTG
CAATTTCCGGATCTGATCACTAACAGATAGATGATTGTCTGCAACATAGAAAGCTAATGGTGGGTTCATAGACTCCTCAAAAAGGTGGGGTTGCCGGTGCCCCTCTAAAGCGAAGCAGGAATAATGGCGTGGTTGAACAGAGTATCGTTGGGGAATTTCCCGGATCTAGCCGGTGCTGTCACCAAGTTCAGCGAAAGTGT
CAAGAACATTGAAAGAAATCTTGGACTCGAGGACAACCTCGATGTTCAGGAAGAAGAAGTACGGCCTTCAACAGACAAAAGCGTGTTTTTTGATCCAGTCATGAACCTAATGAAGCAGAGGGATGCAGAAGACGATAGTGTTGTCCAAGAAGCTGCGCAATCATCACAAAATGTTTCAGAAGAAACATTAAACAGGTCAT
CTACTGAAAGCCCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAG
CTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGT
GGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTG
ATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTAGGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATT
GGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGA
ATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGT
TACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCACTAAATGAAGCAAAGGAT
GCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTG
CCAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTA
TGAATGAACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAA
ATAAAAGAAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAA
TCACCTAAGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGG
ATGGGGAGTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGAT
GAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTG
GTCTGGTCACTTTTGTTTATTTACTTGGGTCGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAA
CTTACTAGTCAAGTGGGTATCCTCTTTTATTTGCTTCAGATATTCCTTTTGTATATTTGGTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCT
ACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAG
Intron 7 GTTCTTTCTA ... CCATAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.21 | 86 | 23.8 | 26 |
| A2 | 18.69 | 87 | 20.4 | 20 |
| A3 | 21.95 | 64 | 12.6 | 18 |
| A4 | 12.77 | 41 | 8.5 | 6 |
| A5 | 25 | 15 | 5.4 | 5 |
| A6 | 29.63 | 19 | 3.2 | 8 |
| A7 | 7.56 | 110 | 22.1 | 9 |
| A8 | 23.38 | 59 | 8.6 | 18 |
| A9 | 21.55 | 91 | 24.1 | 25 |
| A10 | 12.66 | 69 | 10.2 | 10 |
>TRINITY_DN126713_c0_g1_i13 from sample A1 / Example spliced isoformCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACTGAAGTTGTTTCTAAGGACGTTGCTTCTCAACCACAGGAGCAAGATC
AAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATGCTCAGACAGAGGGCAGACAAGAAGTC
TCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGATTTGCAAGAAGATGTGGCCCAGACCGG
GAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAACTATCAGGTTGGTGACCAAGCTACGG
TTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAGAGATGAAAATAATGGAAGCAGCTTTA
CAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTATATACGTTGACAAAGGAGAGAGATAC
