sp|O82413|SYHM_ARATH ----> Histidine--tRNA ligase, chloroplastic/mitochondrial
Intron 1 GTAATTGTCT ... GGATAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.67 | 4 | 5 | 26 |
| A2 | 68.57 | 22 | 21.5 | 48 |
| A3 | 75.38 | 16 | 4 | 49 |
| A4 | 71.32 | 18.5 | 7 | 46 |
| A5 | 58.82 | 14 | 3 | 20 |
| A6 | 80 | 4 | 0 | 16 |
| A7 | 73.33 | 20 | 10.5 | 55 |
| A8 | 77.14 | 8 | 2 | 27 |
| A9 | 77.94 | 15 | 10 | 53 |
| A10 | 63.33 | 33 | 7 | 57 |
>TRINITY_DN45614_c1_g2_i2 from sample A7 / Example spliced isoformATTTTTTTCAACTAATGGAAAAGCTATGTTTAACGACGAGCTTTGATGCCATGGCTAAACGTATTGATCCCTCGTGAACTTAAAAAAGAGATACGATGTGAGCCCAATTTCAATCCATTGGTCAAGAAAAGATGTAAACAGGTTTTCAACGGAGCAGATAGCACTATCGCCTCATTATCAAATGGCACCTGTATGTGGCG
CGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGATGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGTCTCTGCACATCTCAGGCG
AATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGGAGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAATTGGCTTTT
TCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTCGGGTGGTTATGCAAAAGG
GGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTG
GGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATC
ATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAG
GTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGTGGTTTTGGTTTCGGAGATGCTGTCATTGTGGAATTGCTAAGGGAGAAAAAATTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGTAGCTGCCATGGTGGCATCCAATTTA
CGAAACAGAGGGCGCGTTGTGGATCTTATTCTAGAGGACAGACGCCTGAAATGGGCTTTTAAGCATGCAGAAAGAGTTAATGCAAAGAGGTTGTTTCTTGTCGGGGATGTTGAGTGGGAACGTGGTGCTGTGCGTGTAAAAGATCTTGCAACCAGAGAAGAATCTGATATGCTGATTAGTGATTTATTATAAAATTATAT
CTTTCATCATTTATTTCTTCAGCATAACATCTGATCATATATACTGTCTTGCAAAATTTTCAAAGGGGGAAAGCAATCTTGCCTATTTTTGGTTCCTTGGATCCTAAGATATATATGTGCCTAGAGTTCATGAACATTAAGATTGGAGAAATAACATGTTAGAGAGGTTGGAATGGAAAAGGCAGTTATTGGCTGGTTGT
AGACAAATACATGAAAGAAGATACATAAAAACTGTGTATTATGAGATAATTGCAGATATGCAAAAATAGATCCTAAACTTGTATAAGATTATGGACAGAAAGTTGAGAAGATAAAATCACAGAAGACATAGGTGGATTTTTTTTATTGATTCCACTAGAAGAGGATCTCACAACTCCAATAGTTTTCCAAGTTGGTGCAT
AGGGAGGTAAGTGATGCTCTTTATTGCAGAACTGGGTAGAGTTGGGAAAGTGAAGACATTTCTACACTTACCAGAGGCTGGTATTTCAAATAAACTCAGTAAAGCATCCTCTGGCACGAATCTCCAAAATAACCATTCAGCACGCTTGGGGGCTTTAAAAGAAGAAGGATGTCTGTAATATCTGAAACTCTACTTGGTTT
CAAGCCATCAATGTAATGTTCCTCCAAATTTGATCTCGAGTTGTCTCAATATGTATATTGCAGCCTCAAAATTAGTGCTTTCTTGGTGCATAATAGCAGTATATCTAACAATACCTAAATTGCAAAATTTACTGGGCTCCTCTCATGTAAAACACTTGGCATTCAAAATGCTTAGCTTTTGAATTTCTGAATGTTACAGA
AGCTACACACAATTGGTTTCTTGAGATTATTTATATTTAAAAATCTGATCTTCCCATTTTAAATCTGCAATTATATTTGTAATATTTCTGGGTACC
>TRINITY_DN45614_c1_g2_i3 from sample A7 / Example unspliced isoform:GAAAAGATGTAAACAGgtaattgtcttgcaaatttgacactgtaaaagtaggatcaggaaaataatattggggagttatttcacaagtagcagcgatggtaaaggttttgaggccatttgaggcacattcccattcattcaggttttggataggcagGTTTTCAACGGAGCAGATAGCACTATCGCCTCATTATCAAATG
GCACCTGTATGTGGCGCGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGATGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGTCT
CTGCACATCTCAGGCGAATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGGAGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCGGC
TTCGCAATTGGCTTTTTCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTCGG
GTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAAT
TACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATG
CTTTGTCATTAAGATCATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAACTT
CGAGCAATATGTGGAGGTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGTGGTTTTGGTTTCGGAGATGCTGTCATTGTGGAATTGCTAAGGGAGAAAAAATTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGTAGCTGCCAT
GGTGGCATCCAATTTACGAAACAGAGGGCGCGTTGTGGATCTTATTCTAGAGGACAGACGCCTGAAATGGGCTTTTAAGCATGCAGAAAGAGTTAATGCAAAGAGGTTGTTTCTTGTCGGGGATGTTGAGTGGGAACGTGGTGCTGTGCGTGTAAAAGATCTTGCAACCAGAGAAGAATCTGATATGCTGATTAGTGATT
TATTATAAAATTATATCTTTCATCATTTATTTCTTCAGCATAACATCTGATCATATATACTGTCTTGCAAAATTTTCAAAGGGGGAAAGCAATCTTGCCTATTTTTGGTTCCTTGGATCCTAAGATATATATGTGCCTAGAGTTCATGAACATTAAGATTGGAGAAATAACATGTTAGAGAGGTTGGAATGGAAAAGGCA
GTTATTGGCTGGTTGTAGACAAATACATGAAAGAAGATACATAAAAACTGTGTATTATGAGATAATTGCAGATATGCAAAAATAGATCCTAAACTTGTATAAGATTATGGACAGAAAGTTGAGAAGATAAAATCACAGAAGACATAGGTGGATTTTTTTTATTGATTCCACTAGAAGAGGATCTCACAACTCCAATAGTT
TTCCAAGTTGGTGCATAGGGAGGTAAGTGATGCTCTTTATTGCAGAACTGGGTAGAGTTGGGAAAGTGAAGACATTTCTACACTTACCAGAGGCTGGTATTTCAAATAAACTCAGTAAAGCATCCTCTGGCACGAATCTCCAAAATAACCATTCAGCACGCTTGGGGGCTTTAAAAGAAGAAGGATGTCTGTAATATCTG
AAACTCTACTTGGTTTCAAGCCATCAATGTAATGTTCCTCCAAATTTGATCTCGAGTTGTCTCAATATGTATATTGCAGCCTCAAAATTAGTGCTTTCTTGGTGCATAATAGCAGTATATCTAACAATACCTAAATTGCAAAATTTACTGGGCTCCTCTCATGTAAAACACTTGGCATTCAAAATGCTTAGCTTTTGAAT
TTCTGAATGTTACAGAAGCTACACACAATTGGTTTCTTGAGATTATTTATATTTAAAAATCTGATCTTCCCATTTTAAATCTGCAATTATATTTGTAATATTTCTGGGTACC
Intron 2 GTACAATCCT ... TTTATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.37 | 59 | 12 | 16.5 |
| A2 | 16.3 | 54 | 13 | 11.3 |
| A3 | 21.45 | 48 | 10 | 14 |
| A4 | 10.72 | 48 | 7 | 6 |
| A5 | 23.08 | 18 | 6 | 6 |
| A6 | 17.19 | 74 | 7.5 | 16.5 |
| A7 | 21.82 | 117 | 12.5 | 36 |
| A8 | 13.41 | 147 | 23.5 | 24 |
| A9 | 17.73 | 131 | 15 | 30.3 |
| A10 | 15.26 | 94 | 12.5 | 18 |
>TRINITY_DN115962_c0_g1_i4 from sample A3 / Example spliced isoformAGAAAAGATGTAAACAGGTAATTGTCTTGCAAATTTGACACTGTAAAAGTAGGATCAGGAAAATAATATTGGGGAGTTATTTCACAAGTAGCAGCGATGGTAAAGGTTTTGAGGCCATTTGAGGCACATTCCCATTCATTCAGGTTTTGGATAGGCAGGTTTTCAACGGAGCAGATAGCTCTATCGCCTCATTATCAAAT
GGCACCTGTATGTGGCGCGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGATGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGTC
TCTGCACATCTCAGGCGAATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGGAGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCGG
CTTCGCAATTGGCTTTTTCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTCG
GGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAA
TTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCAT
GCTTTGTCATTAAGATCATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAACT
TCGAGCAATATGTGGAGGTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGTGGTTTTGGTTTCGGAGATGCTGTCATTGTGGAATTGCTAAGGGAGAAAAAATTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGTAGCTGCCA
TGGTGGCATCCAATTTACGAAACAGAGGGCGCGTTGTGGATCTTATTCTAGAGGACAGACGCCTGAAATGGGCTTTTAAGCATGCAGAAAGAGTTAATGCAAAGAGGTTGTTTCTTGTCGGGGATGCTGAGTGGGAACGTGGTGCCGTGCGTGTAAAAGATCTTGCAACCAGAGAAGAATCTGATATGCTGATTAGTGAT
TTATTATAAAATTATATCTTTCATCATTTATTTCTTCAGCATAACATCTGATCATATATACTGTCTTGCAAAATTTTCAAAGGGGGAAAGCAATCTTGCCTATTTTTGGTTCCTTGGATCCTAAGATATATATGTGCCTAGAGTTCATGAACATTAAGATTGGAGAAATAACATGTTAGAGAGGTTGGAATGGAAAAGGC
AGTTATTGGCTGGTTGTAGACAAATACATGAAAGAAGATACATAAAAACTGTGTATTATGAGATAATTGCAGATATGCAAAAATAGATCTTAAACTTGTATAAGATTATGGACAGAAAGTTGAGAAGATAAAATCACAGAAGACATAGGTGGATTTTTTTTATTGATTCCACTAGAAGAGGATCTCACAACTCCAATAGT
TTTCCAAGTTGGTGCATAGGGAGGTAAGTGATGCTCTTTATTGCAGAACTGGGTAGAGTTGGGAAAGTGAAGACATTTCTACACTTACCAGAGGCTGGTATTTCAAATAAACTCAGTAAAGCATCCTCTGGCACGAATCTCCAAAATAACCATTCAGCACGCTTGGGGGCTTTAAAAGAAGAAGGATGTCTGTAATATCT
GAAACTCTACTTGGTTTCAAGCCATCAATGTAATGTTCCTCCAAATTTGATCTCGAGTTGTCTCAATATGTATATTGCAGCCTCAAAATTAGTGCTTTCTTGGTGCATAATAGCAGTATATCTAACAATACCTAAATTGCAAAATTTACTGGGCTCCTCTCATGTAAAACACTTGGCATTCAAAATGCTTAGCTTTTGAA
TTTCTGAATGTTACAGAAGCTACACACAATTGGTTTCTTGAGATTATTTATATTTAAAAATCTGATCTTCCCATTTTAAATCTGCAATTATATTTGTAATATTTCTGGGTACTTGCAGATTATGTTATGCTT
>TRINITY_DN115962_c0_g1_i7 from sample A3 / Example unspliced isoform:AGAAAAGATGTAAACAGGTAATTGTCTTGCAAATTTGACACTGTAAAAGTAGGATCAGGAAAATAATATTGGGGAGTTATTTCACAAGTAGCAGCGATGGTAAAGGTTTTGAGGCCATTTGAGGCACATTCCCATTCATTCAGGTTTTGGATAGGCAGGTTTTCAACGGAGCAGATAGCTCTATCGCCTCATTATCAAAT
GGCACCTGTATGTGGCGCGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGATGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGTC
TCTGCACATCTCAGGCGAATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGGAGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCGG
CTTCGCAATTGGCTTTTTCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTCG
GGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAA
TTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCAT
GCTTTGTCATTAAGATCATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAACT
TCGAGCAATATGTGGAGGTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGTGGTTTTGGTTTCGGAGATGCTGTCATTGTGGAAgtacaatcctttaagtctctttgttaatttggagttctaacctgctctcaggaattactgatgtattattttaccaaattctatttgatgcact
ttattttccattatatttgtgatttttttcagtgctctgctgctataatacaatatatatttgaatatatacatcctctatctatatattccaggttaacctttaaaagtttgagttgcatgttttttatcctcatgttgactgtatctttttttatgacagTTGCTAAGGGAGAAAAA
