sp|Q8RWK8|COIL_ARATH ----> Coilin
Intron 1 GTATATACTG ... GTCGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.13 | 271.8 | 34.3 | 94 |
| A2 | 27.16 | 254.5 | 28.3 | 92 |
| A3 | 29.82 | 290.3 | 29.5 | 121 |
| A4 | 32.35 | 107.8 | 24.8 | 51 |
| A5 | 38.96 | 40 | 7.8 | 25 |
| A6 | 22.8 | 66.3 | 5.8 | 19 |
| A7 | 30.05 | 465.3 | 36 | 196 |
| A8 | 25.37 | 417.5 | 40.5 | 138 |
| A9 | 25.76 | 484 | 41.3 | 164 |
| A10 | 22.72 | 415.8 | 43.5 | 118 |
>TRINITY_DN129295_c7_g1_i13 from sample A1 / Example spliced isoformAAAAGGCAAAAAGTTGGAAGGTACACAAAGAATCAGAGGAGTTCCTGGAAAGTGATCATATGACAGAGAGATGTCCTGCAAGAGAACATGATCAAGTTCAAGCACTGATCCCTGAGTTGGAGAATGCTTCTGCAGCATCTCAAGTAGAAAAAAAGTCTCCAAGCAGAAGTGCAAGGAGGAAAAAAGCAAAGAGACGTTGG
CTACGAGAACAGAAAGATAAAAATCAAGAGAAAAACAGCACCCTTGACAACCAAATTTTCTCAAAATGCAAGAAACTTCAAAAATCAAATCAATCTGATGATGCTGAAGCTGAAGAAGAAAGCCTTCCTGTAATAGTGAGACCTGGACATATACGCTTTGAGCCCATTAACAACGGTGAGATTTTTCTGTTGCCAGGTTT
CCCTATTTGTAC
>TRINITY_DN129295_c7_g1_i11 from sample A1 / Example unspliced isoform:ACCAGTTTCTTGTTTTATGAATGCTAATAGTTTACTTATATGTTTTATATCTTTATACATCAGCTCTTCTTGATTGCTTTATGATTTAGTGTTTGCATTTGTTTGATGATTAAACTATTCTCTTCTTATGAATGAAGCCTTCAAACCAAAATCACACAAAAACCAATTCATTTTCCTTCAGTTTTTATTGAGATTGTCCT
AGCTTGTACCTTCGTAGTCTAGGTACAATTTCTAGCACAAACAATGCCCAAATGGTGTGGGGGAGAGGGAACTTCCTTGCTTCACTTTGATTTCAGTTCTGAACCTCTTTGACAAGCTATCTATGGTTCTGATTTTGGTGTCGACCCCACCAAGCCCTAAAACAACATTTCACGGAAATCTATTAAACAGAATGCAAAAC
AAACTTTCATGAGAACTAAAAGGCAAAGCCAGCAGCAAAAGGATGATAGATTTTACTTAGAATCATCTCCCCTTTCCTGATAACTTGGTATATCCTCCTGTTCCTGCAATTTCCTAAGAAGTCCACCCCAATGTTTTTTTACTAGACCCTAGCCGTTCTAACTTCCTGCTTCTGGATACTTGTTTGCTGATGTTTGTCTT
TCGTGTCCAGTATTTGGGGACACAGAGCCCTCAACAGATTACCAAAATAAAAACTGATCCCACATTGCTGTGCTGGGGTTGTAAACAATGACCACTGCATGATGGCATTGATAGATGTGAGTAATGTTTAGATTGAATGACAAGTTATCTGGATTTTCACATGATATACTGGGATCTCAATACAGTGGATACATATGTTT
GACAGAGTTGACATATCAGATTTGAAATGCATGATAACTTTTGCAGAATAGAGTTGCAATTCTTTGTTTCAAATATTTGGTGAGTTTATCAACTGTGCTTAAACTGGTTATTAACTTATTTACTAAAATAGTATTAATGATGAAGTTGTCTATTCCTGAAAATTGGGTCTTGGTTATCTTCTGTAAGCTGATGGGAGGTC
ATAACCAATAACTGTCTAGTTGCATAGAATAAAATAGAATTTAAATAATCTCTAGTCCAGTGGTGGGATATGCCATTTCAGTACTTGATTTTGTTAAAGGGCATATGTGTATCATCTTTTATTGTTTGTAAGATTTTTTTCTGTTAAGAGTCAATATAAATTTTAAACCATTAATTTTTATTTCAGGGAACCACAGAGGA
TGAGTGTATGCTTTAATTAAGATATTTGACAAGTTTTCCTGGTCAAAGGGTTGTATGGATGGGAATTTTTGTTCAGAAGGCAATACATTTTCCTAGGAATTAGCGTGTTACACCTAAATTATACATTCATATCATTTTTGTGAATTTCTTCACAGGCTTATACTTTAGTCCTAGGAACTTCTTTCATTTGTTTGATCTCT
GTCAGTCATGGAATTTACTTACATTATTCATGATCCATATCAGTCTCCAAGCAGAAGTGCAAGGAGGAAAAAAGCAAAGAGACGTTGGCTACGAGAACAGAAAGATAAAAATCAAGAGgtatatactgcacttctgttgagagattaggtacataccttttaaggttaaaatttcatttgtgactcatttgtcactacgc
atctaatctgaatgattgatttttacatgttgctggcaagtcattatcagtaatctatattacttcataatacctattcagctatcatctactttctctttagttggcttctcacggtttttaatgttctgggccattgtagatgttgggtttgccttttggatttcagtttatcatatatatgtttaccatagatcgtt
ttcttttgttttgtaatgtcggttcagAAAAACAGCACCCTTGACAACCAAATTTTCTCAAAATGCAAGAAACTTCAAAAATCAAATCAATCTGATGATGCTGAAGCTGAAGAAGAAAGCCTTCCTGTAATAGTGAGACCTGGACATATACGCTTTGAGCCCATTAACAACGAGCAGGAGAGCCGGGGCATTCAAGATTC
CACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCTTCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGC
CACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATC
TCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAA
TTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTA
AGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTG
TTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGT
ACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGG
ATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC
Intron 2 GTATGTTCTC ... GGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.63 | 170.4 | 3.5 | 67.6 |
| A2 | 24.97 | 134.6 | 4.9 | 44.5 |
| A3 | 21.16 | 134.5 | 3.4 | 35.5 |
| A4 | 29.39 | 141.2 | 6.3 | 58 |
| A5 | 18.9 | 31 | 2.4 | 7 |
| A6 | 24.12 | 225.5 | 0.9 | 70.5 |
| A7 | 23.83 | 354 | 0 | 109.1 |
| A8 | 25.49 | 388.8 | 0.9 | 131.1 |
| A9 | 25.17 | 373.3 | 0.9 | 124.1 |
| A10 | 24 | 264.3 | 0.5 | 82.7 |
>TRINITY_DN129295_c7_g1_i5 from sample A1 / Example spliced isoformAGTTGGTGTTTAAAAGTTTGTTGTTACATTGATGTTCATGGATATAGAAACCTTTTTAGTTAAAATTTGAATATTTTATGTATATTTTATTTTTGTGGAGTAAACTCCGAGTTGAAGGGCTCATTTAGTCAGTCAATTGAGTTGAAAGGCTCACCGAGTCCGAGCTGAGTACAAGTCTAATAACTTTAGGCTGAGGTGGA
GGGTTCTAGTGATTTTTGGTCTCTTCCTTAAGTGCTTGGGGTTTCCTTGTTATTGACAAATTTATTCTAGTTTTTCTGTTATTGGAGTGTCCATAAAGTTTTAAGGATGATGATTGCGATTTCTTATCTGATATAGGTGTGTTGTTTAGTATCCATAATCTAGCTAGAGTTTTCTTAAAGCCTGCTTACTTGTAGTATGC
ATTCCATTCCAGTGGCAGTTTCTCCTTTGACAGTGTTCAGAACTAATACTTGTCACGATTATTAGTAGTGTGACTAGAGTGGTGGTAGTATGAGAGTGAAAACTGCTGACATATTGTTTATAAAATTTGTAGTTTGCCGGTAACATTCCATTGTGTAGTTGCAAGTTTTAGATGAACAGGCTATTTAGTCAATGACTTTG
ATCTGTTGTCTGAATTCTTCTGATGACGATAGATGCATTCAAAATATTACTGTTTAAATGAAGACTTTGAGATATGTGATGAAGAATCAGGTATGGTAGGTTTTCATGCTTGACCAGTCCCATATTGATCGTTTCAAGCAAAAAATTGAGTTCCAGATGATGGTGGAAACTTATGTTATGTCTTTCATAAATATCACTCC
AATATCTTACCTTTCCTTTACAGCTTTGGTTTCTTTTTGTGGATGCAGAGCAGGAGAGCCGGGGCATTCAAGATTCCACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCT
TCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTT
GGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTA
GCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAA
GGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAA
ACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACA
GCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGT
AATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACAC
CCCATGAACTACCTAC
>TRINITY_DN129295_c7_g1_i12 from sample A1 / Example unspliced isoform:CCAGAACTTTCTAGTTTCAGAgtatgttctctttcatgtaccctggctactggatattaatcatgcagttatcacttagaaaaccaagtttttcttctacagttgttgcaacataactgtcgtttttcagGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTT
TTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATGTAAGAAGTCTGTGCCTCTGTTCAGTTCTATAAGTAGAAATTATTTATTAATATGGATGGTGATATCTCCTGTGATTTTTGTTGTCATCATTACAGATAGATTTTGCATCACTTGTT
GATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACT
TGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCT
TGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATG
AAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTG
CTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAAT
GCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC
Intron 3 GTAAGGGTTT ... TCTGTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.74 | 348 | 2 | 65 |
| A2 | 12.56 | 390 | 0 | 56 |
