sp|A2YMP7|SCAM1_ORYSI ----> Putative secretory carrier-associated membrane protein 1
Intron 1 GTAACGAGCT ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.66 | 15.5 | 16 | 26 |
| A2 | 71.05 | 11 | 2 | 27 |
| A3 | 56.8 | 16 | 4 | 21 |
| A4 | 65.63 | 11 | 5 | 21 |
| A5 | 75 | 3 | 4 | 9 |
| A6 | 64.23 | 78.5 | 25 | 141 |
| A7 | 63.51 | 77 | 17 | 134 |
| A8 | 63.41 | 116 | 17 | 201 |
| A9 | 65.55 | 92 | 15 | 175 |
| A10 | 65.24 | 65 | 5 | 122 |
>TRINITY_DN34642_c0_g1_i5 from sample A6 / Example spliced isoformACTAAGTATTTGGGTTCTTCAGCTATTACAGTTGTTTTGGTACACCATCTTGTATTTGTTTCATCTCCATGATGGGCATATGTACCTCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGC
GTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAG
CAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCA
ATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGATGCTTGACTCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATC
AACTGATGGTATATTATGGTTTTCTTTGGCAA
>TRINITY_DN34642_c0_g1_i4 from sample A6 / Example unspliced isoform:CTGTCGGGTCTTAGTTGTAACGTCTTCAAGAAGATATTTAAAGACATTTAATTAACTAATTAAATGAAAATTAAGAGTCATCTGGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCT
GTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCTGCTGTGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCA
GACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATTGGAATCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTAT
TCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGGTTTTGTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTC
TGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTTCACATTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTT
TACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGGTGAGTTTAATATTGCTCTTTATTCCTAAGATATTTAGTTTTACATCTATGGAGAGCCGTATAACAAGTTGTAATACAGTACATGTATGTGTCAATGTTTTCTTTACAATCTAACCATTTGGTTTGCAACCCTTTTTGTC
AGCTATTACAGTTGTTTTGGTACACCATCTTGTATTTGTTTCATCTCCATGATGGGCATATGTACCTgtaacgagctctgtgttgtttttgttcactattataaaatgttataattttatttcaatgtttattttacagatcagatcaagtttgatgcttagggtaatgcctttgtagtctattgctttaattcatcgaa
gaccttgaaatgtttatgaaatgctgtggccagttttatttgtttatcctttttatttgttttgttctgcagCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGA
GTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGG
TCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTT
GGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGATGCTTGACTCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATCAACTGATGGTATATT
ATGGTTTTCTTTGGCAA
Intron 2 GTGAGTTTAA ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.66 | 68 | 21 | 26 |
| A2 | 28.16 | 68.9 | 8.8 | 27 |
| A3 | 27.27 | 56 | 5.8 | 21 |
| A4 | 23.95 | 66.7 | 13 | 21 |
| A5 | 24.32 | 28 | 14.6 | 9 |
| A6 | 25.62 | 409.3 | 56.6 | 141 |
| A7 | 24.8 | 406.4 | 76.2 | 134 |
| A8 | 27.52 | 529.5 | 71.8 | 201 |
| A9 | 27.18 | 468.8 | 52.6 | 175 |
| A10 | 27.07 | 328.7 | 46.6 | 122 |
>TRINITY_DN114767_c0_g2_i1 from sample A1 / Example spliced isoformGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCTGTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCTGCTG
TGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCAGACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATTGGAA
TCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTATTCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGGTTTT
GTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTCTGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTTCACA
TTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGCAAGTATATGCATATTTCAGACGA
TCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTG
CCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGT
GATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTT
GAGGAAATTGCCAGAAAATATACACGAT
