sp|Q9C5X2|CCJ18_ARATH ----> Cyclin-J18
Intron 1 GTAATAAAAC ... AAAGAAACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 3 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 100 | 0 | 4 | 0 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 60 | 1 | 1 | 2 |
| A8 | 66.67 | 2 | 4 | 4 |
| A9 | 33.33 | 1 | 1 | 0 |
| A10 | 100 | 0 | 0 | 1 |
>TRINITY_DN40308_c1_g1_i1 from sample A8 / Example spliced isoformGGAAAATTGGAGTGCTGTCCACGCGGGAAAGAGGCAAATGCAGGAGAAGGCGGTTTTGTTACCGAGTATGCGCAGGCAAGCCCTGGGTTTTCTGATATACGTTACTCATGAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTC
GACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCCGATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTG
GTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGC
TATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTGTGAGAGAATATTGGTGCATGTTCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATT
ACATTCAATGGTCGCAATATATATTACTTTTGGTTTTTCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
>TRINITY_DN40308_c1_g1_i6 from sample A8 / Example unspliced isoform:GAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTCGACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCC
GATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGTGAGGCTAACAGTTTACTAATTACAAGTTTCTTCGTTTCTGCAGTTTGAAATCATATTAATTTCCTTTAAAATTTCTGTGAAAGTTTAAGGCATGAAAGATTTTGCAGGAGCTGGTG
GTCATGAAGgtaataaaaccgtccaggccgaaagaaaatgttgaaggaaatttcattttaatttcgaactgattaagtgaaaagttgcaaaaatgcttatttaaagaaacagGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGTAAATCTTTGTAAAAT
TAAAAGTTTTGAATACAGACAAATCTTTGTAAAATTAAACACATTAAATACAGGTATGTCTTTAGAAAATTAGAGCTCCGC
Intron 2 GTGAGGCTAA ... GATTTTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 100 | 0 | 0 | 4 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 33.33 | 1 | 0 | 1 |
| A8 | 60 | 2 | 3 | 3 |
| A9 | 50 | 1 | 1 | 1 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN40308_c1_g1_i1 from sample A8 / Example spliced isoformGGAAAATTGGAGTGCTGTCCACGCGGGAAAGAGGCAAATGCAGGAGAAGGCGGTTTTGTTACCGAGTATGCGCAGGCAAGCCCTGGGTTTTCTGATATACGTTACTCATGAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTC
GACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCCGATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTG
GTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGC
TATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTGTGAGAGAATATTGGTGCATGTTCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATT
ACATTCAATGGTCGCAATATATATTACTTTTGGTTTTTCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
>TRINITY_DN40308_c1_g1_i6 from sample A8 / Example unspliced isoform:GAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTCGACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCC
GATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTgtgaggctaacagtttactaattacaagtttcttcgtttctgcagtttgaaatcatattaatttcctttaaaatttctgtgaaagtttaaggcatgaaagattttgcagGAGCTGGTG
GTCATGAAGGTAATAAAACCGTCCAGGCCGAAAGAAAATGTTGAAGGAAATTTCATTTTAATTTCGAACTGATTAAGTGAAAAGTTGCAAAAATGCTTATTTAAAGAAACAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGTAAATCTTTGTAAAAT
TAAAAGTTTTGAATACAGACAAATCTTTGTAAAATTAAACACATTAAATACAGGTATGTCTTTAGAAAATTAGAGCTCCGC
Intron 3 GTAAGCTTTC ... CTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 42.86 | 8 | 6 | 0 |
| A7 | 50 | 2 | 2 | 1 |
| A8 | 50 | 2 | 2 | 2 |
| A9 | 16.67 | 10 | 2 | 0 |
| A10 | 50 | 1 | 1 | 0 |
>TRINITY_DN40308_c1_g1_i1 from sample A8 / Example spliced isoformGGAAAATTGGAGTGCTGTCCACGCGGGAAAGAGGCAAATGCAGGAGAAGGCGGTTTTGTTACCGAGTATGCGCAGGCAAGCCCTGGGTTTTCTGATATACGTTACTCATGAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTC
GACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCCGATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTG
GTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGC
TATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTGTGAGAGAATATTGGTGCATGTTCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATT
ACATTCAATGGTCGCAATATATATTACTTTTGGTTTTTCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