| A3 | 11.25 | 347 | 5 | 44 |
| A4 | 11.22 | 261 | 0 | 33 |
| A5 | 13.08 | 93 | 0 | 14 |
| A6 | 8.51 | 43 | 0 | 4 |
| A7 | 13.21 | 276 | 1 | 42 |
| A8 | 12.12 | 145 | 0 | 20 |
| A9 | 15.24 | 267 | 0 | 48 |
| A10 | 16.04 | 225 | 0 | 43 |
>TRINITY_DN117193_c0_g2_i6 from sample A3 / Example spliced isoformAGCTTTATGATGGACCGCAAGACCTTTTACGTTGTGTGATGTAGATCCTTAACCACAAGGAAATTCAAATTCGTGTTCCCCTAACTGTCCATATAAAGTCGAAATTCGGAGATGCTAGTGACTTAGAAAGTTTGTACAAGAATTTATATTAAGGGTTCTGTTTAATCTCACATTCGGCGTGCTGCCATGGAAGACGCAGC
CGAAGTTCGGAGGATCCGTTTGATATTCGAAGATCAAAATATGCTAAGCAGGAGGCAGAGATCAGAGGGATTGAAGCAATCCTGGATGATTGTGAAGCCGCATTTGAAGACTATAGCTGACATTGCAGTTGATATTTCTTTTACATTCCAGCTTCATCGCAGTTGCCCCCATGGCGTTTTGTTATCGATGGAGGGATTCA
CGTTGCCATCCTCTCAACCTACATGTATTTTGAAGGACAAAGATATTGTTAGTGTGAATAAGAACAGGGATTCATCTGAGAAATATATCTTAACTAATGAGGGGCTTGCCAGTATTAGAGTCTCTGAAACAGTTGGAGAGAAACTGCCTGGATTTGGTGGTGTGAAGCTTCTTGCAATAGATGAGTTTGAGAAAGAAACT
GGAGGCTATCAAAGTGAGCGTGAAGACTATGGAACCAACTCTGGAGATGGAGGTGGAAGTCAGATGGAAAAAATTTCAATTTCAAAAGACTCTTCAAGGAAGAAAAGGAAACGATCAGAACGAGTTCAGTGCTCAAAGTATGTCTTATTGTTTCTGTGTAACTTCATCCCCATTTGCAAAGCCAAGATTGTTGTAATTTT
TCGAGGGCAATTTCTTTCTTTGTTCTATCACTCAATTTTTCCATGGAAGTCTTTGGCCATTTGTTTTAAATGTGGTTCCTACTAGGATTTTGACCTAATTTTTTTGATTTTGATTTTGGTCCATTGTTTTTCTTCAATTATACATCTAGTTTACTTGCAGGATCCTGTTTTTTGCGTTTGTATCTATGATGGGCTAGCTA
TATTATAGGGGGCATGAAATGTGAAAGCACAAAATCCAGATTCCATGTTATATGATAGGCAATCTGGGATATAAATGTGCTTTACTGCAAAACTATTTCTTATATTAGCTTTTTTTTCATATTTATAATCAGAAAAACTTTTGTATGCAGTCATGGCATCGACAGTGTGCTTTTTAAGTTTTATGGTTAACAACCTTAAA
ATGTCTAAATGCAGCCTTCCCCTTATATAGAATTATTTGCATTTGAACATGAAAGCGACGGAGATAGTATATAACGCATTTCTCACTAGACGTAGATATATTATAGAATAGTACAACTGCAACAGTTTTAGTTGGATCTTATGTTAATTAAAGTGTCACACCAAAGGGACTAGGGATAGTCGGTGGAATGCATAAACCAT
GGCATACAACGCAGATCTGTCAATGGTTAAGGGAAGCAAAGTCTTCACATTCAACTATTTAATCTTAAACCGTCAAATTACATATATGTTTTGATCTGCATTTCATTGCATTTGTGCTCACTTGTTTGGTATATTTTATCTTGTCATTGATAGCTAATATTTCTGCCTTAAATCTAGATAATTATAAGTAAGTCCTGAGA
TGCTTAAGATTTCATCACTTTGTTTGACATGACATTTCAAAATACTGAAGTTTTGGGAAGTGCAGGGTTATCTGTGTTCTTGAGGAATATTCTTATCTCGTGCCACTTCATAGTAGATTTTTAATGCTTTAATCCCTAAGTACGAAATATGTCCTTTTGTTGGAACAAGATTGAATACTATTTCACACCTTTTTTAACTT
GGTTATACAGAGTTTGGTATGCCTGATTTTATGTATTTTGGTCATTGCTGGTTGATGGCATAAATGATCATTGATAACCCATAAACACCTATTTCTTTTGAAAAAAACAGTTCCTATAAAGATAGACAGAAGTTTACTGTATTGAACCAAAATGGTTCAAGCTCTAATACCAATGTAATGAACAATATAGTTCATATACA
CAAAAATATCCAACATAGGAGGGAATGATAGTTGAAATCCATAAAGGACA
>TRINITY_DN117193_c0_g2_i9 from sample A3 / Example unspliced isoform:GCCCCCATGGCGTTTTGTTATCGgtaagggtttccttcataaataaacttttgttgttaatattttctatgtcatgaatatgcggattacaagttaatttacacatgagttaactgcaaaatgcttcgtcataggtctaaagaaatgcatttcttgaaaattatcgtctatggctgaagctttacaatgtattgttcaag
taaattggatttcaatttttctttattagaatacagaatcaggtggacaacttaatgttagtcaatttttcattcactggttagcgcctttgaaccgtagtctattgaaatttgaaggattctgtttaagATGGAGGGATTCACGTTGCCATCCTCTCAACCTACATGTATTTTGAAGGACAAAGATATTGTTAGTGTGA
ATAAGAACAGGGATTCATCTGAGAAATATATCTTAACTAATGAGGGGCTTGCCAGTATTAGAGTCTCTGAAACAGTTGGAGAGAAACTGCCTGGATTTGGTGGTGTGAAGCTTCTTGCAATAGATGAGTTTGAGAAAGAAACTGGAGGCTATCAAAGTGAGCGTGAAGACTATGGAACCAACTCTGGAGATGGAGGTGGA
AGTCAGATGGAAAAAATTTCAATTTCAAAAGACTCTTCAAGGAAGAAAAGGAAACGATCAGAACGAGTTCAGTGCTCAAAGGGGATAAATTCTATGGATGAGAACCGTAGTAATTTTCTGCAGGTTGCTGCAGAAGTCGGGGATGATAAACACATGCGTAAGAAGCATAAGAAAGAAAGGTCATATAAAGAGATGCGGTG