>TRINITY_DN114767_c0_g2_i7 from sample A1 / Example unspliced isoform:GGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGgtgagtttaatattgctctttattcctaagatatttagttttacatctatggagagccgtataacaagttgtaatacagtacatg
tatgtgtcaatgttttctttacaatctaaccatttggtttgcaaccctttttgtcagctattacagttgttttggtacaccatcttgtatttgtttcatctccatgatgggcatatgtacctgtaacgagctctgtgttgtttttgttcactattataaaatgttataattttatttcaatgtttattttacagatcaga
tcaagtttgatgcttagggtaatgcctttgtagtctattgctttaattcatcgaagaccttgaaatgtttatgaaatgctgtggccagttttatttgtttatcctttttatttgttttgttctgcagCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCA
GTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTC
TTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGT
AGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGAT
Intron 3 GCTATTACAG ... TGATGCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.79 | 67 | 9 | 20 |
| A2 | 16.47 | 71 | 10 | 18 |
| A3 | 17.29 | 55 | 8 | 15 |
| A4 | 14.47 | 65 | 12 | 10 |
| A5 | 17.65 | 28 | 5 | 7 |
| A6 | 16.94 | 407 | 56 | 110 |
| A7 | 17.52 | 405 | 63 | 109 |
| A8 | 17.09 | 524 | 65 | 151 |
| A9 | 17.12 | 460 | 57 | 133 |
| A10 | 17.48 | 328 | 44 | 95 |
>TRINITY_DN33778_c0_g1_i3 from sample A8 / Example spliced isoformTCTGGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCTGTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCT
GCTGTGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCAGACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATT
GGAATCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTATTCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGG
TTTTGTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTCTGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTT
CACATTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGCAAGTATATGCATATTTCAG
ACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTC
ATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAG
GTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGT
ATTTGAGGAAATTGCCAGAAAATATACACGATGCTTGACTCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATCAACTGATGGTATATTATGGTTTTCTTTGGCAAATGCTCCTGATTTTGTATGGTATGAAAATGGCAACAATTCTGTTGGCTTATGAACATTTTCCTGCAACTACCACT
CTAACAGAGAGTTACGCGCACCGTGTATAAGGAACTTATGTAGCATGTTATCTTAACCCCCTCGCTAATTAGTTACCTTAATGCTTGAGAATGTTTCGATGTTATCCAGGTGAACAGTTCAAACAATGGTGCCAAGAAGGGTTATAGAAAAAA
>TRINITY_DN33778_c0_g1_i1 from sample A8 / Example unspliced isoform:TCTGGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCTGTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCT
GCTGTGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCAGACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATT
GGAATCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTATTCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGG
TTTTGTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTCTGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTT
CACATTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAgctattacagttgttttggta
caccatcttgtatttgtttcatctccatgatgggcatatgtacctgtaacgagctctgtgttgtttttgttcactattataaaatgttataattttatttcaatgtttattttacagatcagatcaagtttgatgcttagGCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCT
TTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGG
GAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGA
CTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGATGCTTGAC
TCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATCAACTGATGGTATATTATGGTTTTCTTTGGCAAATGCTCCTGATTTTGTATGGTATGAAAATGGCAACAATTCTGTTGGCTTATGAACATTTTCCTGCAACTACCACTCTAACAGAGAGTTACGCGCACCGTGTATAAGGAACTTAT
GTAGCATGTTATCTTAACCCCCTCGCTAATTAGTTACCTTAATGCTTGAGAATGTTTCGATGTTATCCAGGTGAACAGTTCAAACAATGGTGCCAAGAAGGGTTATAGAAAAAA