>TRINITY_DN40308_c1_g1_i4 from sample A8 / Example unspliced isoform:GTAGGAAAATCTCTGTGAAATTAAAAGGTTTTAAATACAGAATTGAGAGCATTGAGTACTGGTAAATCTTTATGAAATTAAAGGTTTTAAATGTAGGAAAATCTCTCTGAAATTAAAAGGTTTTAAATACAGAATTGAGAGCATTGTTACATGGCAAGATTTATTCGATTATTTTTCCCAAAGGTCTAATAAGGCATCGC
AGTCACACGGCAGGGTTTATTAAATAAATCTGTTTTTTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGCTATTATTgtaagctttctggccatgattcaacataatta
tttcagaggttacggttcttaatttgtcggtgttttctatttgcagGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCGTAAGAATCGCATATCCCTCCTTTATTCTTTCAATCAACTATTCATTGCAATTGCTACAATATAGGGACTATCTCTCATAAGAATTTCTATAT
GGTGATAGTTGTGTTGCGTGTATATTTATAGTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTCTGAGAGAATTTTGGTGCATGTCCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATTACATTCAATGGTCGCAATATATATTACTTTTGGTTTT
TCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
Intron 4 GTAAGAATCG ... ATATTTATAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 16.67 | 5 | 0 | 1 |
| A7 | 80 | 1 | 1 | 4 |
| A8 | 33.33 | 4 | 2 | 2 |
| A9 | 20 | 8 | 0 | 2 |
| A10 | 50 | 2 | 0 | 2 |
>TRINITY_DN40308_c1_g1_i1 from sample A8 / Example spliced isoformGGAAAATTGGAGTGCTGTCCACGCGGGAAAGAGGCAAATGCAGGAGAAGGCGGTTTTGTTACCGAGTATGCGCAGGCAAGCCCTGGGTTTTCTGATATACGTTACTCATGAGCTCAAAATTCGTCCACTCACCAAGTATACTGCTCTGGCTTTCTTTGGAGATCGTTTTCTGCAAGCTTTGCCAAGCCGTGGACGCGCTC
GACTAAGTGATCGGGAAATTCGGTGGATCGATCCCCCAAGGAAGGCAAATCTACAGCTATTTGCTCTGGTTTCGCTATGGATTGCCAGTAAAATTCATGAAACGCGGCCGATCTTCGTAGGCAGTCTCAAGTCCATAGCCGATGGACTGATCTCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTG
GTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGC
TATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTGTGAGAGAATATTGGTGCATGTTCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATT
ACATTCAATGGTCGCAATATATATTACTTTTGGTTTTTCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
>TRINITY_DN40308_c1_g1_i4 from sample A8 / Example unspliced isoform:GTAGGAAAATCTCTGTGAAATTAAAAGGTTTTAAATACAGAATTGAGAGCATTGAGTACTGGTAAATCTTTATGAAATTAAAGGTTTTAAATGTAGGAAAATCTCTCTGAAATTAAAAGGTTTTAAATACAGAATTGAGAGCATTGTTACATGGCAAGATTTATTCGATTATTTTTCCCAAAGGTCTAATAAGGCATCGC
AGTCACACGGCAGGGTTTATTAAATAAATCTGTTTTTTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCAGAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGCTATTATTGTAAGCTTTCTGGCCATGATTCAACATAATTA
TTTCAGAGGTTACGGTTCTTAATTTGTCGGTGTTTTCTATTTGCAGGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCgtaagaatcgcatatccctcctttattctttcaatcaactattcattgcaattgctacaatatagggactatctctcataagaatttctatat
ggtgatagttgtgttgcgtgtatatttatagTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTCTGAGAGAATTTTGGTGCATGTCCTGCAACCCACGGAATAAATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATTACATTCAATGGTCGCAATATATATTACTTTTGGTTTT
TCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAGAGTAATCGGTAATGAGTAATTGAGATGAGAAGTTGTAAATGGAAGATCACAAGTTCAAATCCAG
Intron 5 GTAAGAATCG ... ATATTTATAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 0 | 5 | 0 | 0 |
| A7 | 71.43 | 1 | 1 | 4 |
| A8 | 27.27 | 4 | 1 | 2 |
| A9 | 5.88 | 8 | 1 | 0 |
| A10 | 0 | 2 | 0 | 0 |
>TRINITY_DN39219_c0_g1_i2 from sample A7 / Example spliced isoformCAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTGGTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCA
GAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGCTATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTGTGAGAGAATATTGGTGCATGTTCTGCAACCCACGGAATA
AATGTGAGTGACATCTTCATTTTTACAAAGGCAAATAAATGGCTATTACATTCAATGGTCGCAATATATATTACTTTTGGTTTTTCGAGAAAAAAAATGCCCGGAGTTTGAAAAAACAATTTGGGGTATATATGGACATTTTTTTTTGTACATAGTAATAGGTAAGATTGACTCATGGGGTAG
>TRINITY_DN39219_c0_g1_i1 from sample A7 / Example unspliced isoform:CAGATCAACATTTCACCACCAGAGACTTTTGTGAAACTGAGCTGGTGGTCATGAAGGTGATCAGCTTTGACCTAAGGACAGGAAACATACTCTTCGTTCTACTTGAGGATCTGCTTTTAAAATTCAGGAACACGGTAAAGGCCGGAAAAGCTCTGAAATCCAGTGCTTGTTTAGATATCCTGGACCTCATGTACGAGTCA
GAGGACCTGAACGTTTCATTTCTGCCTTCTAACGTTTTGGCTGCTGCTATTATTGCTGTTGCGTATGTGTTGACAGTTCCTAAAGGTCGATTCGAGTTTCCTGTGCTCCCCTGGCgtaagaatcgcatatccctcctttattctttcaatcaaactattcattgcaattgctacaatatagggactatctctcataagaa
tttctatatggtgatagttgtgttgcgtgtatatttatagTGAAAATTGTGTGCAATTGTCAAGAAACGGATGTGACGGCTTTGTCTGTAAGAATCGCATATCCCT