TGACATTATAGAGGACCAGAATAATACTAAAACCATTGAAATTGGAAATATACATGCAGAAGATAATGGTACTTTGCAATCAAAAGAACATAAATCAAAAAAGAAAATAAAAGATAAAAAGGCAAAAAGTTGGAAGGTACACAAAGAATCAGAGGAGTTCCTGGAAAGTGATCATATGACAGAGAGATGTCCTGCAAGGG
GGATAAATTCTATGGATGAGAACCGTAGTAATTTTCTGCAGGTTGCTGCAGAAGTCGGGGATGATAAACACATGCGTAAGAAGCATAAGAAAGAAAGGTCATATAAAGAGATGCGGTGTGACATTATAGAGGACCAGAATAATACTAAAACCATTGAAATTGGAAATATACATGCAGAAGATAATGGTACTTTGCAATCA
AAAGAACATAAATCAAAAAAGAAAATAAAAGATAAAAAGGCAAAAAGTTGGAAGGTACACAAAGAATCAGAGGAGTTCCTGGAAAGTGATCATATGACAGAGAGATGTCCTGCAAGAGAACATGATCAAGTTCAAGCACTGATCCCTGAGTTGGAGAATGCTTCTGCAGCATCTCAAGTAGAAAAAAAGTCTCCAAGCAG
AAGTGCAAGGAGGAAAAAAGCAAAGAGACGTTGGCTACGAGAACAGAAAGATAAAAATCAAGAGAAAAACAGCACCCTTGACAACCAAATTTTCTCAAAATGCAAGAAACTTCAAAAATCAAATCAATCTGATGATGCTGAAGCTGAAGAAGAAAGCCTTCCTGTAATAGTGAGACCTGGACATATACGCTTTGAGCCCA
TTAACAACGAGCAGGAGAGCCGGGGCATTCAAGATTCCACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCTTCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCG
CTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTC
TCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAAC
CTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGCCATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAAT
CAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGC
ATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGTTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTG
AAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTT
CAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTACAG
Intron 4 GTAAGAAGTC ... ATCATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.34 | 166.8 | 25.1 | 40 |
| A2 | 21.02 | 127.8 | 35.7 | 34 |
| A3 | 19.05 | 148.7 | 30.6 | 35 |
| A4 | 20.03 | 115.8 | 19.6 | 29 |
| A5 | 21.17 | 41 | 8.5 | 11 |
| A6 | 17.29 | 229.7 | 45.2 | 48 |
| A7 | 19.06 | 382.2 | 84.2 | 90 |
| A8 | 18.59 | 420.4 | 84.2 | 96 |
| A9 | 17.77 | 421.3 | 56.1 | 91 |
| A10 | 22.97 | 275.1 | 38.3 | 82 |
>TRINITY_DN129295_c7_g1_i5 from sample A1 / Example spliced isoformAGTTGGTGTTTAAAAGTTTGTTGTTACATTGATGTTCATGGATATAGAAACCTTTTTAGTTAAAATTTGAATATTTTATGTATATTTTATTTTTGTGGAGTAAACTCCGAGTTGAAGGGCTCATTTAGTCAGTCAATTGAGTTGAAAGGCTCACCGAGTCCGAGCTGAGTACAAGTCTAATAACTTTAGGCTGAGGTGGA
GGGTTCTAGTGATTTTTGGTCTCTTCCTTAAGTGCTTGGGGTTTCCTTGTTATTGACAAATTTATTCTAGTTTTTCTGTTATTGGAGTGTCCATAAAGTTTTAAGGATGATGATTGCGATTTCTTATCTGATATAGGTGTGTTGTTTAGTATCCATAATCTAGCTAGAGTTTTCTTAAAGCCTGCTTACTTGTAGTATGC
ATTCCATTCCAGTGGCAGTTTCTCCTTTGACAGTGTTCAGAACTAATACTTGTCACGATTATTAGTAGTGTGACTAGAGTGGTGGTAGTATGAGAGTGAAAACTGCTGACATATTGTTTATAAAATTTGTAGTTTGCCGGTAACATTCCATTGTGTAGTTGCAAGTTTTAGATGAACAGGCTATTTAGTCAATGACTTTG
ATCTGTTGTCTGAATTCTTCTGATGACGATAGATGCATTCAAAATATTACTGTTTAAATGAAGACTTTGAGATATGTGATGAAGAATCAGGTATGGTAGGTTTTCATGCTTGACCAGTCCCATATTGATCGTTTCAAGCAAAAAATTGAGTTCCAGATGATGGTGGAAACTTATGTTATGTCTTTCATAAATATCACTCC
AATATCTTACCTTTCCTTTACAGCTTTGGTTTCTTTTTGTGGATGCAGAGCAGGAGAGCCGGGGCATTCAAGATTCCACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCT
TCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTT
GGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTA
GCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAA
GGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAA
ACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACA
GCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGT
AATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACAC
CCCATGAACTACCTAC
>TRINITY_DN129295_c7_g1_i12 from sample A1 / Example unspliced isoform:CCAGAACTTTCTAGTTTCAGAGTATGTTCTCTTTCATGTACCCTGGCTACTGGATATTAATCATGCAGTTATCACTTAGAAAACCAAGTTTTTCTTCTACAGTTGTTGCAACATAACTGTCGTTTTTCAGGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTT
TTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATgtaagaagtctgtgcctctgttcagttctataagtagaaattatttattaatatggatggtgatatctcctgtgatttttgttgtcatcattacagATAGATTTTGCATCACTTGTT
GATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACT
TGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCT
TGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATG
AAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTG
CTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAAT
GCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC
Intron 5 GTAGATATCT ... GTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.6 | 73 | 27 | 81 |
| A2 | 53.42 | 34 | 12 | 39 |
| A3 | 48.21 | 29 | 1 | 27 |
| A4 | 53.7 | 25 | 5 | 29 |
| A5 | 64.29 | 5 | 4 | 9 |
| A6 | 47.83 | 24 | 3 | 22 |
| A7 | 49.66 | 74 | 9 | 73 |
| A8 | 55.21 | 73 | 24 | 90 |
| A9 | 52.5 | 57 | 8 | 63 |
| A10 | 49.25 | 68 | 7 | 66 |
>TRINITY_DN46247_c0_g1_i3 from sample A10 / Example spliced isoformGGGGCATTCAAGATTCCACGATGAATTGCAAACGTTTGCCATTGTTTTCCATCAAGTCAGATTATTTAGTCATACCATTATAATTCAAACTGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAA
GAGATATTTCCTTCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCAC
TAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAA
ATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCA
GTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGG
TGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGTTTGGTGGCCTGGATCTATAAAG
CTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAA
TAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTAC
>TRINITY_DN46247_c0_g1_i4 from sample A10 / Example unspliced isoform:AGATTATTGTTATATTCATAATTTATTAAGGTCAAAATGCTATAAGCGTATCATGTAGACTATGCACTGTGTATATTATATTTTTGTACATGGATTTGTGGGAATTGCCATAAGATAGTACAATGTATGGAAAATTAAAACAAAACTAACAACAGAATAAGAGTTTGCATCTGTAGGTTTGGATCAGAGATTGACCTTGA
TGATTGAAAAATTACAAATTGATATCTAGAATCAAATTGGGATAGGTCTCGTGTTTGACTAGCACTTGAAGTTTTAATGGCAGCAAGAGGAATCGAGCACAGGATGATAATTCTATGTAAACTCGAGCTATGTATTTGTTACTTGTTATTCTTTGTCAAGATCCTTTTTTGTATAGTGCATTGGCTGTTTGAGAGCACAT
GAGGATTCTCCCATTTATGAGATTATGTTTGCGCAAACGTGTTTATGTTTCCCAATATTTCATTGTTAAAAAGTACAAAACCTTTTACCTCTAGCAAGTTTTTGATCAGTAAAATATCATTTTATTATTGTTGGTCAGGTCTACATCTTTACAAAAACTATACAACAAACTATTGCATCATTGAGCATAGTATGAAACAG
TAAAATTTGATTGTGTGCTTGTGTTGTAGATGAATTGCAAACGTTTGCCATTGTTTTCCATCAAGTCAGATTATTTAGTCATACCATTATAATTCAAACTGgtagatatctttttcttggattttgcttagttggcaaattctgtgaactaaagttctcttctatttgtgctgagatatacatatctacttgttttattg
ttcttgcagCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCTTCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGG
TGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAG
GCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAG
AGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGC
TCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCT
CCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGTTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGA
ACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGT
TAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTAC
Intron 6 GTGGTATTCT ... GCTAGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.89 | 210 | 85.3 | 39 |
| A2 | 30.44 | 179 | 78.3 | 37.2 |
| A3 | 29.29 | 156.2 | 64.7 | 35.9 |
| A4 | 26.06 | 140 | 49.3 | 32.6 |
| A5 | 21.05 | 45 | 12 | 9.9 |
| A6 | 19.46 | 200 | 48.3 | 41.3 |
| A7 | 26.98 | 459 | 169.7 | 64 |
| A8 | 21.89 | 442 | 123.9 | 70.2 |
| A9 | 25.21 | 431 | 145.3 | 69.1 |
| A10 | 27.26 | 313 | 117.3 | 45.7 |
>TRINITY_DN129295_c7_g1_i5 from sample A1 / Example spliced isoformAGTTGGTGTTTAAAAGTTTGTTGTTACATTGATGTTCATGGATATAGAAACCTTTTTAGTTAAAATTTGAATATTTTATGTATATTTTATTTTTGTGGAGTAAACTCCGAGTTGAAGGGCTCATTTAGTCAGTCAATTGAGTTGAAAGGCTCACCGAGTCCGAGCTGAGTACAAGTCTAATAACTTTAGGCTGAGGTGGA
GGGTTCTAGTGATTTTTGGTCTCTTCCTTAAGTGCTTGGGGTTTCCTTGTTATTGACAAATTTATTCTAGTTTTTCTGTTATTGGAGTGTCCATAAAGTTTTAAGGATGATGATTGCGATTTCTTATCTGATATAGGTGTGTTGTTTAGTATCCATAATCTAGCTAGAGTTTTCTTAAAGCCTGCTTACTTGTAGTATGC
ATTCCATTCCAGTGGCAGTTTCTCCTTTGACAGTGTTCAGAACTAATACTTGTCACGATTATTAGTAGTGTGACTAGAGTGGTGGTAGTATGAGAGTGAAAACTGCTGACATATTGTTTATAAAATTTGTAGTTTGCCGGTAACATTCCATTGTGTAGTTGCAAGTTTTAGATGAACAGGCTATTTAGTCAATGACTTTG
ATCTGTTGTCTGAATTCTTCTGATGACGATAGATGCATTCAAAATATTACTGTTTAAATGAAGACTTTGAGATATGTGATGAAGAATCAGGTATGGTAGGTTTTCATGCTTGACCAGTCCCATATTGATCGTTTCAAGCAAAAAATTGAGTTCCAGATGATGGTGGAAACTTATGTTATGTCTTTCATAAATATCACTCC
AATATCTTACCTTTCCTTTACAGCTTTGGTTTCTTTTTGTGGATGCAGAGCAGGAGAGCCGGGGCATTCAAGATTCCACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCT
TCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTT
GGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTA
GCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAA
GGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAA
ACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACA
GCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGT
AATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACAC
CCCATGAACTACCTAC
>TRINITY_DN129295_c7_g1_i2 from sample A1 / Example unspliced isoform:AGTTGGTGTTTAAAAGTTTGTTGTTACATTGATGTTCATGGATATAGAAACCTTTTTAGTTAAAATTTGAATATTTTATGTATATTTTATTTTTGTGGAGTAAACTCCGAGTTGAAGGGCTCATTTAGTCAGTCAATTGAGTTGAAAGGCTCACCGAGTCCGAGCTGAGTACAAGTCTAATAACTTTAGGCTGAGGTGGA
GGGTTCTAGTGATTTTTGGTCTCTTCCTTAAGTGCTTGGGGTTTCCTTGTTATTGACAAATTTATTCTAGTTTTTCTGTTATTGGAGTGTCCATAAAGTTTTAAGGATGATGATTGCGATTTCTTATCTGATATAGGTGTGTTGTTTAGTATCCATAATCTAGCTAGAGTTTTCTTAAAGCCTGCTTACTTGTAGTATGC
ATTCCATTCCAGTGGCAGTTTCTCCTTTGACAGTGTTCAGAACTAATACTTGTCACGATTATTAGTAGTGTGACTAGAGTGGTGGTAGTATGAGAGTGAAAACTGCTGACATATTGTTTATAAAATTTGTAGTTTGCCGGTAACATTCCATTGTGTAGTTGCAAGTTTTAGATGAACAGGCTATTTAGTCAATGACTTTG
ATCTGTTGTCTGAATTCTTCTGATGACGATAGATGCATTCAAAATATTACTGTTTAAATGAAGACTTTGAGATATGTGATGAAGAATCAGGTATGGTAGGTTTTCATGCTTGACCAGTCCCATATTGATCGTTTCAAGCAAAAAATTGAGTTCCAGATGATGGTGGAAACTTATGTTATGTCTTTCATAAATATCACTCC
AATATCTTACCTTTCCTTTACAGCTTTGGTTTCTTTTTGTGGATGCAGAGCAGGAGAGCCGGGGCATTCAAGATTCCACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCT
TCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGCCACAGgtggtattctttgatgtttaatttttaaatatgtaccaagtcctaatgagagtttttggtcccttggagaatagaccaattttctattgaaatatttgagatttctcctcgtttttctt
tttcgtcttttcaaatggtttacatacaagtataaaggaactagaaaactggtatatgtctacgtaatttatattggcaaaacagcaaattcaaattgaaaatttattaatgtccaatttccacgaatgaccaaaatatatcaatgggacttgattgtagaacatgccctaactgctataaaggtagtgcatatcgaatc
tcccagcaaagtgaacagagtgaagttaactccaaatctattttgtcagtttcatgtattaaggataatatttttaagactttcaagtttcgacctgttctttcataactgtagattttgatgtgagcattatgttattgctaggacagGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGT
CCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGT
CCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGGTACTAGAGTTCCAGTTGCTGAGGAACCTGGAAGAATAGAAACACATGCAAATGGTCAGAGAAATTTAAAGAGCAGTGCTGACAAAAATACTGACTTTCCAGATATTGAGAAACTTGCAA
CTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAA
AGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATA
TTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAA
TACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAAT
TTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC
Intron 7 GTACTAGAGT ... GACTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.41 | 99 | 224.8 | 184.7 |
| A2 | 63.91 | 90 | 170.8 | 148 |
| A3 | 73.39 | 65 | 178.5 | 180 |
| A4 | 67.88 | 64 | 152.5 | 118 |
| A5 | 68.96 | 24 | 54.7 | 52 |
| A6 | 63.02 | 215 | 307.2 | 425.7 |
| A7 | 67.52 | 285 | 543.8 | 641.3 |
| A8 | 67.41 | 329 | 627.3 | 734 |
| A9 | 66.01 | 310 | 578.2 | 626 |
| A10 | 67.62 | 207 | 426.7 | 438 |
>TRINITY_DN129295_c7_g1_i19 from sample A1 / Example spliced isoformACCAGTTTCTTGTTTTATGAATGCTAATAGTTTACTTATATGTTTTATATCTTTATACATCAGCTCTTCTTGATTGCTTTATGATTTAGTGTTTGCATTTGTTTGATGATTAAACTATTCTCTTCTTATGAATGAAGCCTTCAAACCAAAATCACACAAAAACCAATTCATTTTCCTTCAGTTTTTATTGAGATTGTCCT
AGCTTGTACCTTCGTAGTCTAGGTACAATTTCTAGCACAAACAATGCCCAAATGGTGTGGGGGAGAGGGAACTTCCTTGCTTCACTTTGATTTCAGTTCTGAACCTCTTTGACAAGCTATCTATGGTTCTGATTTTGGTGTCGACCCCACCAAGCCCTAAAACAACATTTCACGGAAATCTATTAAACAGAATGCAAAAC
AAACTTTCATGAGAACTAAAAGGCAAAGCCAGCAGCAAAAGGATGATAGATTTTACTTAGAATCATCTCCCCTTTCCTGATAACTTGGTATATCCTCCTGTTCCTGCAATTTCCTAAGAAGTCCACCCCAATGTTTTTTTACTAGACCCTAGCCGTTCTAACTTCCTGCTTCTGGATACTTGTTTGCTGATGTTTGTCTT
TCGTGTCCAGTATTTGGGGACACAGAGCCCTCAACAGATTACCAAAATAAAAACTGATCCCACATTGCTGTGCTGGGGTTGTAAACAATGACCACTGCATGATGGCATTGATAGATGTGAGTAATGTTTAGATTGAATGACAAGTTATCTGGATTTTCACATGATATACTGGGATCTCAATACAGTGGATACATATGTTT
GACAGAGTTGACATATCAGATTTGAAATGCATGATAACTTTTGCAGAATAGAGTTGCAATTCTTTGTTTCAAATATTTGGTGAGTTTATCAACTGTGCTTAAACTGGTTATTAACTTATTTACTAAAATAGTATTAATGATGAAGTTGTCTATTCCTGAAAATTGGGTCTTGGTTATCTTCTGTAAGCTGATGGGAGGTC
ATAACCAATAACTGTCTAGTTGCATAGAATAAAATAGAATTTAAATAATCTCTAGTCCAGTGGTGGGATATGCCATTTCAGTACTTGATTTTGTTAAAGGGCATATGTGTATCATCTTTTATTGTTTGTAAGATTTTTTTCTGTTAAGAGTCAATATAAATTTTAAACCATTAATTTTTATTTCAGGGAACCACAGAGGA
TGAGTGTATGCTTTAATTAAGATATTTGACAAGTTTTCCTGGTCAAAGGGTTGTATGGATGGGAATTTTTGTTCAGAAGGCAATACATTTTCCTAGGAATTAGCGTGTTACACCTAAATTATACATTCATATCATTTTTGTGAATTTCTTCACAGGCTTATACTTTAGTCCTAGGAACTTCTTTCATTTGTTTGATCTCT
GTCAGTCATGGAATTTACTTACATTATTCATGATCCATATCAGTCTCCAAGCAGAAGTGCAAGGAGGAAAAAAGCAAAGAGACGTTGGCTACGAGAACAGAAAGATAAAAATCAAGAGGTATATACTGCACTTCTGTTGAGAGATTAGGTACATACCTTTTAAGGTTAAAATTTCATTTGTGACTCATTTGTCACTACGC