Intron 3 GTAATTGTCT ... ATTCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.41 | 7 | 5 | 27 |
| A2 | 71.93 | 16 | 21.5 | 41 |
| A3 | 79.04 | 12 | 4 | 45 |
| A4 | 76.39 | 13 | 7 | 42 |
| A5 | 60.87 | 9 | 3 | 14 |
| A6 | 77.78 | 4 | 0 | 14 |
| A7 | 72.46 | 19 | 10.5 | 50 |
| A8 | 85.19 | 4 | 2 | 23 |
| A9 | 74.29 | 18 | 10 | 52 |
| A10 | 64.06 | 23 | 7 | 41 |
>TRINITY_DN41158_c0_g1_i6 from sample A9 / Example spliced isoformCGCGATTTTTTTCTACTAGTGGAAAAGCTATGTTAACGACGAGCTTTGATGCCATAGCTAAACGTATTGATCCCTCGTGAACTTAAAAGAGAGATACGATGTGAGCCCAATTTCAATCCATTGGTCAAGAAAAGATGTAAACAGGTTTTGGATAGGCAGGTTTTCAACGGAGCAGATAGCACTATCGCCTCATTATCAAA
TGGCACCTGTATGTGGCGCGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGATGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGT
CTCTGCACATCTCAGGCGAATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGGAGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCG
GCTTCGCAATTGGCTTTTTCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTC
GGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGA
ATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCA
TGCTTTGTCATTAAGATCATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAAC
TTCGAGCAATATGTGGAGGTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGTGGTTTTGGTTTCGGAGATGCTGTCATTGTGGAATTGCTAAGGGAGAAAAAATTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGTAGCTGCC
ATGGTGGCATCCAATTTACGAAACAGAGGGCGCGTTGTGGATCTTATTCTAGAGGACAGACGCCTGAAATGGGCTTTTAAGCATGCAGAAAGAGTTAATGCAAAGAGGTTGTTTCTTGTCGGGGATGTTGAGTGGGAACGTGGTGCTGTGCGTGTAAAAGATCTTGCAACCAGAGAAGAATCTGATATGCTGATTAGTGA
TTTATTATAAAATTATATCTTTCATCATTTATTTCTTCAGCATAACATCTGATCATATATACTGTCTTGCAAAATTTTCAAAGGGGGAAAGCAATCTTGCCTATTTTTGGTTCCTTGGATCCTAAGATATATATGTGCCTAGAGTTCATGAACATTAAGATTGGAGAAATAACATGTTAGAGAGGTTGGAATGGAAAAGG
CAGTTATTGGCTGGTTGTAGACAAATACATGAAAGAAGATACATAAAAACTGTGTATTATGAGATAATTGCAGATATGCAAAAATAGATCCTAAACTTGTATAAGATTATGGACAGAAAGTTGAGAAGATAAAATCACAGAAGACATAGGTGGATTTTTTTTATTGATTCCACTAGAAGAGGATCTCACAACTCCAATAG
TTTTCCAAGTTGGTGCATAGGGAGGTAAGTGATGCTCTTTATTGCAGAACTGGGTAGAGTTGGGAAAGTGAAGACATTTCTACACTTACCAGAGGCTGGTATTTCAAATAAACTCAGTAAAGCATCCTCTGGCACGAATCTCCAAAATAACCATTCAGCACGCTTGGGGGCTTTAAAAGAAGAAGGATGTCTGTAATATC
TGAAACTCTACTTGGTTTCAAGCCATCAATGTAATGTTCCTCCAAATTTGATCTCGAGTTGTCTCAATATGTATATTGCAGCCTCAAAATTAGTGCTTTCTTGGTGCATAATAGCAGTATATCTAACAATACCTAAATTGCAAAATTTACTGGGCTCCTCTCATGTAAAACACTTGGCATTCAAAATGCTTAGCTTTTGA
ATTTCTGAATGTTACAGAAGCTACACACAATTGGTTTCTTGAGATTATTTATATTTAAAAATCTGATCTTCCCATTTTAAATCTGCAATTATTTTGTAATCTTTCTGGGTACTTGCAGATTATGTTATGCTTTCCTACATTGTTG
>TRINITY_DN41158_c0_g1_i1 from sample A9 / Example unspliced isoform:CGCGATTTTTTTCTACTAGTGGAAAAGCTATGTTAACGACGAGCTTTGATGCCATAGCTAAACGTATTGATCCCTCGTGAACTTAAAAGAGAGATACGATGTGAGCCCAATTTCAATCCATTGGTCAAGAAAAGATGTAAACAGgtaattgtcttgcaaatttgacactgtaaaagtaggatcaggaaaataatattggg