Intron 4 GTAATGCCTT ... TGTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.08 | 33.7 | 11 | 26 |
| A2 | 50.11 | 32.7 | 2 | 27 |
| A3 | 47.3 | 28.3 | 1 | 21 |
| A4 | 52.57 | 24 | 1 | 21 |
| A5 | 47.18 | 12 | 2 | 9 |
| A6 | 46.26 | 197.7 | 25 | 141 |
| A7 | 45.67 | 191 | 20 | 134 |
| A8 | 47.58 | 257.7 | 22 | 201 |
| A9 | 46.92 | 228.7 | 13 | 175 |
| A10 | 46.99 | 161.7 | 7 | 122 |
>TRINITY_DN114767_c0_g2_i6 from sample A1 / Example spliced isoformGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCTGTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCTGCTG
TGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCAGACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATTGGAA
TCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTATTCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGGTTTT
GTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTCTGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTTCACA
TTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGATCAGATCAAGTTTGATGCTTAGG
CAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTAT
ATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTG
TAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGG
CTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGAT
>TRINITY_DN114767_c0_g2_i7 from sample A1 / Example unspliced isoform:GGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGGTGAGTTTAATATTGCTCTTTATTCCTAAGATATTTAGTTTTACATCTATGGAGAGCCGTATAACAAGTTGTAATACAGTACATG
TATGTGTCAATGTTTTCTTTACAATCTAACCATTTGGTTTGCAACCCTTTTTGTCAGCTATTACAGTTGTTTTGGTACACCATCTTGTATTTGTTTCATCTCCATGATGGGCATATGTACCTGTAACGAGCTCTGTGTTGTTTTTGTTCACTATTATAAAATGTTATAATTTTATTTCAATGTTTATTTTACAGATCAGA
TCAAGTTTGATGCTTAGGgtaatgcctttgtagtctattgctttaattcatcgaagaccttgaaatgtttatgaaatgctgtggccagttttatttgtttatcctttttatttgttttgttctgcagCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCA
GTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTC
TTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGT
AGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGAT
Intron 5 GTGAGTTTAA ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.25 | 49 | 20.3 | 14.3 |
| A2 | 12.14 | 57 | 8 | 4.3 |
| A3 | 12.67 | 39 | 5.7 | 3 |
| A4 | 19.33 | 47 | 11.7 | 2.3 |
| A5 | 38.35 | 23 | 14.3 | 3.7 |
| A6 | 13.5 | 337 | 53 | 33 |
| A7 | 18.06 | 322 | 71.7 | 27.7 |
| A8 | 14.29 | 398 | 67 | 30.3 |
| A9 | 11.43 | 370 | 48.3 | 32.7 |
| A10 | 13.63 | 269 | 43 | 20 |
>TRINITY_DN114767_c0_g2_i6 from sample A1 / Example spliced isoformGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCTGTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCTGCTG
TGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCAGACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATTGGAA
TCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTATTCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGGTTTT
GTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTCTGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTTCACA
TTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGATCAGATCAAGTTTGATGCTTAGG
CAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTAT
ATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTG
TAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGG
CTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGAT
>TRINITY_DN114767_c0_g2_i7 from sample A1 / Example unspliced isoform:GGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTTTACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGgtgagtttaatattgctctttattcctaagatatttagttttacatctatggagagccgtataacaagttgtaatacagtacatg
tatgtgtcaatgttttctttacaatctaaccatttggtttgcaaccctttttgtcagctattacagttgttttggtacaccatcttgtatttgtttcatctccatgatgggcatatgtacctgtaacgagctctgtgttgtttttgttcactattataaaatgttataattttatttcaatgtttattttacagATCAGA