ACTTCGACGAGAACAGAGTAGGAAGGTATATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTC
AGATTCGGTTTTCAGAAGAAGAGAAGCAACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCA
CTTGCAGAGTCACGTGCAAATAGCGAAGCTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAAC
TGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAAC
GTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTGTTTTGTTAGCTTTAATTTCTTAGATGGGGCACAAGGTCATGTTCCTTTAGTGTCTACGCAGCTGGAGCATTTTGATGTACTTCCACAGTGCTTATTAGCCGTTTTTGGGTACTGGTAGCCATTAACATAATCAGTTATTCTTTCTTTCCTA
TTCTCTTTGTGATTCACCATTACTCTCATCAAAAGAATAAACAAATCCCAAAGCACACTGCACAGGCATTAAAATCTAGGTTGATTGTGAACAAGTGCAGGTTTCCTGTCAGAGGGCTGAACAAG
>TRINITY_DN126713_c0_g1_i8 from sample A1 / Example unspliced isoform:TCATCTTCAGAAACGTTGCCAGGTCTGGTGTTATCACCATTGATTCTACCATTGATATATAAGACCAAACCACATAAGTGATTTGTGATTGATCAAGGTTGGGTTCTATGATGTGATATAGTTATAGCTGATGTGTAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATGAGAGTACCTGAGTCCACAAGACCACTACT
GCGGCAAATTGAAGCAATGCAGgttctttctatttcaaagctaaaagtttgtctcctgctgagtttattattattattttttaatcttttcgaaatgataagatgaattcatcattttatcaacaggagaagatggacaagagaagtgacaaaaagatttgtacacaataaaaataatctttatttttaaatgttttgat
cactatatgctgccttttaaatcagttatcagtggtgtagtttgtagtttccattcatgttggtcctatatccataaacagGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGA
ACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAG
AAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTA
AGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGA
GTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGT
TAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGT
CACTTTTGTTTATTTACTTGGGTTGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTA
GTCAAGTGGGTATCCTCTCTTATTTGCTTCAGATATTCCTTTTGTATATTTGTTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGT
TACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATGTTTGTGGATTTGAAGTGGC
Intron 8 GTTCTTTCTA ... TTATCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.2 | 37 | 15 | 12 |
| A2 | 19.66 | 36 | 12 | 4 |
| A3 | 29.84 | 17 | 8.7 | 5 |
| A4 | 41.67 | 7 | 6 | 6 |
| A5 | 37.39 | 6 | 4 | 2 |
| A6 | 29.89 | 5 | 2.3 | 4 |
| A7 | 15.38 | 42 | 12 | 0 |
| A8 | 14.58 | 18 | 4.7 | 2 |
| A9 | 23.18 | 36 | 14.7 | 5 |
| A10 | 17.44 | 18 | 5.7 | 7 |
>TRINITY_DN42351_c0_g3_i1 from sample A8 / Example spliced isoformGATAAGTGCAGGGCACATACAAAGTGCCAAAGGAAAGTAACACGGATTAAGGATTCAGAGTCAAATCATTCATTTATTTTTCCCTGTTACAATTCAAATTCAATTGCGAAGAATTTGGGAGATCCGTAGGGTTTCAGTCTTATACTTTGAAAGAGTCCGTCTGCAATTTCCGGATCTGATCACTAACAGATAGATGATTG
TCTGCAACATAGAAAGCTAATGGTGGGTTCATAGACTCCTCAAAAAGGTGGGGTTGCCGGTGCCCCTCTAAAGCGAAGCAGGAATAATGGCGTGGTTGAACAGAGTATCGTTGGGGAATTTCCCGGATCTAGCCGGTGCTGTCACCAAGTTCAGCGAAAGTGTCAAGAACATTGAAAGAAATCTTGGACTCGAGGACAAC