gagttatttcacaagtagcagcgatggtaaaggttttgaggccatttgaggcacattcccattcattcagGTTTTGGATAGGCAGGTTTTCAACGGAGCAGATAGCACTATCGCCTCATTATCAAATGGCACCTGTATGTGGCGCGGCAAAAGGGGGCGCCATAATGTTGGGAAGCAATGCTCTTGTGTGTGCCAACAGA
TGGCTGCTGCTAAACCCTTCTTTAACTCTCAGACCTCCTCAAACACGGCACCAATATTCCTCCAACACGAACATCAATTTTATTATCAAAAGTCGCCCCCCTGCTTTACGTAGTGGTCGTCGTTGTCTCTGCACATCTCAGGCGAATGAAGCTTCTTCTGGTGGTGCTACAATCTCAACAAATACTTACATGGAGGAAGG
AGAGGTCTCCATTACAGGAAAGAATTCTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATTGATGTTAATCCTCCACGTGGAACTAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAATTGGCTTTTTCAAAAGTTTCGAGAGGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAG
TTCTGGAATCTGAAGCACTTTTTGTGAGAAAATCAGGAGAAGAGATAACAGAACAGCTCTACAGTTTTGAAGACAAGGGTGGTCGGCGGGTTGCACTTAGGCCAGAGCTGACACCATCTTTAGCTCGGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCACTCAAATGGTTTGCGATAGGACAATGTTGGCGTTAT
GAAAGAATGACCAGAGGGCGACGCCGAGAACATTACCAATGGAATATGGATATAATGGGAATTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATAGAGCATCATTCCAT
ACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGATAAGATTGAGAAAATGCCTGCAGAAGACATAAAAAAAGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATCATTATCTGAACTAGAAGAATTGCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGA
AACAACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCCTATTACACAGGAACTGTCTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAGGTGGACGGTATGACAGGCTTCTGTCTACTTTTGGTGGCACTGACATCCCTGCATGT
GGTTTTGGTTTCGGAGATGCTGTCATTGTGGAATTGCTAAGGGAGAAAAAATTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGTAGCTGCCATGGTGGCATCCAATTTACGAAACAGAGGGCGCGTTGTGGATCTTATTCTAGAGGACAGACGCCTGAAATGGGC
TTTTAAGCATGCAGAAAGAGTTAATGCAAAGAGGTTGTTTCTTGTCGGGGATGTTGAGTGGGAACGTGGTGCTGTGCGTGTAAAAGATCTTGCAACCAGAGAAGAATCTGATATGCTGATTAGTGATTTATTATAAAATTATATCTTTCATCATTTATTTCTTCAGCATAACATCTGATCATATATACTGTCTTGCAAAA
TTTTCAAAGGGGGAAAGCAATCTTGCCTATTTTTGGTTCCTTGGATCCTAAGATATATATGTGCCTAGAGTTCATGAACATTAAGATTGGAGAAATAACATGTTAGAGAGGTTGGAATGGAAAAGGCAGTTATTGGCTGGTTGTAGACAAATACATGAAAGAAGATACATAAAAACTGTGTATTATGAGATAATTGCAGA
TATGCAAAAATAGATCCTAAACTTGTATAAGATTATGGACAGAAAGTTGAGAAGATAAAATCACAGAAGACATAGGTGGATTTTTTTTATTGATTCCACTAGAAGAGGATCTCACAACTCCAATAGTTTTCCAAGTTGGTGCATAGGGAGGTAAGTGATGCTCTTTATTGCAGAACTGGGTAGAGTTGGGAAAGTGAAGA
CATTTCTACACTTACCAGAGGCTGGTATTTCAAATAAACTCAGTAAAGCATCCTCTGGCACGAATCTCCAAAATAACCATTCAGCACGCTTGGGGGCTTTAAAAGAAGAAGGATGTCTGTAATATCTGAAACTCTACTTGGTTTCAAGCCATCAATGTAATGTTCCTCCAAATTTGATCTCGAGTTGTCTCAATATGTAT
ATTGCAGCCTCAAAATTAGTGCTTTCTTGGTGCATAATAGCAGTATATCTAACAATACCTAAATTGCAAAATTTACTGGGCTCCTCTCATGTAAAACACTTGGCATTCAAAATGCTTAGCTTTTGAATTTCTGAATGTTACAGAAGCTACACACAATTGGTTTCTTGAGATTATTTATATTTAAAAATCTGATCTTCCCA
TTTTAAATCTGCAATTATTTTGTAATCTTTCTGGGTACTTGCAGATTATGTTATGCTTTCCTACATTGTTG