TCAAGTTTGATGCTTAGGGTAATGCCTTTGTAGTCTATTGCTTTAATTCATCGAAGACCTTGAAATGTTTATGAAATGCTGTGGCCAGTTTTATTTGTTTATCCTTTTTATTTGTTTTGTTCTGCAGCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCA
GTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTC
TTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGT
AGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGAT
Intron 6 GTGAGTTTAA ... TTTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.71 | 4 | 22 | 15 |
| A2 | 77.78 | 4 | 10 | 3 |
| A3 | 73.22 | 3.5 | 6 | 5 |
| A4 | 78.89 | 5.5 | 15 | 7 |
| A5 | 88.49 | 2.3 | 15 | 6 |
| A6 | 73.58 | 29.3 | 62 | 23 |
| A7 | 78.63 | 31 | 83 | 24 |
| A8 | 76.71 | 33.3 | 79 | 18 |
| A9 | 75.54 | 28.3 | 59 | 16 |
| A10 | 77.37 | 21.5 | 52 | 7 |
>TRINITY_DN34642_c0_g1_i5 from sample A6 / Example spliced isoformACTAAGTATTTGGGTTCTTCAGCTATTACAGTTGTTTTGGTACACCATCTTGTATTTGTTTCATCTCCATGATGGGCATATGTACCTCAAGTATATGCATATTTCAGACGATCAGGAAAATCAACGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGC
GTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGAAAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAG
CAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCGATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCA
ATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCAGAAAATATACACGATGCTTGACTCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATC
AACTGATGGTATATTATGGTTTTCTTTGGCAA
>TRINITY_DN34642_c0_g1_i3 from sample A6 / Example unspliced isoform:CTGTCGGGTCTTAGTTGTAACGTCTTCAAGAAGATATTTAAAGACATTTAATTAACTAATTAAATGAAAATTAAGAGTCATCTGGGCTAAACAAATAGAAGCGCGCAGCAGAGCGAAAAAGATTGGTGTTTTCTCGGAGAGATGTTCTGTTACCTGCCGTGGTAGTTGAAGTTGGATTGTGTGGTTCGAGCTCGAAACCT
GTGGCCTCCATTCACCAATGGCGCGTCGTGCCGATCCAAATCCCTTCGAGGAAGAAGAAGTTAACCCCTTCTCGGACCCTGCTGTGCGGGCACAGGTATCGGGACCGTCACATTATTCTGCAGGTCCATTTTACACCACGTCTACGCGTGGTGCATCAGCAACAAATTCAAAGCCGTCGCCTTTTCCAGCTGAACCGGCA
GACTTCACTTATGATCGGGATGTGACTGTAGACATTCCACTTGGGACAACAAAAGACACAAAGAAAAGGGAAAAGGAATTGGAATCATGGGAGGCAGAACTCAAAAGAAAGGAGCAGGAAATCAGGAGAAGGGAAGAAGCCATTGGACGTACTGGCTTTGTGATCAAGGACAAAAACTGGCCTCCCTTTTTCCCAATTAT
TCATAGTGACATTGCAGGAGAAGTGCCTCCTCCCGCTCAGCGATTGATGTATTTTGCCTTTGCAAGCTGGCTGGGCATGGTTTTGTGCCTTGTATGGAATGCCATCGCTGTGAGTGTTGCATGGATTAAGGGAGATGGGGTCAATATCTGGTTACTTGCTATAATCTATGTTATTGTTGGCTGCCCTGGGTCTTATATTC
TGTGGTACAAACCTCTATACCGTGCCATGAGCAATGAAAATGCTTTTAGGTTTGGCTGCTTTTTCTTAACTTACCTGTTTCACATTGGCTTCTGCATATTTGCTGCTGTTGCCCCTCCAATTTTCTTCAATGGGAGGTCATTGGCGGGTATCTTGCCAGCGGTCGATTACTTTCCTAAAATTCTTTTGGTTGGGATTTTT
TACTTGGTTGGTTTTGGCTTATTTTGTTTAGAGACGCTACTAAGTATTTGGGTTCTTCAGgtgagtttaatattgctctttattcctaagatatttagttttacatctatggagagccgtataacaagttgtaatacagtacatgtatgtgtcaatgttttctttacaatctaaccatttggtttgcaaccctttttgtc
agCTATTACAGTTGTTTTGGTACACCATCTTGTATTTGTTTCATCTCCATGATGGGCATATGTACCTGTAACGAGCTCTGTGTTGTTTTTGTTCACTATTATAAAATGTTATAATTTTATTTCAATGTTTATTTTACAGATCAGATCAAGTTTGATGCTTAGGCAAGTATATGCATATTTCAGACGATCAGGAAAATCAA
CGGAAGCTGCAAGTTCTGGTCTTTAAAAACAACTCAGTATTATTTCTATACCTGTTCTAGAATTTGTCCACGTTGCGTTAAGTACTAATGAGTTGGCTAGAGATTGGAGATGCACATCTAGTCGTTGACTTGGAATATATTTTTCAGCTCCAAATGAAATTATATGATAGAAAGGCAGGTGTCATTGCCATATAAATCGA
AAAAAATCTTTAATGATGTTGGGAGACTTCAACTTCTTGGTGTTAGGATGTCGTCCATTATATCTATTATCGATAGCAATTTTTTGTCTGGTCAGAACTTCGTGCTTTACATATAAATATTTAAGCTTGGGCCATTTCTGAGGTTTCCATATTTTTGTCGCTGTAATCTTGCTTCCATTTGAGGTGTGATCATTGATTCG
ATTAAAGAGAGGAGGTTCCCGACTGTACTGTAGCGTAGAAATGTAGAAACATGACTGCATGCTGAGGCTACAAGCAATATTTCACTCATTTGGATCCTGCCTGTTTGTGACAGGCTGACGTGAAATTAATAAGAAGCTTTGTGTTTGCCTGCAATGTTTGTGGCTTAAGTTTTGGCTGTATGTATTTGAGGAAATTGCCA
GAAAATATACACGATGCTTGACTCAATGTTTTATATACATAAACAAATCATAATAAATTTTCCAATAGTCATCATCAACTGATGGTATATTATGGTTTTCTTTGGCAA