ATCTAATCTGAATGATTGATTTTTACATGTTGCTGGCAAGTCATTATCAGTAATCTATATTACTTCATAATACCTATTCAGCTATCATCTACTTTCTCTTTAGTTGGCTTCTCACGGTTTTTAATGTTCTGGGCCATTGTAGATGTTGGGTTTGCCTTTTGGATTTCAGTTTATCATATATATGTTTACCATAGATCGTT
TTCTTTTGTTTTGTAATGTCGGTTCAGAAAAACAGCACCCTTGACAACCAAATTTTCTCAAAATGCAAGAAACTTCAAAAATCAAATCAATCTGATGATGCTGAAGCTGAAGAAGAAAGCCTTCCTGTAATAGTGAGACCTGGACATATACGCTTTGAGCCCATTAACAACGAGCAGGAGAGCCGGGGCATTCAAGATTC
CACGCCAGCACTTCATTGGAATGGGATAACTAATAAAAGGCAAGGTCAGAACTGGGGAAAAGAGAGAAATTATCTCCACAAAGTAGAAGGCTCTGCTTGTCCCCAAGAAAAAGAGATATTTCCTTCACACAGTGGGGAGGAAAGGTCTTTTATCCAGTGTCCGCTTGAGTTTGACAAGCTTCCTAGCATGTCTGGTGTGC
CACAGGAAGGTGACATAATTGCATACCGTTTAGTGGAACTATCTACTTCCTGGTGTCCAGAACTTTCTAGTTTCAGAGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTTTTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATC
TCACCTTACAATGATGATGGCTCATTAGATATAGATTTTGCATCACTTGTTGATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGATATTGAGAAACTTGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGC
AAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCTTGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAAC
AGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATGAAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGG
ATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTGCTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATT
TTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAATGCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGC
CTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC
>TRINITY_DN129295_c7_g1_i12 from sample A1 / Example unspliced isoform:CCAGAACTTTCTAGTTTCAGAGTATGTTCTCTTTCATGTACCCTGGCTACTGGATATTAATCATGCAGTTATCACTTAGAAAACCAAGTTTTTCTTCTACAGTTGTTGCAACATAACTGTCGTTTTTCAGGTTGGCACAGTTGCATGGTATGATTGTCAAACCACTAAGATCAGGTTGGCACCAGTTTCTGAGTATCCTT
TTGAATTCTTGAATTCTCTTGGTGAAGAAGAAGATGCTAACCAGACAGGCATCTCACCTTACAATGATGATGGCTCATTAGATGTAAGAAGTCTGTGCCTCTGTTCAGTTCTATAAGTAGAAATTATTTATTAATATGGATGGTGATATCTCCTGTGATTTTTGTTGTCATCATTACAGATAGATTTTGCATCACTTGTT
GATGTCCGTTGGGTACATCAGCACAAGCCAACTTCTGAACCAATTCATATCGAAGGAGAAAATAAAATCTCTAGCACTGATACAGgtactagagttccagttgctgaggaacctggaagaatagaaacacatgcaaatggtcagagaaatttaaagagcagtgctgacaaaaatactgactttccagATATTGAGAAACT
TGCAACTGGAACACATGCAAATGCAGAGATAAATTCGAAGAGTGACATTGCAAATTTTCCAGTGCATACTGAAGGGAATGGAGAAATTGTGAGTATCTGGCAGGAGATCAATCAGGTGTTTAGTGCTAAAAAAGCGGAGCTTGCTCTTAAGAATGATCAGTCCAAGGTAGAGGACTTCGAGGCTGAGATGACAAAAACCT
TGAAAAGGCCTAGATCAAAAGGCTTAAAGGATATTAATCAAATTTCTAAACAGGGGGCAGGTGAAATGCCTAAACACACGAGTGGGTCAACTTATCCAAGGTCTTTCAAGGCATTGAGGAACTGCGCACTTGGTCCGACGATCTCCCTGTTAAGAGCACAGAATACACTATAGTAACTATCTTAATTCACTTTCCCTATG
AAATATTTTCTGGAGCATGTAGAGAAAATGTATGAAAGCTTGGTGGCCTGGATCTATAAAGCTTTAGTGGACAGCGAGTTAGATTGTTCTAATCAACTTTGTATCAGTTTTGAAGAAATATCCCTTTTTCATTAATACTATGGAACAGTACACTTTATAGCTTGGAATTCCTCTTAAATGAAACTTTTGGGTCTGTTTTG
CTAAATACATGTAAACACTGATTTTCCAAGACAGCGACCACTTTGTCTATTTTAAAGAAAATAAATGTCCTGTAATCTAATCACAAAGTATAATCTGCAATTCAATTTTTTTCAAACTCAAAACTTGCTGCCTCTTGCACAGGTTAAGGATCCTTAGCCAAACAATGAAACCAAGGTCTTCTGAAAAAATGTGTTACAAT
GCAATTTCATGTTCCTTGAAATCGACTTTGGATCTTTTAAAGGGCATGAGCCTAGGTTCCGTACAGTGAACACCCCATGAACTACCTAC