CTCGATGTTCAGGAAGAAGAAGTACGGCCTTCAACAGACAAAAGCGTGTTTTTTGATCCAGTCATGAACCTAATGAAGCAGAGGGATGCAGAAGACGATAGTGTTGTCCAAGAAGCTGCGCAATCATCACAAAATGTTTCAGAAGAAACATTAAACAGGTCATCTACTGAAAGCCCCACTGAAGTTGTTTCTAAGGACGT
TGCTTCTCAACCACAGGAGCAAGATCAAACACCTGAAGGCAGGGATCAGGATCAGCAACCCTGTTTGTCAATACAACAAGATCAAAATGCTTCTTCAGCCTTGGATCAAGATGAGCATCCAAGTCCACCAAAGGGGCTAGAACAGGATGAACATCAAAAGGAGCTGGAACACAATCAACATCTATCTTCTTCTGAAGATG
CTCAGACAGAGGGCAGACAAGAAGTCTCAGAAGTGATTCTTCCTAGCAAAGGAGAGGAACAGGAGGAGCCACAGTATGCAGAAGCAGAGCATTCAGAAGTATTCTCGGCAGGAAATGACTTCTTAAAGAGTCCAGAGGTGGTTGAAAGAGTGGAGGAAGTTGTGGCAGCTCAGACAGAGGGAAAATCAGAGGCAAGGGAT
TTGCAAGAAGATGTGGCCCAGACCGGGAGTCCTTTTCAACAATCCGCAGAAAATGTTTTTTTGCCATATGAGAAAATAGTGAATGATTCAGCAGTTTCTTCTGAGCCTGAACCTATCAATCTGTCATCGGTTACTCATGACATTAAAGGTGATATTACAGCTGATGCCAATGATAGTGATGAGTTACATATGATCAATAA
CTATCAGGTTGGTGACCAAGCTACGGTTCCTGGTAATGGTATCCTTGATAGAACGCCTTCTGCCACAGCTGGGCAGATGGAAGCTCTAATAAAAAAGGATGCTGACATCCAACAGTTTCACTCAGAATCGCTTGTTAGTCAACACTCGGCTGTTTCTCTCATTGGAGAAAGTGAGTCTGAAGTTGAGAAGCTCAAGGCAG
AGATGAAAATAATGGAAGCAGCTTTACAAGGTGCTGCAAGACAGGCGCAGGCAAAGGCAGATGATATTTCAAGGTTGTTGATTGAAAATGAACAACTCAGAAATACAATTGACGATCTGAAGAAGAGATCTCCAGAGGCAGAGTCTGATGCACTACGGGATGAATACCAGCAACGCCTTGGAGCCCTCGAAAGGAAGGTA
TATACGTTGACAAAGGAGAGAGATACACTTCGACGAGAACAGAGTAGGAAAAGTGATGCTGCTGCTCTCTTGAAAGAAAAGGATGAAATTATCAAGCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAGAAACAAGCTGCACAAGAAGCTCAGATGAGAAAGTTACGAGCTCAGATTCGGTTTTCAGAAGAAGAGAAGCA
ACGGTTGAATTCCAAGTTACAGGTTGAAGAAGCAAAGGTGGAAAGTATTAAAAAGGATAAGGCGGCAACAGAAAAGGCTTTGCAAGAAGCTGTTGAAAGTAGTCAAGCAGAACTGGCTGCACAAAAGGAATTCTACACAAATGCTCTAAATGAAGCAAAGGATGCACAGGCACTTGCAGAGTCACGTGCAAATAGCGAAG
CTAAAACAGAGCTTGAGCATCGTTTACGTGAAGCTGGAGAACGTGAGGCAGCACTTATACAAGCACTTGAAGAGTTAAGGGAGACTCTTAGCAATACAGAGCGCCAGGCAGCCTCTCGTGAAGACAAATTGCGAAGTGAGATTGATCATCTTCAGAAACGTTGCCAGGCAACTGAAATGCGTTATGAAGAGTTAGTAATG
AGAGTACCTGAGTCCACAAGACCACTACTGCGGCAAATTGAAGCAATGCAGGAGAAGATGGACAAGAGAAGTGACAAAAAGATTTGTACACAATAAAAATAATCTTTATTTTTAAATGTTTTGATCACTATATGCTGCCTTTTAAATCAGTTATCAGTGGTGTAGTTTGTAGTTTCCATTCATGTTGGTCCTATATCCAT
AAACAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGAACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACA
ACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAGAAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGC
GAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTAAGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCC
ACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGAGTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAAT
GACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGTTAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGA
TCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGTCACTTTTGTTTATTTACTTGGGTCGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCAT
AGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTAGTCAAGTGGGTATCCTCTTTTATTTGCTTCAGATATTCCTTTTGTATATTTGGTTGAACTCCTCCTTGATGTTCC
ATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGTTACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTA
CAACTCCATGTTTGTGGATTTGAAGTGGTCACGTAAAATGTAATATTATACTATATTTTAATTTTATTTATTTGGAAAA
>TRINITY_DN42351_c0_g3_i2 from sample A8 / Example unspliced isoform:GCGGCAAATTGAAGCAATGCAGgttctttctatttcaaagttaaaagtttgtctcctgctgagtttattattattattttttaatcttttcgaaatgataagatgaattcatcattttatcaacagGAGAAGATGGACAAGAGAAGTGACAAAAAGATTTGTACACAATAAAAATAATCTTTATTTTTAAATGTTTTGAT
CACTATATGCTGCCTTTTAAATCAGTTATCAGTGGTGTAGTTTGTAGTTTCCATTCATGTTGGTCCTATATCCATAAACAGGAAAGTGCAGCAATGCGTGCTGAAGCATGGTCTGGCGTTGAGAGGGCCCTTAATTCACGACTTCAGGAAGCAGAGGCAAAAGCTGCATCTGCAGAAGAAAGAGAAAGAGCTATGAATGA
ACGTCTATCTCAGACATTATCACGAATGGCAGTTTTAGAAGCTCAGGTTTCCTGTCAGAGGGCTGAGCAAGCACAACTTACTCGCTCATTAGAGAAGGAAAGACAGAGGGCAGCTGAAAATCGACAAGAATATCTTGCAGCGGTAGAAAAAGCAGCCAGTCAGGAAGGTCGTGCCAAGCAACTTGAACAAGAAATAAAAG
AAATGCGAAATCAGCATAAGCATGAAATGGTGGAGGAAATGACACGGCGAGAACTCCTTGAGCAGGAGATAGAGCGAGAGAGGACTGCCAGATTAGATCTTGAAAAGACAGTTCGTGCTGAAGCATGGCTAGCATCAGAAAAAAATGCTGCTTCTAAATATACAAACACTTATCTGGAGCATGGAGTGAACAATCACCTA
AGGCGATTTTCAAGTGCTACAAGCATTGGTAGCATGGAGGAGAGCTTCTACTTACAGGCTTCATTGGATTCTTCCACAGAACAGGTCCTTCCAGATAGGAAAAGTACAAGCGAAGTGACAGGATCACCTTATTTTGGAAAAAGCATCATGCCAACAACCCTTGAGCATCTGGAAACTACACTTCGTCAAAAGGATGGGGA
GTTATCTTCTTACATGGCTCGTCTGGCCTCCCTGGAATCAATACGGGATTCTTTAGCTGAGGAGTTGGTGAAAATGACTAATGAGTCTGAAAAATTACGCATAGAGGTAGCTACTTTGCCTGGATTGAAGGCAGAGTTGGAAGCATTAAGGCGTCGCCATACATCAGCTTTAGAGTTAATGGGTGAGCGTGATGAGGAGT
TAGAAGAACTTCGGGCTGACATTGCTGATGTCAAGCAAATGTACCGAGAACAAGTGGACATGCTTGTAAGCCAGATCGAGAAGTTGAGTTCTTCACTTGGCAGCAAATGATATAATTGGATTTGCAAGGTCAGAGAGTCCGGTGATGAGTAGATATCAGACATTAAAATGTATGTGGCACTCGGATTGGTTTGGTCTGGT
CACTTTTGTTTATTTACTTGGGTCGAAGGCTTATGCTTTTGATTGGAGCCTACAAACAAATATGGACCATATCATAGACAATGTAAATGTATGATTCTTCTCTTCATAATCAGCAAGTGCTTGTCTCCCATTTTTTTGATTTAAACATCAAGATAAGAAAGCCTAGTTTTATGCTTAGCAGTTGGCAATAAAACTTACTA
GTCAAGTGGGTATCCTCTTTTATTTGCTTCAGATATTCCTTTTGTATATTTGGTTGAACTCCTCCTTGATGTTCCATCAGAATGAAAATCAGCAAAATCCTCCTATTATTCATTTAACGCACTTTAGTTTAACTAATCTTCTGTAAGTGAATCCCATAAATTAGTAGTGGCATGGTCAAGGATGCTGTACTCTACCCTGT
TACTTATCAGTCAAACTTTAGCGTTAATTGAAAAGAGTATGAAGTGTAAGTTTTGTAACTTGATGATTACAGTTACAACTCCATGTTTGTGGATTTGAAGTGGTCACGTAAAATGTAATATTATACTATATTTTAATTTTATTTATTTGGAAAA